Wall clock time and date at job start Tue Mar 31 2020 22:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47140 * 274.99124 * 3 2 1 5 5 H 1.48506 * 109.47182 * 34.98648 * 3 2 1 6 6 H 1.48500 * 109.47323 * 154.98882 * 3 2 1 7 7 C 1.37881 * 120.00570 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00331 * 173.96633 * 7 2 1 9 9 C 1.50705 * 119.99392 * 354.23595 * 7 2 1 10 10 O 1.42894 * 110.88944 * 299.79209 * 9 7 2 11 11 C 1.55156 * 111.00016 * 175.91314 * 9 7 2 12 12 C 1.54371 * 102.92059 * 206.45621 * 11 9 7 13 13 N 1.47021 * 107.28632 * 22.13773 * 12 11 9 14 14 C 1.34782 * 125.64903 * 181.12818 * 13 12 11 15 15 O 1.21584 * 120.00086 * 179.97438 * 14 13 12 16 16 N 1.34783 * 119.99610 * 359.95841 * 14 13 12 17 17 C 1.46495 * 119.99751 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47267 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47284 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.46898 * 180.02562 * 19 18 17 21 21 C 1.38266 * 119.94287 * 269.73085 * 20 19 18 22 22 C 1.38149 * 120.05373 * 179.73126 * 21 20 19 23 23 C 1.38732 * 119.94080 * 0.56304 * 22 21 20 24 24 O 1.35902 * 120.05149 * 179.68725 * 23 22 21 25 25 C 1.38730 * 119.89016 * 359.70758 * 23 22 21 26 26 C 1.38141 * 119.94436 * 0.02562 * 25 23 22 27 27 C 1.47424 * 108.70527 * 1.09378 * 13 12 11 28 28 H 0.96997 * 120.00732 * 359.97438 * 1 2 3 29 29 H 0.96708 * 113.99643 * 59.30012 * 10 9 7 30 30 H 1.09003 * 110.72309 * 324.78746 * 11 9 7 31 31 H 1.08998 * 110.71846 * 88.06318 * 11 9 7 32 32 H 1.08996 * 109.84786 * 262.73547 * 12 11 9 33 33 H 1.09004 * 109.90305 * 141.57781 * 12 11 9 34 34 H 0.96999 * 120.00285 * 0.02562 * 16 14 13 35 35 H 1.09004 * 109.47451 * 300.00363 * 17 16 14 36 36 H 1.09004 * 109.47402 * 60.00167 * 17 16 14 37 37 H 1.08995 * 109.47222 * 300.00290 * 18 17 16 38 38 H 1.09004 * 109.46728 * 60.00299 * 18 17 16 39 39 H 1.08995 * 109.47349 * 300.00361 * 19 18 17 40 40 H 1.09004 * 109.46872 * 60.00536 * 19 18 17 41 41 H 1.08001 * 119.97659 * 359.97438 * 21 20 19 42 42 H 1.07996 * 120.02850 * 180.24985 * 22 21 20 43 43 H 0.96699 * 113.99745 * 270.01761 * 24 23 22 44 44 H 1.08002 * 120.02656 * 179.97438 * 25 23 22 45 45 H 1.08001 * 119.96934 * 180.02562 * 26 25 23 46 46 H 1.08999 * 110.36723 * 217.02770 * 27 13 12 47 47 H 1.09001 * 110.45885 * 94.75631 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5954 1.4121 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0801 -1.1965 -0.0988 9 6 1.2568 -2.4959 0.1300 10 8 0.5317 -2.5459 1.3603 11 6 2.2200 -3.7056 0.0025 12 6 1.2979 -4.8274 -0.5212 13 7 0.1417 -4.1805 -1.1587 14 6 -0.9036 -4.8184 -1.7219 15 8 -1.8086 -4.1786 -2.2218 16 7 -0.9454 -6.1655 -1.7311 17 6 -2.0818 -6.8589 -2.3426 18 6 -1.8835 -8.3709 -2.2187 19 6 -3.0707 -9.0950 -2.8569 20 6 -2.8755 -10.5843 -2.7342 21 6 -2.2184 -11.2788 -3.7330 22 6 -2.0333 -12.6432 -3.6203 23 6 -2.5179 -13.3182 -2.5093 24 8 -2.3427 -14.6614 -2.3992 25 6 -3.1819 -12.6199 -1.5113 26 6 -3.3594 -11.2548 -1.6261 27 6 0.3146 -2.7186 -1.0793 28 1 -0.4851 0.8400 0.0004 29 1 -0.1179 -1.8369 1.4630 30 1 3.0135 -3.4930 -0.7140 31 1 2.6370 -3.9705 0.9741 32 1 0.9634 -5.4493 0.3090 33 1 1.8315 -5.4358 -1.2515 34 1 -0.2235 -6.6760 -1.3321 35 1 -3.0009 -6.5703 -1.8325 36 1 -2.1499 -6.5861 -3.3958 37 1 -0.9645 -8.6598 -2.7285 38 1 -1.8158 -8.6433 -1.1654 39 1 -3.9895 -8.8060 -2.3467 40 1 -3.1388 -8.8226 -3.9101 41 1 -1.8459 -10.7536 -4.6001 42 1 -1.5164 -13.1846 -4.3987 43 1 -3.0594 -15.1843 -2.7839 44 1 -3.5603 -13.1433 -0.6457 45 1 -3.8759 -10.7107 -0.8492 46 1 -0.6453 -2.2319 -0.9070 47 1 0.7731 -2.3390 -1.9924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591962061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:09 Heat of formation + Delta-G solvation = -130.467214 kcal Electronic energy + Delta-G solvation = -27728.874328 eV Core-core repulsion = 23682.189022 eV Total energy + Delta-G solvation = -4046.685306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.22756 -40.68168 -39.17473 -38.12859 -36.52212 -36.03998 -34.21870 -34.01419 -31.90151 -31.82493 -30.31806 -29.45268 -27.27531 -26.05599 -24.14464 -23.72708 -23.02060 -21.96855 -21.45122 -20.81440 -19.32159 -19.25058 -18.77478 -17.42174 -17.13857 -16.97029 -16.74536 -16.58075 -16.22086 -16.12775 -15.86114 -15.42684 -14.93205 -14.75145 -14.67492 -14.56220 -14.32594 -14.00514 -13.67845 -13.60579 -13.49197 -13.23257 -13.05105 -12.82217 -12.75071 -12.52319 -12.43635 -12.31333 -12.22999 -12.08490 -11.98194 -11.70570 -11.33519 -11.31110 -11.15645 -10.68348 -10.31907 -10.16187 -9.91433 -9.38864 -9.30050 -8.23319 -6.40869 0.28180 0.42841 1.42227 1.44988 1.55380 1.72908 2.17652 2.39257 2.69370 3.01869 3.13523 3.35386 3.73133 3.80668 3.90388 4.09095 4.10093 4.13146 4.19180 4.31186 4.34079 4.37764 4.49004 4.49922 4.63651 4.71945 4.76173 4.79166 4.87863 5.02832 5.08441 5.09240 5.12597 5.20741 5.27922 5.33400 5.38817 5.41645 5.47709 5.50255 5.56082 5.71697 5.77236 5.94905 6.05471 6.21695 6.66599 6.86988 7.09268 7.28394 7.34262 7.60006 8.81284 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031830 B = 0.001758 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.467316 B =15921.103431 C =16225.696376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.964 3.036 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.557 4.557 8 H 0.070 0.930 9 C 0.231 3.769 10 O -0.586 6.586 11 C -0.110 4.110 12 C 0.107 3.893 13 N -0.636 5.636 14 C 0.708 3.292 15 O -0.647 6.647 16 N -0.731 5.731 17 C 0.138 3.862 18 C -0.109 4.109 19 C -0.073 4.073 20 C -0.094 4.094 21 C -0.104 4.104 22 C -0.154 4.154 23 C 0.087 3.913 24 O -0.514 6.514 25 C -0.155 4.155 26 C -0.106 4.106 27 C 0.130 3.870 28 H 0.269 0.731 29 H 0.372 0.628 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.409 0.591 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.408 0.592 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.042 0.958 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 -26.374 -5.792 27.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.790 3.210 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.596 4.596 8 H 0.088 0.912 9 C 0.190 3.810 10 O -0.393 6.393 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.372 5.372 14 C 0.410 3.590 15 O -0.529 6.529 16 N -0.388 5.388 17 C 0.014 3.986 18 C -0.147 4.147 19 C -0.111 4.111 20 C -0.094 4.094 21 C -0.122 4.122 22 C -0.172 4.172 23 C 0.043 3.957 24 O -0.327 6.327 25 C -0.173 4.173 26 C -0.124 4.124 27 C 0.006 3.994 28 H 0.078 0.922 29 H 0.220 0.780 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.245 0.755 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.267 0.733 44 H 0.154 0.846 45 H 0.156 0.844 46 H 0.061 0.939 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.204 -26.251 -5.818 27.215 hybrid contribution -0.401 1.368 -0.173 1.436 sum -4.605 -24.883 -5.991 26.005 Atomic orbital electron populations 1.69894 1.07203 1.28364 1.49920 1.25844 0.95713 1.02902 0.93088 0.85448 0.78886 0.78743 0.77962 1.20390 1.20919 1.18873 1.21814 0.94441 0.91360 1.51945 0.91183 1.19875 0.87638 0.93338 0.80129 1.86090 1.57001 1.55209 1.41044 1.22605 0.97021 0.93249 1.01945 1.22120 0.86237 0.95912 0.97220 1.47908 1.21296 1.08331 1.59688 1.15794 0.81384 0.82739 0.79132 1.90841 1.40114 1.67292 1.54698 1.44981 1.26617 1.03063 1.64159 1.21280 0.87686 0.92082 0.97540 1.21659 0.99688 0.90815 1.02549 1.20471 0.98398 0.89553 1.02679 1.19995 0.98624 0.95974 0.94781 1.21198 0.98120 0.93582 0.99332 1.21616 1.02021 0.95461 0.98137 1.18679 0.98514 0.84052 0.94454 1.84778 1.50620 1.14385 1.82956 1.21610 1.00373 0.95268 1.00057 1.21191 0.99477 0.93764 0.97944 1.22645 1.00094 0.77281 0.99343 0.92195 0.77964 0.89278 0.89570 0.90896 0.89173 0.75521 0.92934 0.92456 0.90206 0.90564 0.89961 0.89708 0.84143 0.84487 0.73303 0.84604 0.84368 0.93930 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.52 10.70 21.45 0.23 -50.29 16 2 C 0.03 1.34 5.27 84.66 0.45 1.79 16 3 Si 0.96 41.89 29.54 68.60 2.03 43.91 16 4 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.56 -29.03 8.25 25.60 0.21 -28.82 16 8 H 0.07 3.51 7.79 -2.91 -0.02 3.49 16 9 C 0.23 11.19 0.88 -10.15 -0.01 11.19 16 10 O -0.59 -30.16 13.17 -148.98 -1.96 -32.12 16 11 C -0.11 -4.13 6.13 31.80 0.19 -3.93 16 12 C 0.11 3.45 6.15 86.75 0.53 3.98 16 13 N -0.64 -26.44 3.33 -829.66 -2.76 -29.20 16 14 C 0.71 29.13 8.49 179.05 1.52 30.65 16 15 O -0.65 -32.79 16.60 -3.98 -0.07 -32.86 16 16 N -0.73 -20.81 5.52 -478.53 -2.64 -23.45 16 17 C 0.14 3.20 5.67 86.38 0.49 3.69 16 18 C -0.11 -1.61 5.31 30.59 0.16 -1.44 16 19 C -0.07 -0.92 5.34 29.85 0.16 -0.76 16 20 C -0.09 -1.28 5.13 -19.85 -0.10 -1.38 16 21 C -0.10 -1.39 9.69 22.26 0.22 -1.17 16 22 C -0.15 -2.15 9.99 22.37 0.22 -1.93 16 23 C 0.09 1.31 6.70 22.51 0.15 1.46 16 24 O -0.51 -6.85 13.50 -92.44 -1.25 -8.10 16 25 C -0.15 -2.22 9.99 22.36 0.22 -2.00 16 26 C -0.11 -1.46 9.69 22.25 0.22 -1.24 16 27 C 0.13 6.54 5.39 86.85 0.47 7.01 16 28 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.37 20.17 7.54 -74.05 -0.56 19.61 16 30 H 0.09 3.10 8.03 -2.39 -0.02 3.08 16 31 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.41 9.06 7.46 -92.71 -0.69 8.37 16 35 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 40 H 0.08 0.97 8.08 -2.38 -0.02 0.95 16 41 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 42 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.41 1.42 9.06 -74.06 -0.67 0.75 16 44 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 45 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 46 H 0.04 2.48 7.31 -2.39 -0.02 2.46 16 47 H 0.04 1.97 8.03 -2.39 -0.02 1.95 16 Total: -1.00 -72.72 390.69 -2.23 -74.95 By element: Atomic # 1 Polarization: 40.99 SS G_CDS: -0.92 Total: 40.07 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 5.10 Total: 17.08 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -5.17 Total: -102.94 kcal Atomic # 8 Polarization: -69.81 SS G_CDS: -3.28 Total: -73.09 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -72.72 -2.23 -74.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591962061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.514 kcal (2) G-P(sol) polarization free energy of solvation -72.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds