Wall clock time and date at job start Tue Mar 31 2020 23:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86798 * 120.00163 * 2 1 4 4 H 1.48507 * 109.47023 * 269.99730 * 3 2 1 5 5 H 1.48496 * 109.47062 * 29.99546 * 3 2 1 6 6 H 1.48497 * 109.47170 * 149.99922 * 3 2 1 7 7 C 1.39896 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99979 * 197.08556 * 7 2 1 9 9 C 1.41152 * 120.00296 * 17.07792 * 7 2 1 10 10 C 1.40875 * 120.15835 * 25.48710 * 9 7 2 11 11 C 1.36374 * 119.82519 * 180.02562 * 10 9 7 12 12 C 1.39491 * 120.17183 * 359.97438 * 11 10 9 13 13 N 1.39238 * 119.83691 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99708 * 215.89515 * 13 12 11 15 15 O 1.21572 * 120.00208 * 355.50824 * 14 13 12 16 16 N 1.34779 * 119.99706 * 175.50482 * 14 13 12 17 17 C 1.46495 * 120.00258 * 180.02562 * 16 14 13 18 18 C 1.52991 * 109.47531 * 180.02562 * 17 16 14 19 19 O 1.42893 * 109.47814 * 64.99626 * 18 17 16 20 20 C 1.42896 * 114.00739 * 180.02562 * 19 18 17 21 21 H 1.09002 * 109.48251 * 310.00186 * 20 19 18 22 22 C 1.53092 * 109.48332 * 189.97620 * 20 19 18 23 23 C 1.53185 * 109.16403 * 182.41104 * 22 20 19 24 24 C 1.53175 * 109.03611 * 56.97975 * 23 22 20 25 25 C 1.53095 * 109.16325 * 303.02119 * 24 23 22 26 26 O 1.42901 * 109.42368 * 57.60545 * 25 24 23 27 27 C 1.39478 * 120.32834 * 0.02562 * 12 11 10 28 28 C 1.36381 * 120.17148 * 359.97438 * 27 12 11 29 29 H 0.97007 * 119.99694 * 0.02562 * 1 2 3 30 30 H 1.07992 * 120.08764 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.91569 * 180.27527 * 11 10 9 32 32 H 0.96997 * 119.99867 * 35.89003 * 13 12 11 33 33 H 0.97005 * 119.99858 * 0.02562 * 16 14 13 34 34 H 1.09003 * 109.46690 * 300.00181 * 17 16 14 35 35 H 1.09002 * 109.47416 * 59.99304 * 17 16 14 36 36 H 1.09004 * 109.47308 * 185.00020 * 18 17 16 37 37 H 1.09008 * 109.47042 * 304.99629 * 18 17 16 38 38 H 1.09003 * 109.52280 * 302.31445 * 22 20 19 39 39 H 1.08996 * 109.52343 * 62.50681 * 22 20 19 40 40 H 1.08999 * 109.54404 * 176.84869 * 23 22 20 41 41 H 1.08998 * 109.53736 * 297.11829 * 23 22 20 42 42 H 1.09006 * 109.52328 * 62.92466 * 24 23 22 43 43 H 1.09002 * 109.52124 * 183.05331 * 24 23 22 44 44 H 1.08998 * 109.47900 * 177.59131 * 25 24 23 45 45 H 1.09000 * 109.48389 * 297.61481 * 25 24 23 46 46 H 1.08001 * 119.91785 * 179.97438 * 27 12 11 47 47 H 1.08004 * 120.08457 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4403 2.6526 0.6999 6 1 3.5404 1.4401 0.7000 7 6 2.0082 -1.2116 0.0005 8 1 3.0525 -1.2321 0.2753 9 6 1.3491 -2.4072 -0.3579 10 6 0.2208 -2.3681 -1.2004 11 6 -0.4111 -3.5274 -1.5420 12 6 0.0574 -4.7496 -1.0598 13 7 -0.5934 -5.9289 -1.4126 14 6 -0.6948 -6.9350 -0.5216 15 8 -0.1483 -6.8459 0.5607 16 7 -1.4021 -8.0399 -0.8305 17 6 -1.5129 -9.1334 0.1381 18 6 -2.3620 -10.2581 -0.4573 19 8 -1.6869 -10.8190 -1.5849 20 6 -2.3992 -11.8835 -2.2185 21 1 -2.7120 -12.6091 -1.4677 22 6 -1.4897 -12.5680 -3.2423 23 6 -2.2785 -13.6680 -3.9595 24 6 -3.5214 -13.0501 -4.6073 25 6 -4.3523 -12.3470 -3.5308 26 8 -3.5505 -11.3579 -2.8821 27 6 1.1740 -4.7961 -0.2253 28 6 1.8164 -3.6452 0.1250 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1429 -1.4227 -1.5748 31 1 -1.2736 -3.4995 -2.1914 32 1 -0.9738 -6.0262 -2.2995 33 1 -1.8379 -8.1111 -1.6942 34 1 -0.5185 -9.5139 0.3716 35 1 -1.9841 -8.7652 1.0495 36 1 -2.5186 -11.0320 0.2943 37 1 -3.3256 -9.8578 -0.7728 38 1 -1.1438 -11.8342 -3.9703 39 1 -0.6330 -13.0079 -2.7318 40 1 -1.6539 -14.1222 -4.7287 41 1 -2.5823 -14.4275 -3.2391 42 1 -3.2164 -12.3260 -5.3629 43 1 -4.1170 -13.8347 -5.0740 44 1 -5.2160 -11.8689 -3.9929 45 1 -4.6910 -13.0786 -2.7973 46 1 1.5309 -5.7460 0.1446 47 1 2.6811 -3.6829 0.7710 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590607653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:52 Heat of formation + Delta-G solvation = -129.869816 kcal Electronic energy + Delta-G solvation = -27660.289085 eV Core-core repulsion = 23613.629684 eV Total energy + Delta-G solvation = -4046.659401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 8.30 seconds Orbital eigenvalues (eV) -41.38328 -40.63828 -39.28607 -38.23471 -36.26641 -35.59803 -34.68843 -34.65512 -31.81037 -31.42658 -30.83105 -29.66976 -26.71755 -25.68792 -24.24004 -23.95612 -23.15794 -22.53079 -21.68559 -21.23664 -19.49730 -19.10136 -18.54917 -18.23810 -17.74719 -17.09618 -16.88076 -16.49763 -16.33938 -15.83421 -15.69067 -15.43437 -15.31556 -14.87196 -14.84521 -14.48007 -14.35128 -14.05771 -13.91763 -13.70393 -13.65167 -13.46662 -13.17033 -12.82656 -12.80776 -12.71883 -12.47147 -12.16980 -12.11776 -11.86052 -11.81438 -11.52952 -11.42550 -11.19338 -10.99856 -10.85486 -10.65616 -10.47288 -10.07670 -9.44281 -8.81011 -8.57353 -6.25057 0.87565 1.16938 1.40472 1.50524 1.54145 1.81179 2.19932 2.23915 2.26875 2.77777 2.97519 3.41810 3.75207 3.78667 3.80227 3.89954 4.00311 4.05733 4.11618 4.22631 4.40707 4.41322 4.45490 4.55489 4.60383 4.69898 4.77764 4.83164 4.86588 4.94717 5.02345 5.10265 5.12400 5.13974 5.18597 5.32790 5.34026 5.46610 5.49885 5.67817 5.82086 5.98986 6.06097 6.13620 6.25760 6.28951 6.40861 6.67934 6.95399 7.02658 7.16958 7.68332 8.36141 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030983 B = 0.001745 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.515503 B =16042.613098 C =16311.435376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.497 4.497 8 H 0.074 0.926 9 C 0.073 3.927 10 C -0.170 4.170 11 C -0.112 4.112 12 C 0.026 3.974 13 N -0.659 5.659 14 C 0.692 3.308 15 O -0.626 6.626 16 N -0.727 5.727 17 C 0.141 3.859 18 C 0.060 3.940 19 O -0.383 6.383 20 C 0.251 3.749 21 H 0.070 0.930 22 C -0.142 4.142 23 C -0.117 4.117 24 C -0.159 4.159 25 C 0.065 3.935 26 O -0.429 6.429 27 C -0.089 4.089 28 C -0.233 4.233 29 H 0.289 0.711 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.412 0.588 33 H 0.410 0.590 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.065 0.935 46 H 0.104 0.896 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 -26.208 -9.260 29.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.526 4.526 8 H 0.092 0.908 9 C 0.070 3.930 10 C -0.190 4.190 11 C -0.133 4.133 12 C -0.068 4.068 13 N -0.307 5.307 14 C 0.393 3.607 15 O -0.507 6.507 16 N -0.384 5.384 17 C 0.017 3.983 18 C -0.017 4.017 19 O -0.303 6.303 20 C 0.156 3.844 21 H 0.087 0.913 22 C -0.180 4.180 23 C -0.155 4.155 24 C -0.196 4.196 25 C -0.011 4.011 26 O -0.351 6.351 27 C -0.109 4.109 28 C -0.253 4.253 29 H 0.099 0.901 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.249 0.751 33 H 0.246 0.754 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.123 0.877 45 H 0.083 0.917 46 H 0.122 0.878 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.901 -25.791 -8.316 29.209 hybrid contribution -0.042 0.498 -0.421 0.654 sum -10.943 -25.293 -8.737 28.910 Atomic orbital electron populations 1.69898 1.08936 1.30583 1.35776 1.26772 0.95557 1.04485 0.91239 0.85152 0.78892 0.75707 0.79604 1.18381 1.19217 1.18497 1.19769 0.98061 0.92411 1.42395 0.90802 1.17995 0.92493 0.92784 0.89705 1.20882 0.99755 0.96896 1.01445 1.20471 0.99671 0.90858 1.02266 1.17019 0.96684 0.84700 1.08388 1.41865 1.59430 1.13550 1.15850 1.16198 0.80042 0.80879 0.83617 1.90871 1.53173 1.81445 1.25177 1.44884 1.55747 1.16706 1.21059 1.21289 1.00762 0.84785 0.91441 1.22789 0.95305 0.95189 0.88383 1.88057 1.43930 1.53445 1.44858 1.23128 0.83899 0.85987 0.91430 0.91296 1.22057 0.99065 0.98571 0.98319 1.21607 0.96667 0.96829 1.00357 1.22246 0.97632 1.01072 0.98695 1.22732 0.93060 0.91015 0.94316 1.87782 1.38807 1.37177 1.71309 1.20496 0.94487 0.97355 0.98583 1.20788 1.04351 0.93095 1.07068 0.90055 0.87106 0.85899 0.75130 0.75416 0.92142 0.89954 0.88945 0.91132 0.91738 0.89732 0.89869 0.90278 0.91859 0.88534 0.87743 0.91652 0.87802 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.17 10.97 21.82 0.24 -43.93 16 2 C 0.03 1.76 5.14 85.24 0.44 2.20 16 3 Si 0.99 39.19 29.59 68.60 2.03 41.22 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 7 C -0.50 -28.00 9.04 23.39 0.21 -27.79 16 8 H 0.07 4.04 7.90 -2.91 -0.02 4.02 16 9 C 0.07 4.17 5.57 -21.28 -0.12 4.05 16 10 C -0.17 -9.16 8.63 22.48 0.19 -8.96 16 11 C -0.11 -5.29 9.90 22.14 0.22 -5.07 16 12 C 0.03 1.22 6.30 38.57 0.24 1.47 16 13 N -0.66 -24.34 5.31 -316.79 -1.68 -26.02 16 14 C 0.69 26.09 8.39 179.05 1.50 27.59 16 15 O -0.63 -29.51 13.79 -3.94 -0.05 -29.56 16 16 N -0.73 -19.69 5.51 -478.57 -2.64 -22.32 16 17 C 0.14 3.26 6.06 86.38 0.52 3.78 16 18 C 0.06 0.99 5.94 71.98 0.43 1.41 16 19 O -0.38 -7.54 10.20 -126.21 -1.29 -8.82 16 20 C 0.25 3.82 3.16 72.01 0.23 4.05 16 21 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 22 C -0.14 -1.86 5.79 30.69 0.18 -1.68 16 23 C -0.12 -0.94 6.03 30.71 0.19 -0.75 16 24 C -0.16 -1.25 6.14 30.68 0.19 -1.06 16 25 C 0.06 0.62 6.84 72.01 0.49 1.12 16 26 O -0.43 -7.16 10.25 -126.21 -1.29 -8.45 16 27 C -0.09 -4.61 8.61 22.14 0.19 -4.42 16 28 C -0.23 -12.81 9.74 22.48 0.22 -12.59 16 29 H 0.29 13.87 8.30 -92.70 -0.77 13.10 16 30 H 0.11 6.11 6.20 -2.91 -0.02 6.09 16 31 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 32 H 0.41 11.70 8.83 -92.71 -0.82 10.88 16 33 H 0.41 9.07 8.49 -92.70 -0.79 8.28 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.13 7.89 -2.38 -0.02 1.11 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 0.43 8.14 -2.39 -0.02 0.42 16 46 H 0.10 5.41 6.26 -2.91 -0.02 5.39 16 47 H 0.09 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -73.47 385.83 0.03 -73.45 By element: Atomic # 1 Polarization: 41.70 SS G_CDS: -0.61 Total: 41.09 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 5.32 Total: -16.65 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -4.08 Total: -92.27 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -2.63 Total: -46.84 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -73.47 0.03 -73.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590607653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.423 kcal (2) G-P(sol) polarization free energy of solvation -73.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.30 seconds