Wall clock time and date at job start Tue Mar 31 2020 20:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00634 * 2 1 4 4 C 1.52993 * 109.47277 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47388 * 65.62419 * 4 3 2 6 6 C 1.46897 * 110.99926 * 287.00175 * 5 4 3 7 7 C 1.50699 * 109.47179 * 302.58297 * 6 5 4 8 8 H 1.08003 * 119.99843 * 4.51279 * 7 6 5 9 9 C 1.37879 * 119.99960 * 184.51325 * 7 6 5 10 10 N 1.31516 * 119.99559 * 179.97438 * 9 7 6 11 11 Si 1.86791 * 120.00096 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.47425 * 89.99952 * 11 9 7 13 13 H 1.48508 * 109.47105 * 210.00068 * 11 9 7 14 14 H 1.48499 * 109.47114 * 329.99863 * 11 9 7 15 15 C 1.38438 * 110.99959 * 163.04860 * 5 4 3 16 16 N 1.31338 * 126.37228 * 17.06555 * 15 5 4 17 17 N 1.28510 * 110.08805 * 179.97438 * 16 15 5 18 18 C 1.31263 * 109.93805 * 0.02562 * 17 16 15 19 19 C 1.47837 * 126.47524 * 180.02562 * 18 17 16 20 20 C 1.39553 * 120.15629 * 226.90075 * 19 18 17 21 21 C 1.37947 * 119.88211 * 179.71959 * 20 19 18 22 22 C 1.38395 * 120.18895 * 0.58336 * 21 20 19 23 23 C 1.38284 * 120.31962 * 359.69082 * 22 21 20 24 24 C 1.38232 * 120.11881 * 0.02562 * 23 22 21 25 25 F 1.35099 * 120.09912 * 179.97438 * 24 23 22 26 26 N 1.36510 * 126.36672 * 196.75445 * 15 5 4 27 27 C 1.46501 * 127.16962 * 0.03703 * 26 15 5 28 28 H 1.09000 * 109.47553 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46995 * 300.00964 * 1 2 3 30 30 H 1.09007 * 109.46462 * 60.00468 * 1 2 3 31 31 H 1.08994 * 109.47247 * 59.98836 * 3 2 1 32 32 H 1.09001 * 109.46723 * 299.99545 * 3 2 1 33 33 H 1.09009 * 109.47223 * 185.62194 * 4 3 2 34 34 H 1.08997 * 109.47190 * 305.62554 * 4 3 2 35 35 H 1.09005 * 109.47169 * 62.58141 * 6 5 4 36 36 H 1.08997 * 109.47448 * 182.57873 * 6 5 4 37 37 H 0.97005 * 120.00106 * 179.97438 * 10 9 7 38 38 H 1.08007 * 120.05901 * 0.02562 * 20 19 18 39 39 H 1.07995 * 119.90592 * 180.27081 * 21 20 19 40 40 H 1.07996 * 119.83575 * 179.71933 * 22 21 20 41 41 H 1.08000 * 119.94057 * 180.02562 * 23 22 21 42 42 H 1.09005 * 109.46702 * 95.40351 * 27 26 15 43 43 H 1.08996 * 109.46859 * 215.40109 * 27 26 15 44 44 H 1.08993 * 109.47201 * 335.40909 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 6 3.5355 1.1844 0.0006 5 7 3.9791 0.5756 -1.2606 6 6 3.6622 -0.8584 -1.2930 7 6 4.3060 -1.5419 -0.1144 8 1 4.8306 -0.9584 0.6279 9 6 4.2255 -2.9121 0.0165 10 7 4.7879 -3.5086 1.0449 11 14 3.3177 -3.9211 -1.2669 12 1 4.2637 -4.3279 -2.3367 13 1 2.7422 -5.1320 -0.6282 14 1 2.2253 -3.1056 -1.8558 15 6 5.3313 0.7897 -1.4662 16 7 6.2087 1.1550 -0.5598 17 7 7.3739 1.2618 -1.0912 18 6 7.3111 0.9715 -2.3698 19 6 8.4363 0.9771 -3.3286 20 6 8.2957 1.5971 -4.5709 21 6 9.3513 1.6040 -5.4590 22 6 10.5448 0.9874 -5.1262 23 6 10.6911 0.3657 -3.8997 24 6 9.6437 0.3561 -2.9976 25 9 9.7869 -0.2519 -1.7997 26 7 6.0017 0.6546 -2.6477 27 6 5.4424 0.2584 -3.9425 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.6887 1.8464 0.8898 32 1 1.6888 1.8462 -0.8901 33 1 3.9786 2.1753 0.1013 34 1 3.8501 0.5591 0.8362 35 1 2.5815 -0.9929 -1.2452 36 1 4.0419 -1.2936 -2.2174 37 1 4.7309 -4.4726 1.1372 38 1 7.3638 2.0751 -4.8347 39 1 9.2444 2.0875 -6.4187 40 1 11.3660 0.9923 -5.8276 41 1 11.6253 -0.1132 -3.6461 42 1 5.2033 1.1496 -4.5228 43 1 6.1719 -0.3432 -4.4845 44 1 4.5360 -0.3255 -3.7834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589222060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:47 Heat of formation + Delta-G solvation = 18.867684 kcal Electronic energy + Delta-G solvation = -29547.906753 eV Core-core repulsion = 25416.529540 eV Total energy + Delta-G solvation = -4131.377213 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -49.94463 -43.85147 -39.90088 -39.47815 -37.75328 -35.93817 -34.63108 -33.18600 -31.61168 -31.14869 -30.34739 -28.74241 -28.11126 -26.96669 -24.96303 -24.07928 -23.93390 -23.26672 -21.79970 -21.26764 -19.26307 -18.80341 -18.21865 -17.68265 -17.53303 -17.29097 -17.05967 -16.71626 -16.68395 -16.43116 -16.09573 -15.60403 -15.45963 -15.41587 -14.84368 -14.52027 -14.23651 -14.20519 -14.08626 -13.60309 -13.52158 -13.34047 -13.13503 -12.88186 -12.74727 -12.64975 -12.48408 -12.46231 -12.17650 -12.12491 -11.75880 -11.74595 -11.43631 -11.06419 -10.81006 -10.80663 -10.36310 -9.98888 -9.73793 -9.14097 -8.28497 -6.32663 -0.19466 0.19043 0.80687 1.27907 1.31913 1.37870 1.44011 1.82550 2.32174 2.59786 2.90360 3.02333 3.08163 3.17530 3.23316 3.68042 3.80767 4.00306 4.03374 4.18719 4.23973 4.30385 4.32460 4.34743 4.48293 4.49178 4.53730 4.61396 4.64951 4.70997 4.75254 4.90544 4.93628 4.98713 5.04062 5.09763 5.14500 5.24753 5.29714 5.37786 5.42558 5.61346 5.80673 5.87255 6.20779 6.32838 6.48241 6.72885 7.29140 7.73564 8.89144 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.003991 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.615358 B = 7013.600222 C = 7803.856316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.079 3.921 4 C 0.072 3.928 5 N -0.437 5.437 6 C 0.169 3.831 7 C -0.535 4.535 8 H 0.029 0.971 9 C 0.008 3.992 10 N -0.952 5.952 11 Si 0.945 3.055 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.229 1.229 15 C 0.389 3.611 16 N -0.364 5.364 17 N -0.312 5.312 18 C 0.199 3.801 19 C -0.069 4.069 20 C -0.068 4.068 21 C -0.113 4.113 22 C -0.064 4.064 23 C -0.154 4.154 24 C 0.094 3.906 25 F -0.156 7.156 26 N -0.471 5.471 27 C 0.068 3.932 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.036 0.964 35 H 0.088 0.912 36 H 0.022 0.978 37 H 0.263 0.737 38 H 0.151 0.849 39 H 0.179 0.821 40 H 0.179 0.821 41 H 0.156 0.844 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 11.770 -21.042 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.002 3.998 4 C -0.055 4.055 5 N -0.161 5.161 6 C 0.044 3.956 7 C -0.574 4.574 8 H 0.047 0.953 9 C -0.189 4.189 10 N -0.593 5.593 11 Si 0.767 3.233 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.152 1.152 15 C 0.032 3.968 16 N -0.208 5.208 17 N -0.152 5.152 18 C -0.067 4.067 19 C -0.073 4.073 20 C -0.087 4.087 21 C -0.130 4.130 22 C -0.082 4.082 23 C -0.173 4.173 24 C 0.074 3.926 25 F -0.135 7.135 26 N -0.165 5.165 27 C -0.072 4.072 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.168 0.832 39 H 0.197 0.803 40 H 0.197 0.803 41 H 0.174 0.826 42 H 0.136 0.864 43 H 0.119 0.881 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.735 12.039 -19.953 23.368 hybrid contribution -0.420 -1.714 0.629 1.873 sum 1.315 10.325 -19.324 21.949 Atomic orbital electron populations 1.22875 0.80483 1.02964 1.00903 1.88160 1.20696 1.28093 1.95246 1.22488 0.90568 0.85038 1.01674 1.22046 0.95472 0.98756 0.89252 1.59466 1.04666 1.16543 1.35420 1.20440 0.99651 0.80987 0.94527 1.21721 1.33794 0.92949 1.08916 0.95267 1.25897 0.95996 0.99166 0.97843 1.70126 1.46803 1.10096 1.32274 0.85764 0.80113 0.78485 0.78923 1.19803 1.20988 1.15198 1.22769 0.92033 0.99215 0.82750 1.74537 0.95949 1.25345 1.24970 1.74176 1.15914 1.19842 1.05238 1.22789 0.84551 1.05610 0.93793 1.17733 0.89125 1.05582 0.94824 1.21391 1.01524 0.95970 0.89864 1.21612 0.91562 0.99113 1.00729 1.21682 0.99050 0.93000 0.94469 1.21433 0.97988 1.03288 0.94549 1.18337 0.95538 0.96527 0.82242 1.91510 1.96156 1.81039 1.44782 1.46216 1.07385 1.52160 1.10740 1.22482 1.01003 1.03650 0.80110 0.90146 0.93153 0.92457 0.90826 0.90761 0.89402 0.94531 0.89453 0.95990 0.92848 0.83179 0.80340 0.80319 0.82613 0.86423 0.88095 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 11.01 113.37 1.25 1.86 16 2 O -0.40 -14.81 7.68 -148.98 -1.14 -15.96 16 3 C 0.08 2.53 6.25 71.98 0.45 2.98 16 4 C 0.07 2.99 4.83 86.30 0.42 3.41 16 5 N -0.44 -18.72 4.65 -710.35 -3.31 -22.02 16 6 C 0.17 8.06 3.54 85.56 0.30 8.36 16 7 C -0.53 -32.12 8.27 25.60 0.21 -31.91 16 8 H 0.03 2.05 6.56 -2.91 -0.02 2.03 16 9 C 0.01 0.48 5.47 84.65 0.46 0.94 16 10 N -0.95 -63.45 13.96 21.45 0.30 -63.15 16 11 Si 0.94 44.77 27.38 68.60 1.88 46.65 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 14 H -0.23 -9.60 6.67 99.48 0.66 -8.93 16 15 C 0.39 17.81 6.09 260.10 1.58 19.40 16 16 N -0.36 -19.03 11.29 -58.00 -0.65 -19.69 16 17 N -0.31 -15.55 12.03 -50.82 -0.61 -16.16 16 18 C 0.20 8.04 7.15 136.22 0.97 9.02 16 19 C -0.07 -2.10 5.64 -20.05 -0.11 -2.21 16 20 C -0.07 -1.26 9.08 22.52 0.20 -1.06 16 21 C -0.11 -1.25 10.03 22.24 0.22 -1.02 16 22 C -0.06 -0.74 10.04 22.32 0.22 -0.51 16 23 C -0.15 -3.05 10.01 22.28 0.22 -2.83 16 24 C 0.09 2.93 7.28 22.63 0.16 3.10 16 25 F -0.16 -6.39 16.67 44.97 0.75 -5.64 16 26 N -0.47 -17.92 3.23 -540.08 -1.75 -19.67 16 27 C 0.07 1.71 9.99 127.77 1.28 2.99 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.09 3.43 7.75 -2.38 -0.02 3.41 16 34 H 0.04 1.89 5.88 -2.39 -0.01 1.87 16 35 H 0.09 4.05 4.85 -2.38 -0.01 4.04 16 36 H 0.02 1.02 5.44 -2.39 -0.01 1.00 16 37 H 0.26 16.36 8.31 -92.70 -0.77 15.59 16 38 H 0.15 2.17 7.62 -2.91 -0.02 2.14 16 39 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 40 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 41 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 42 H 0.12 1.95 8.05 -2.38 -0.02 1.93 16 43 H 0.10 2.13 8.01 -2.39 -0.02 2.11 16 44 H 0.09 2.43 6.19 -2.39 -0.01 2.42 16 Total: -1.00 -92.49 366.02 4.31 -88.19 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.99 Total: 14.93 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 7.85 Total: 12.53 kcal Atomic # 7 Polarization: -134.67 SS G_CDS: -6.02 Total: -140.69 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -1.14 Total: -15.96 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.75 Total: -5.64 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -92.49 4.31 -88.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589222060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.054 kcal (2) G-P(sol) polarization free energy of solvation -92.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds