Wall clock time and date at job start Tue Mar 31 2020 22:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47140 * 274.99124 * 3 2 1 5 5 H 1.48506 * 109.47182 * 34.98648 * 3 2 1 6 6 H 1.48500 * 109.47323 * 154.98882 * 3 2 1 7 7 C 1.37881 * 120.00570 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00331 * 173.96633 * 7 2 1 9 9 C 1.50705 * 119.99392 * 354.23595 * 7 2 1 10 10 O 1.42894 * 110.88944 * 299.79209 * 9 7 2 11 11 C 1.55156 * 111.00016 * 175.91314 * 9 7 2 12 12 C 1.54371 * 102.92059 * 206.45621 * 11 9 7 13 13 N 1.47021 * 107.28632 * 22.13773 * 12 11 9 14 14 C 1.34782 * 125.64903 * 181.12818 * 13 12 11 15 15 O 1.21584 * 120.00086 * 179.97438 * 14 13 12 16 16 N 1.34783 * 119.99610 * 359.95841 * 14 13 12 17 17 C 1.46495 * 119.99751 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47267 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47284 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.46898 * 180.02562 * 19 18 17 21 21 C 1.38266 * 119.94287 * 269.73085 * 20 19 18 22 22 C 1.38149 * 120.05373 * 179.73126 * 21 20 19 23 23 C 1.38732 * 119.94080 * 0.56304 * 22 21 20 24 24 O 1.35902 * 120.05149 * 179.68725 * 23 22 21 25 25 C 1.38730 * 119.89016 * 359.70758 * 23 22 21 26 26 C 1.38141 * 119.94436 * 0.02562 * 25 23 22 27 27 C 1.47424 * 108.70527 * 1.09378 * 13 12 11 28 28 H 0.96997 * 120.00732 * 359.97438 * 1 2 3 29 29 H 0.96708 * 113.99643 * 59.30012 * 10 9 7 30 30 H 1.09003 * 110.72309 * 324.78746 * 11 9 7 31 31 H 1.08998 * 110.71846 * 88.06318 * 11 9 7 32 32 H 1.08996 * 109.84786 * 262.73547 * 12 11 9 33 33 H 1.09004 * 109.90305 * 141.57781 * 12 11 9 34 34 H 0.96999 * 120.00285 * 0.02562 * 16 14 13 35 35 H 1.09004 * 109.47451 * 300.00363 * 17 16 14 36 36 H 1.09004 * 109.47402 * 60.00167 * 17 16 14 37 37 H 1.08995 * 109.47222 * 300.00290 * 18 17 16 38 38 H 1.09004 * 109.46728 * 60.00299 * 18 17 16 39 39 H 1.08995 * 109.47349 * 300.00361 * 19 18 17 40 40 H 1.09004 * 109.46872 * 60.00536 * 19 18 17 41 41 H 1.08001 * 119.97659 * 359.97438 * 21 20 19 42 42 H 1.07996 * 120.02850 * 180.24985 * 22 21 20 43 43 H 0.96699 * 113.99745 * 270.01761 * 24 23 22 44 44 H 1.08002 * 120.02656 * 179.97438 * 25 23 22 45 45 H 1.08001 * 119.96934 * 180.02562 * 26 25 23 46 46 H 1.08999 * 110.36723 * 217.02770 * 27 13 12 47 47 H 1.09001 * 110.45885 * 94.75631 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5954 1.4121 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0801 -1.1965 -0.0988 9 6 1.2568 -2.4959 0.1300 10 8 0.5317 -2.5459 1.3603 11 6 2.2200 -3.7056 0.0025 12 6 1.2979 -4.8274 -0.5212 13 7 0.1417 -4.1805 -1.1587 14 6 -0.9036 -4.8184 -1.7219 15 8 -1.8086 -4.1786 -2.2218 16 7 -0.9454 -6.1655 -1.7311 17 6 -2.0818 -6.8589 -2.3426 18 6 -1.8835 -8.3709 -2.2187 19 6 -3.0707 -9.0950 -2.8569 20 6 -2.8755 -10.5843 -2.7342 21 6 -2.2184 -11.2788 -3.7330 22 6 -2.0333 -12.6432 -3.6203 23 6 -2.5179 -13.3182 -2.5093 24 8 -2.3427 -14.6614 -2.3992 25 6 -3.1819 -12.6199 -1.5113 26 6 -3.3594 -11.2548 -1.6261 27 6 0.3146 -2.7186 -1.0793 28 1 -0.4851 0.8400 0.0004 29 1 -0.1179 -1.8369 1.4630 30 1 3.0135 -3.4930 -0.7140 31 1 2.6370 -3.9705 0.9741 32 1 0.9634 -5.4493 0.3090 33 1 1.8315 -5.4358 -1.2515 34 1 -0.2235 -6.6760 -1.3321 35 1 -3.0009 -6.5703 -1.8325 36 1 -2.1499 -6.5861 -3.3958 37 1 -0.9645 -8.6598 -2.7285 38 1 -1.8158 -8.6433 -1.1654 39 1 -3.9895 -8.8060 -2.3467 40 1 -3.1388 -8.8226 -3.9101 41 1 -1.8459 -10.7536 -4.6001 42 1 -1.5164 -13.1846 -4.3987 43 1 -3.0594 -15.1843 -2.7839 44 1 -3.5603 -13.1433 -0.6457 45 1 -3.8759 -10.7107 -0.8492 46 1 -0.6453 -2.2319 -0.9070 47 1 0.7731 -2.3390 -1.9924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591962061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:11 Heat of formation + Delta-G solvation = -105.992317 kcal Electronic energy + Delta-G solvation = -27727.813017 eV Core-core repulsion = 23682.189022 eV Total energy + Delta-G solvation = -4045.623995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.16687 -39.59469 -37.70695 -37.31051 -35.43193 -34.21182 -33.01458 -32.20881 -31.36519 -30.31451 -29.32369 -27.72776 -25.93291 -24.65613 -23.18686 -22.72324 -22.04337 -21.29739 -19.63864 -19.34084 -18.79923 -17.52725 -17.01276 -16.39320 -16.36818 -15.77546 -15.54759 -15.39071 -14.96210 -14.76112 -14.43995 -14.27138 -13.83256 -13.82204 -13.42907 -13.34366 -12.97791 -12.77727 -12.64686 -12.40358 -12.08981 -12.01600 -11.81522 -11.67534 -11.44497 -11.24215 -11.04245 -10.99643 -10.81056 -10.76614 -10.56919 -10.48189 -10.17929 -9.58837 -9.36423 -9.32411 -8.82463 -8.78774 -8.70140 -8.33523 -7.64313 -6.25771 -4.35740 0.83584 0.97869 3.12044 3.21454 3.28266 3.29981 3.33481 3.79705 3.83182 4.26990 4.38073 4.44752 4.52197 4.61360 4.78991 4.98556 5.00079 5.04268 5.07098 5.13041 5.39238 5.42802 5.43318 5.52475 5.64717 5.67066 5.70108 5.79538 5.93697 5.95390 6.00428 6.03367 6.04998 6.16573 6.27918 6.44504 6.53620 6.73265 6.81160 6.92649 7.01584 7.24657 7.28036 7.35427 7.69311 7.76548 8.04320 8.57871 8.68884 9.18077 9.32226 9.37549 10.80522 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031830 B = 0.001758 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.467316 B =15921.103431 C =16225.696376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.247 3.753 10 O -0.582 6.582 11 C -0.116 4.116 12 C 0.106 3.894 13 N -0.629 5.629 14 C 0.715 3.285 15 O -0.598 6.598 16 N -0.753 5.753 17 C 0.140 3.860 18 C -0.125 4.125 19 C -0.078 4.078 20 C -0.086 4.086 21 C -0.100 4.100 22 C -0.143 4.143 23 C 0.096 3.904 24 O -0.501 6.501 25 C -0.143 4.143 26 C -0.100 4.100 27 C 0.115 3.885 28 H 0.270 0.730 29 H 0.381 0.619 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.393 0.607 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.389 0.611 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.085 0.915 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.506 -24.470 -5.708 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.366 5.366 14 C 0.417 3.583 15 O -0.477 6.477 16 N -0.410 5.410 17 C 0.016 3.984 18 C -0.163 4.163 19 C -0.116 4.116 20 C -0.086 4.086 21 C -0.118 4.118 22 C -0.162 4.162 23 C 0.052 3.948 24 O -0.311 6.311 25 C -0.162 4.162 26 C -0.118 4.118 27 C -0.007 4.007 28 H 0.080 0.920 29 H 0.230 0.770 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.226 0.774 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.244 0.756 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.104 0.896 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.507 -24.258 -5.742 25.529 hybrid contribution 0.034 0.856 -0.181 0.875 sum -5.472 -23.402 -5.923 24.753 Atomic orbital electron populations 1.69764 1.05951 1.27858 1.49275 1.25086 0.95022 0.99763 0.93375 0.86408 0.79916 0.82575 0.78109 1.20540 1.20939 1.19660 1.21465 0.94097 0.90212 1.52000 0.91512 1.19633 0.87055 0.91691 0.80961 1.86099 1.57107 1.55623 1.40227 1.22595 0.97323 0.94738 1.00703 1.21923 0.87671 0.96468 0.95744 1.47957 1.19938 1.09509 1.59193 1.15528 0.82108 0.81193 0.79446 1.90881 1.38359 1.65764 1.52675 1.45117 1.25579 1.05150 1.65203 1.21089 0.89094 0.89928 0.98324 1.21776 0.98678 0.93921 1.01893 1.20518 0.98859 0.89881 1.02306 1.19944 0.98202 0.95917 0.94537 1.20990 0.98385 0.93502 0.98943 1.21428 1.01781 0.95163 0.97818 1.18501 0.98515 0.83617 0.94213 1.84838 1.49264 1.14456 1.82554 1.21433 1.00077 0.94998 0.99652 1.20996 0.99523 0.93641 0.97621 1.23133 1.02506 0.75094 0.99967 0.92019 0.76984 0.90438 0.90801 0.92720 0.93209 0.77402 0.91860 0.91901 0.91144 0.91089 0.90330 0.90362 0.85452 0.85488 0.75572 0.85465 0.85412 0.89646 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.88 10.70 55.43 0.59 -23.29 16 2 C 0.07 1.86 5.27 -17.82 -0.09 1.76 16 3 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.02 8.25 -34.44 -0.28 -14.31 16 8 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 9 C 0.25 5.99 0.88 -89.62 -0.08 5.91 16 10 O -0.58 -14.83 13.17 -35.23 -0.46 -15.29 16 11 C -0.12 -2.28 6.13 -24.87 -0.15 -2.44 16 12 C 0.11 1.85 6.15 -3.04 -0.02 1.83 16 13 N -0.63 -13.26 3.33 -176.21 -0.59 -13.85 16 14 C 0.72 14.82 8.49 -86.91 -0.74 14.09 16 15 O -0.60 -14.77 16.60 5.29 0.09 -14.68 16 16 N -0.75 -11.39 5.52 -65.22 -0.36 -11.75 16 17 C 0.14 1.72 5.67 -4.05 -0.02 1.70 16 18 C -0.12 -1.07 5.31 -26.73 -0.14 -1.21 16 19 C -0.08 -0.57 5.34 -27.88 -0.15 -0.72 16 20 C -0.09 -0.67 5.13 -104.60 -0.54 -1.21 16 21 C -0.10 -0.76 9.69 -39.60 -0.38 -1.15 16 22 C -0.14 -1.12 9.99 -39.43 -0.39 -1.51 16 23 C 0.10 0.79 6.70 -39.22 -0.26 0.52 16 24 O -0.50 -3.68 13.50 -19.43 -0.26 -3.94 16 25 C -0.14 -1.13 9.99 -39.44 -0.39 -1.52 16 26 C -0.10 -0.77 9.69 -39.61 -0.38 -1.15 16 27 C 0.11 2.82 5.39 -2.53 -0.01 2.80 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.38 9.97 7.54 45.56 0.34 10.31 16 30 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.39 4.98 7.46 -40.82 -0.30 4.68 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 40 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.39 0.94 9.06 45.56 0.41 1.35 16 44 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 45 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.09 2.37 7.31 -51.93 -0.38 1.99 16 47 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 LS Contribution 390.69 15.07 5.89 5.89 Total: -1.00 -32.83 390.69 -9.97 -42.80 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -5.80 Total: 15.40 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -4.05 Total: 3.40 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.35 Total: -48.89 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.64 Total: -33.91 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.83 -9.97 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591962061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.197 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds