Wall clock time and date at job start Tue Mar 31 2020 20:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00634 * 2 1 4 4 C 1.52993 * 109.47277 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47388 * 65.62419 * 4 3 2 6 6 C 1.46897 * 110.99926 * 287.00175 * 5 4 3 7 7 C 1.50699 * 109.47179 * 302.58297 * 6 5 4 8 8 H 1.08003 * 119.99843 * 4.51279 * 7 6 5 9 9 C 1.37879 * 119.99960 * 184.51325 * 7 6 5 10 10 N 1.31516 * 119.99559 * 179.97438 * 9 7 6 11 11 Si 1.86791 * 120.00096 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.47425 * 89.99952 * 11 9 7 13 13 H 1.48508 * 109.47105 * 210.00068 * 11 9 7 14 14 H 1.48499 * 109.47114 * 329.99863 * 11 9 7 15 15 C 1.38438 * 110.99959 * 163.04860 * 5 4 3 16 16 N 1.31338 * 126.37228 * 17.06555 * 15 5 4 17 17 N 1.28510 * 110.08805 * 179.97438 * 16 15 5 18 18 C 1.31263 * 109.93805 * 0.02562 * 17 16 15 19 19 C 1.47837 * 126.47524 * 180.02562 * 18 17 16 20 20 C 1.39553 * 120.15629 * 226.90075 * 19 18 17 21 21 C 1.37947 * 119.88211 * 179.71959 * 20 19 18 22 22 C 1.38395 * 120.18895 * 0.58336 * 21 20 19 23 23 C 1.38284 * 120.31962 * 359.69082 * 22 21 20 24 24 C 1.38232 * 120.11881 * 0.02562 * 23 22 21 25 25 F 1.35099 * 120.09912 * 179.97438 * 24 23 22 26 26 N 1.36510 * 126.36672 * 196.75445 * 15 5 4 27 27 C 1.46501 * 127.16962 * 0.03703 * 26 15 5 28 28 H 1.09000 * 109.47553 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46995 * 300.00964 * 1 2 3 30 30 H 1.09007 * 109.46462 * 60.00468 * 1 2 3 31 31 H 1.08994 * 109.47247 * 59.98836 * 3 2 1 32 32 H 1.09001 * 109.46723 * 299.99545 * 3 2 1 33 33 H 1.09009 * 109.47223 * 185.62194 * 4 3 2 34 34 H 1.08997 * 109.47190 * 305.62554 * 4 3 2 35 35 H 1.09005 * 109.47169 * 62.58141 * 6 5 4 36 36 H 1.08997 * 109.47448 * 182.57873 * 6 5 4 37 37 H 0.97005 * 120.00106 * 179.97438 * 10 9 7 38 38 H 1.08007 * 120.05901 * 0.02562 * 20 19 18 39 39 H 1.07995 * 119.90592 * 180.27081 * 21 20 19 40 40 H 1.07996 * 119.83575 * 179.71933 * 22 21 20 41 41 H 1.08000 * 119.94057 * 180.02562 * 23 22 21 42 42 H 1.09005 * 109.46702 * 95.40351 * 27 26 15 43 43 H 1.08996 * 109.46859 * 215.40109 * 27 26 15 44 44 H 1.08993 * 109.47201 * 335.40909 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 6 3.5355 1.1844 0.0006 5 7 3.9791 0.5756 -1.2606 6 6 3.6622 -0.8584 -1.2930 7 6 4.3060 -1.5419 -0.1144 8 1 4.8306 -0.9584 0.6279 9 6 4.2255 -2.9121 0.0165 10 7 4.7879 -3.5086 1.0449 11 14 3.3177 -3.9211 -1.2669 12 1 4.2637 -4.3279 -2.3367 13 1 2.7422 -5.1320 -0.6282 14 1 2.2253 -3.1056 -1.8558 15 6 5.3313 0.7897 -1.4662 16 7 6.2087 1.1550 -0.5598 17 7 7.3739 1.2618 -1.0912 18 6 7.3111 0.9715 -2.3698 19 6 8.4363 0.9771 -3.3286 20 6 8.2957 1.5971 -4.5709 21 6 9.3513 1.6040 -5.4590 22 6 10.5448 0.9874 -5.1262 23 6 10.6911 0.3657 -3.8997 24 6 9.6437 0.3561 -2.9976 25 9 9.7869 -0.2519 -1.7997 26 7 6.0017 0.6546 -2.6477 27 6 5.4424 0.2584 -3.9425 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.6887 1.8464 0.8898 32 1 1.6888 1.8462 -0.8901 33 1 3.9786 2.1753 0.1013 34 1 3.8501 0.5591 0.8362 35 1 2.5815 -0.9929 -1.2452 36 1 4.0419 -1.2936 -2.2174 37 1 4.7309 -4.4726 1.1372 38 1 7.3638 2.0751 -4.8347 39 1 9.2444 2.0875 -6.4187 40 1 11.3660 0.9923 -5.8276 41 1 11.6253 -0.1132 -3.6461 42 1 5.2033 1.1496 -4.5228 43 1 6.1719 -0.3432 -4.4845 44 1 4.5360 -0.3255 -3.7834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589222060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:49 Heat of formation + Delta-G solvation = 43.986808 kcal Electronic energy + Delta-G solvation = -29546.817506 eV Core-core repulsion = 25416.529540 eV Total energy + Delta-G solvation = -4130.287966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.69723 -42.28915 -38.95451 -38.03227 -36.25331 -34.51122 -32.48259 -32.02922 -30.73508 -29.63470 -28.69769 -27.39257 -26.60608 -25.63085 -23.66988 -22.91327 -22.47845 -21.76894 -20.48895 -19.65760 -17.69174 -17.22138 -16.89992 -16.41127 -16.20172 -15.93866 -15.73662 -15.41515 -15.37308 -14.84296 -14.65115 -14.38184 -14.14035 -13.94619 -13.78924 -13.17079 -13.02375 -12.80412 -12.45622 -12.34407 -12.11462 -12.06716 -11.91318 -11.52744 -11.31980 -11.17609 -11.06532 -10.94396 -10.75355 -10.39849 -10.12224 -9.92191 -9.68079 -9.64127 -9.32774 -9.13750 -8.94907 -8.52302 -8.44778 -7.45632 -6.03056 -4.02036 0.78448 1.04089 2.28736 2.73292 3.24705 3.32393 3.34891 3.35687 3.58100 4.16582 4.27601 4.31302 4.40975 4.52139 4.62013 4.70873 4.93367 5.03077 5.11072 5.25239 5.28266 5.47372 5.53538 5.57043 5.58559 5.67021 5.74173 5.74952 5.80400 5.86323 5.93176 5.97034 5.99008 6.07913 6.15221 6.26142 6.49118 6.65069 6.72971 6.76039 7.04483 7.19627 7.33862 7.66232 7.73654 7.99047 8.46584 9.03272 9.34151 9.56282 11.10084 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.003991 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.615358 B = 7013.600222 C = 7803.856316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.071 3.929 4 C 0.070 3.930 5 N -0.458 5.458 6 C 0.155 3.845 7 C -0.541 4.541 8 H 0.085 0.915 9 C 0.078 3.922 10 N -0.893 5.893 11 Si 0.870 3.130 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.262 1.262 15 C 0.413 3.587 16 N -0.319 5.319 17 N -0.253 5.253 18 C 0.176 3.824 19 C -0.031 4.031 20 C -0.075 4.075 21 C -0.133 4.133 22 C -0.085 4.085 23 C -0.156 4.156 24 C 0.139 3.861 25 F -0.119 7.119 26 N -0.473 5.473 27 C 0.080 3.920 28 H 0.080 0.920 29 H 0.034 0.966 30 H 0.033 0.967 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.014 0.986 37 H 0.262 0.738 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.150 10.654 -15.275 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.278 6.278 3 C -0.006 4.006 4 C -0.057 4.057 5 N -0.181 5.181 6 C 0.031 3.969 7 C -0.580 4.580 8 H 0.103 0.897 9 C -0.125 4.125 10 N -0.531 5.531 11 Si 0.697 3.303 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.058 3.942 16 N -0.164 5.164 17 N -0.094 5.094 18 C -0.089 4.089 19 C -0.035 4.035 20 C -0.095 4.095 21 C -0.151 4.151 22 C -0.103 4.103 23 C -0.175 4.175 24 C 0.118 3.882 25 F -0.097 7.097 26 N -0.168 5.168 27 C -0.064 4.064 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.158 0.842 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.513 10.884 -14.160 18.036 hybrid contribution -0.863 -1.488 -1.080 2.031 sum 1.649 9.396 -15.240 17.979 Atomic orbital electron populations 1.22684 0.83000 1.02234 0.98937 1.88270 1.17858 1.26789 1.94862 1.22502 0.93563 0.85255 0.99310 1.22063 0.92509 0.99739 0.91422 1.59353 1.05120 1.18368 1.35306 1.20670 0.99796 0.79708 0.96769 1.21534 1.34862 0.92953 1.08610 0.89671 1.24831 0.94774 0.97643 0.95218 1.69922 1.44139 1.09757 1.29265 0.86951 0.80765 0.80405 0.82191 1.20706 1.21102 1.18629 1.22613 0.91803 0.98033 0.81746 1.74697 0.94906 1.23963 1.22873 1.74290 1.15963 1.16392 1.02721 1.21967 0.83349 1.09358 0.94211 1.17494 0.90281 1.02154 0.93536 1.21112 0.99643 0.97139 0.91621 1.21058 0.93023 1.01015 0.99981 1.21091 0.97791 0.95936 0.95524 1.21122 0.98707 1.03316 0.94351 1.17732 0.93766 0.94442 0.82302 1.91609 1.95860 1.79921 1.42282 1.45906 1.07799 1.53109 1.09966 1.22045 1.00971 1.01362 0.81981 0.90166 0.94753 0.94870 0.93094 0.93514 0.90064 0.89392 0.90484 0.96860 0.92772 0.85071 0.84963 0.84832 0.84206 0.90608 0.90052 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.36 -6.75 7.68 -35.23 -0.27 -7.03 16 3 C 0.07 1.16 6.25 37.15 0.23 1.40 16 4 C 0.07 1.38 4.83 -3.83 -0.02 1.36 16 5 N -0.46 -9.58 4.65 -175.88 -0.82 -10.40 16 6 C 0.15 3.65 3.54 -4.98 -0.02 3.64 16 7 C -0.54 -15.38 8.27 -34.44 -0.28 -15.66 16 8 H 0.09 2.73 6.56 -52.48 -0.34 2.39 16 9 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 10 N -0.89 -28.08 13.96 55.43 0.77 -27.31 16 11 Si 0.87 21.49 27.38 -169.99 -4.65 16.84 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.26 -6.07 6.67 56.52 0.38 -5.69 16 15 C 0.41 9.06 6.09 -318.85 -1.94 7.11 16 16 N -0.32 -7.71 11.29 30.32 0.34 -7.37 16 17 N -0.25 -5.84 12.03 32.59 0.39 -5.45 16 18 C 0.18 3.43 7.15 -153.79 -1.10 2.33 16 19 C -0.03 -0.48 5.64 -104.91 -0.59 -1.07 16 20 C -0.08 -0.84 9.08 -39.20 -0.36 -1.19 16 21 C -0.13 -1.13 10.03 -39.63 -0.40 -1.52 16 22 C -0.08 -0.72 10.04 -39.51 -0.40 -1.11 16 23 C -0.16 -1.72 10.01 -39.57 -0.40 -2.11 16 24 C 0.14 2.12 7.28 -39.02 -0.28 1.84 16 25 F -0.12 -2.23 16.67 2.25 0.04 -2.19 16 26 N -0.47 -8.94 3.23 -122.06 -0.39 -9.34 16 27 C 0.08 1.10 9.99 59.85 0.60 1.69 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.49 7.75 -51.92 -0.40 1.08 16 34 H 0.09 2.07 5.88 -51.93 -0.31 1.76 16 35 H 0.08 1.83 4.85 -51.93 -0.25 1.58 16 36 H 0.01 0.32 5.44 -51.93 -0.28 0.03 16 37 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 38 H 0.13 1.24 7.62 -52.48 -0.40 0.84 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 42 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 43 H 0.08 0.98 8.01 -51.93 -0.42 0.56 16 44 H 0.10 1.42 6.19 -51.93 -0.32 1.10 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -36.69 366.02 -8.70 -45.39 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.68 Total: 0.95 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -3.94 Total: 0.39 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.29 Total: -59.86 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.27 Total: -7.03 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.65 Total: 16.84 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.69 -8.70 -45.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589222060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.378 kcal (2) G-P(sol) polarization free energy of solvation -36.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds