Wall clock time and date at job start Tue Mar 31 2020 23:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86798 * 120.00163 * 2 1 4 4 H 1.48507 * 109.47023 * 269.99730 * 3 2 1 5 5 H 1.48496 * 109.47062 * 29.99546 * 3 2 1 6 6 H 1.48497 * 109.47170 * 149.99922 * 3 2 1 7 7 C 1.39896 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99979 * 197.08556 * 7 2 1 9 9 C 1.41152 * 120.00296 * 17.07792 * 7 2 1 10 10 C 1.40875 * 120.15835 * 25.48710 * 9 7 2 11 11 C 1.36374 * 119.82519 * 180.02562 * 10 9 7 12 12 C 1.39491 * 120.17183 * 359.97438 * 11 10 9 13 13 N 1.39238 * 119.83691 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99708 * 215.89515 * 13 12 11 15 15 O 1.21572 * 120.00208 * 355.50824 * 14 13 12 16 16 N 1.34779 * 119.99706 * 175.50482 * 14 13 12 17 17 C 1.46495 * 120.00258 * 180.02562 * 16 14 13 18 18 C 1.52991 * 109.47531 * 180.02562 * 17 16 14 19 19 O 1.42893 * 109.47814 * 64.99626 * 18 17 16 20 20 C 1.42896 * 114.00739 * 180.02562 * 19 18 17 21 21 H 1.09002 * 109.48251 * 310.00186 * 20 19 18 22 22 C 1.53092 * 109.48332 * 189.97620 * 20 19 18 23 23 C 1.53185 * 109.16403 * 182.41104 * 22 20 19 24 24 C 1.53175 * 109.03611 * 56.97975 * 23 22 20 25 25 C 1.53095 * 109.16325 * 303.02119 * 24 23 22 26 26 O 1.42901 * 109.42368 * 57.60545 * 25 24 23 27 27 C 1.39478 * 120.32834 * 0.02562 * 12 11 10 28 28 C 1.36381 * 120.17148 * 359.97438 * 27 12 11 29 29 H 0.97007 * 119.99694 * 0.02562 * 1 2 3 30 30 H 1.07992 * 120.08764 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.91569 * 180.27527 * 11 10 9 32 32 H 0.96997 * 119.99867 * 35.89003 * 13 12 11 33 33 H 0.97005 * 119.99858 * 0.02562 * 16 14 13 34 34 H 1.09003 * 109.46690 * 300.00181 * 17 16 14 35 35 H 1.09002 * 109.47416 * 59.99304 * 17 16 14 36 36 H 1.09004 * 109.47308 * 185.00020 * 18 17 16 37 37 H 1.09008 * 109.47042 * 304.99629 * 18 17 16 38 38 H 1.09003 * 109.52280 * 302.31445 * 22 20 19 39 39 H 1.08996 * 109.52343 * 62.50681 * 22 20 19 40 40 H 1.08999 * 109.54404 * 176.84869 * 23 22 20 41 41 H 1.08998 * 109.53736 * 297.11829 * 23 22 20 42 42 H 1.09006 * 109.52328 * 62.92466 * 24 23 22 43 43 H 1.09002 * 109.52124 * 183.05331 * 24 23 22 44 44 H 1.08998 * 109.47900 * 177.59131 * 25 24 23 45 45 H 1.09000 * 109.48389 * 297.61481 * 25 24 23 46 46 H 1.08001 * 119.91785 * 179.97438 * 27 12 11 47 47 H 1.08004 * 120.08457 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4403 2.6526 0.6999 6 1 3.5404 1.4401 0.7000 7 6 2.0082 -1.2116 0.0005 8 1 3.0525 -1.2321 0.2753 9 6 1.3491 -2.4072 -0.3579 10 6 0.2208 -2.3681 -1.2004 11 6 -0.4111 -3.5274 -1.5420 12 6 0.0574 -4.7496 -1.0598 13 7 -0.5934 -5.9289 -1.4126 14 6 -0.6948 -6.9350 -0.5216 15 8 -0.1483 -6.8459 0.5607 16 7 -1.4021 -8.0399 -0.8305 17 6 -1.5129 -9.1334 0.1381 18 6 -2.3620 -10.2581 -0.4573 19 8 -1.6869 -10.8190 -1.5849 20 6 -2.3992 -11.8835 -2.2185 21 1 -2.7120 -12.6091 -1.4677 22 6 -1.4897 -12.5680 -3.2423 23 6 -2.2785 -13.6680 -3.9595 24 6 -3.5214 -13.0501 -4.6073 25 6 -4.3523 -12.3470 -3.5308 26 8 -3.5505 -11.3579 -2.8821 27 6 1.1740 -4.7961 -0.2253 28 6 1.8164 -3.6452 0.1250 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1429 -1.4227 -1.5748 31 1 -1.2736 -3.4995 -2.1914 32 1 -0.9738 -6.0262 -2.2995 33 1 -1.8379 -8.1111 -1.6942 34 1 -0.5185 -9.5139 0.3716 35 1 -1.9841 -8.7652 1.0495 36 1 -2.5186 -11.0320 0.2943 37 1 -3.3256 -9.8578 -0.7728 38 1 -1.1438 -11.8342 -3.9703 39 1 -0.6330 -13.0079 -2.7318 40 1 -1.6539 -14.1222 -4.7287 41 1 -2.5823 -14.4275 -3.2391 42 1 -3.2164 -12.3260 -5.3629 43 1 -4.1170 -13.8347 -5.0740 44 1 -5.2160 -11.8689 -3.9929 45 1 -4.6910 -13.0786 -2.7973 46 1 1.5309 -5.7460 0.1446 47 1 2.6811 -3.6829 0.7710 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590607653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:01 Heat of formation + Delta-G solvation = -108.392698 kcal Electronic energy + Delta-G solvation = -27659.357767 eV Core-core repulsion = 23613.629684 eV Total energy + Delta-G solvation = -4045.728083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.13376 -39.71348 -37.75293 -37.14960 -34.67355 -34.17115 -34.10269 -32.84973 -31.04958 -29.59128 -29.29530 -28.29293 -25.26635 -24.77305 -23.70560 -22.77828 -21.46155 -20.78264 -20.74428 -19.98611 -17.95906 -17.82239 -17.22321 -17.10961 -16.65586 -16.22215 -15.39265 -15.16568 -15.13772 -14.96810 -14.70996 -14.18045 -14.05085 -13.79403 -13.55989 -13.34833 -13.21448 -12.93810 -12.62640 -12.50206 -12.13654 -11.99267 -11.74405 -11.68174 -11.57879 -11.32301 -11.21118 -11.07166 -11.04155 -10.91992 -10.67021 -10.23521 -9.99474 -9.94852 -9.49412 -9.36721 -9.08519 -8.82496 -8.74278 -7.43347 -6.87128 -6.65268 -4.21049 2.75353 2.85557 3.11112 3.13761 3.16017 3.18817 3.28150 3.54688 3.84009 3.99544 4.27075 4.30577 4.41176 4.46470 4.55145 4.71793 4.74797 4.81335 4.85945 5.03597 5.07014 5.11627 5.19755 5.26291 5.40606 5.46747 5.55658 5.65600 5.76870 5.78028 5.83400 6.29642 6.54639 6.59684 6.73163 6.86262 6.88874 6.97452 7.13718 7.22731 7.39287 7.48513 7.71775 7.99263 8.07825 8.15307 8.38755 8.62473 8.69552 8.97652 9.02249 9.24478 10.26586 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030983 B = 0.001745 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.515503 B =16042.613098 C =16311.435376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.103 3.897 10 C -0.153 4.153 11 C -0.116 4.116 12 C 0.013 3.987 13 N -0.667 5.667 14 C 0.695 3.305 15 O -0.582 6.582 16 N -0.748 5.748 17 C 0.145 3.855 18 C 0.049 3.951 19 O -0.360 6.360 20 C 0.256 3.744 21 H 0.053 0.947 22 C -0.142 4.142 23 C -0.120 4.120 24 C -0.161 4.161 25 C 0.072 3.928 26 O -0.405 6.405 27 C -0.077 4.077 28 C -0.215 4.215 29 H 0.279 0.721 30 H 0.120 0.880 31 H 0.089 0.911 32 H 0.391 0.609 33 H 0.396 0.604 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.050 0.950 46 H 0.107 0.893 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.833 -24.972 -8.296 28.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.101 3.899 10 C -0.173 4.173 11 C -0.136 4.136 12 C -0.080 4.080 13 N -0.312 5.312 14 C 0.396 3.604 15 O -0.459 6.459 16 N -0.406 5.406 17 C 0.020 3.980 18 C -0.027 4.027 19 O -0.279 6.279 20 C 0.160 3.840 21 H 0.070 0.930 22 C -0.180 4.180 23 C -0.158 4.158 24 C -0.199 4.199 25 C -0.004 4.004 26 O -0.326 6.326 27 C -0.098 4.098 28 C -0.235 4.235 29 H 0.090 0.910 30 H 0.138 0.862 31 H 0.107 0.893 32 H 0.224 0.776 33 H 0.230 0.770 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.115 0.885 45 H 0.069 0.931 46 H 0.125 0.875 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.401 -24.486 -7.300 27.226 hybrid contribution -0.399 0.300 -0.697 0.858 sum -9.800 -24.186 -7.997 27.294 Atomic orbital electron populations 1.69862 1.07514 1.29028 1.35743 1.25907 0.94732 1.01239 0.92416 0.86312 0.80487 0.80679 0.79206 1.19360 1.20422 1.18662 1.19539 0.97873 0.91182 1.40365 0.90445 1.17662 0.91409 0.92166 0.88704 1.20862 0.99347 0.96236 1.00840 1.20223 0.99224 0.91725 1.02445 1.16991 0.97645 0.83165 1.10183 1.42073 1.59736 1.14774 1.14665 1.16019 0.80032 0.80096 0.84301 1.90895 1.51288 1.80453 1.23280 1.45009 1.57513 1.17924 1.20139 1.21115 1.00663 0.84682 0.91504 1.22866 0.96344 0.95577 0.87933 1.88096 1.42883 1.52559 1.44370 1.22923 0.83783 0.86435 0.90882 0.93012 1.22026 0.98735 0.98398 0.98794 1.21593 0.96802 0.97350 1.00033 1.22256 0.97516 1.00893 0.99206 1.22504 0.93109 0.91009 0.93807 1.87823 1.38410 1.35563 1.70851 1.20407 0.93605 0.97959 0.97785 1.20670 1.03800 0.92676 1.06396 0.90998 0.86198 0.89286 0.77609 0.77028 0.90972 0.90072 0.91625 0.91546 0.89900 0.89980 0.90623 0.91628 0.90598 0.90495 0.88451 0.93138 0.87460 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.07 10.97 55.55 0.61 -20.46 16 2 C 0.07 1.91 5.14 -17.34 -0.09 1.82 16 3 Si 0.91 19.10 29.59 -169.99 -5.03 14.07 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.46 -12.57 9.04 -37.86 -0.34 -12.91 16 8 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 9 C 0.10 2.86 5.57 -106.80 -0.59 2.27 16 10 C -0.15 -4.06 8.63 -39.26 -0.34 -4.40 16 11 C -0.12 -2.76 9.90 -39.79 -0.39 -3.15 16 12 C 0.01 0.30 6.30 -83.57 -0.53 -0.22 16 13 N -0.67 -12.73 5.31 -14.10 -0.07 -12.81 16 14 C 0.69 13.36 8.39 -86.92 -0.73 12.63 16 15 O -0.58 -13.64 13.79 5.30 0.07 -13.56 16 16 N -0.75 -10.64 5.51 -65.23 -0.36 -11.00 16 17 C 0.15 1.76 6.06 -4.05 -0.02 1.73 16 18 C 0.05 0.46 5.94 37.15 0.22 0.68 16 19 O -0.36 -3.82 10.20 -59.04 -0.60 -4.42 16 20 C 0.26 2.17 3.16 37.20 0.12 2.29 16 21 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 22 C -0.14 -1.01 5.79 -26.59 -0.15 -1.17 16 23 C -0.12 -0.61 6.03 -26.55 -0.16 -0.77 16 24 C -0.16 -0.80 6.14 -26.59 -0.16 -0.96 16 25 C 0.07 0.43 6.84 37.21 0.25 0.68 16 26 O -0.41 -3.73 10.25 -59.04 -0.60 -4.33 16 27 C -0.08 -1.96 8.61 -39.79 -0.34 -2.31 16 28 C -0.22 -5.70 9.74 -39.26 -0.38 -6.08 16 29 H 0.28 6.71 8.30 -40.82 -0.34 6.38 16 30 H 0.12 3.24 6.20 -52.49 -0.33 2.91 16 31 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.39 5.99 8.83 -40.82 -0.36 5.63 16 33 H 0.40 4.78 8.49 -40.82 -0.35 4.43 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.61 7.89 -51.92 -0.41 0.20 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.11 2.72 6.26 -52.49 -0.33 2.39 16 47 H 0.09 2.37 8.06 -52.48 -0.42 1.94 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -33.16 385.83 -11.06 -44.21 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -7.24 Total: 12.35 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -3.65 Total: -9.86 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.18 Total: -44.27 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -1.13 Total: -22.31 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.16 -11.06 -44.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590607653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.179 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds