Wall clock time and date at job start Tue Mar 31 2020 22:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48499 * 109.47416 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47120 * 299.99741 * 3 2 1 6 6 H 1.48505 * 109.47054 * 59.99734 * 3 2 1 7 7 C 1.37879 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00292 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.88648 * 62.42292 * 9 7 2 11 11 C 1.55150 * 111.03730 * 186.32863 * 9 7 2 12 12 C 1.54333 * 103.02091 * 153.39670 * 11 9 7 13 13 N 1.47026 * 107.26450 * 338.14208 * 12 11 9 14 14 C 1.34775 * 125.64621 * 178.85228 * 13 12 11 15 15 O 1.21593 * 120.00002 * 179.69014 * 14 13 12 16 16 N 1.34780 * 120.00420 * 359.68875 * 14 13 12 17 17 C 1.46496 * 120.00222 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47133 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47141 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.46967 * 180.02562 * 19 18 17 21 21 C 1.38270 * 119.94421 * 270.25509 * 20 19 18 22 22 C 1.38138 * 120.05794 * 180.26220 * 21 20 19 23 23 C 1.38736 * 119.94337 * 359.46080 * 22 21 20 24 24 O 1.35893 * 120.05957 * 180.30421 * 23 22 21 25 25 C 1.38740 * 119.88595 * 0.28279 * 23 22 21 26 26 C 1.38146 * 119.94197 * 359.97438 * 25 23 22 27 27 C 1.47416 * 108.70303 * 358.58275 * 13 12 11 28 28 H 0.97005 * 120.00296 * 0.02562 * 1 2 3 29 29 H 0.96694 * 114.00228 * 297.57529 * 10 9 7 30 30 H 1.09000 * 110.72151 * 271.94932 * 11 9 7 31 31 H 1.08999 * 110.72127 * 35.22715 * 11 9 7 32 32 H 1.09003 * 109.99473 * 218.66828 * 12 11 9 33 33 H 1.08998 * 109.78464 * 97.49730 * 12 11 9 34 34 H 0.97000 * 119.99312 * 0.02562 * 16 14 13 35 35 H 1.09009 * 109.47124 * 60.00224 * 17 16 14 36 36 H 1.08993 * 109.47388 * 300.00261 * 17 16 14 37 37 H 1.08997 * 109.46483 * 60.00555 * 18 17 16 38 38 H 1.09003 * 109.46971 * 300.00106 * 18 17 16 39 39 H 1.08999 * 109.46732 * 60.00110 * 19 18 17 40 40 H 1.09002 * 109.47090 * 300.00428 * 19 18 17 41 41 H 1.08004 * 119.97397 * 0.02562 * 21 20 19 42 42 H 1.08002 * 120.03311 * 179.74549 * 22 21 20 43 43 H 0.96702 * 114.00269 * 89.99703 * 24 23 22 44 44 H 1.07993 * 120.02463 * 180.02562 * 25 23 22 45 45 H 1.08006 * 119.96944 * 179.97438 * 26 25 23 46 46 H 1.09008 * 110.36751 * 143.19478 * 27 13 12 47 47 H 1.09002 * 110.36931 * 265.40924 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.4615 -2.6316 -1.1832 11 6 2.2190 -3.7011 0.1608 12 6 1.3286 -4.7801 0.8125 13 7 0.2054 -4.0864 1.4597 14 6 -0.8079 -4.6797 2.1213 15 8 -1.6842 -4.0032 2.6243 16 7 -0.8500 -6.0228 2.2255 17 6 -1.9517 -6.6676 2.9442 18 6 -1.7612 -8.1855 2.9140 19 6 -2.9122 -8.8590 3.6640 20 6 -2.7241 -10.3539 3.6348 21 6 -3.2624 -11.0971 2.6005 22 6 -3.0961 -12.4682 2.5742 23 6 -2.3788 -13.0982 3.5808 24 8 -2.2085 -14.4461 3.5540 25 6 -1.8352 -12.3496 4.6147 26 6 -2.0089 -10.9793 4.6392 27 6 0.3745 -2.6343 1.2706 28 1 -0.4851 0.8401 -0.0004 29 1 -0.2244 -1.9564 -1.2761 30 1 2.5842 -4.0344 -0.8106 31 1 3.0492 -3.4427 0.8182 32 1 1.8998 -5.3351 1.5567 33 1 0.9532 -5.4600 0.0477 34 1 -0.1507 -6.5624 1.8245 35 1 -2.8971 -6.4109 2.4660 36 1 -1.9622 -6.3229 3.9781 37 1 -0.8159 -8.4425 3.3919 38 1 -1.7511 -8.5298 1.8798 39 1 -3.8572 -8.6018 3.1857 40 1 -2.9228 -8.5146 4.6981 41 1 -3.8166 -10.6057 1.8144 42 1 -3.5202 -13.0488 1.7683 43 1 -1.4155 -14.7331 3.0808 44 1 -1.2760 -12.8376 5.3992 45 1 -1.5862 -10.3961 5.4441 46 1 -0.5931 -2.1565 1.1163 47 1 0.8802 -2.1960 2.1310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591962066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:18 Heat of formation + Delta-G solvation = -106.224863 kcal Electronic energy + Delta-G solvation = -27739.563866 eV Core-core repulsion = 23693.929788 eV Total energy + Delta-G solvation = -4045.634079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.16806 -39.61537 -37.71348 -37.31803 -35.44249 -34.20587 -33.02377 -32.21683 -31.36617 -30.32331 -29.33406 -27.74187 -25.94081 -24.66104 -23.18750 -22.73857 -22.06042 -21.30046 -19.65291 -19.36427 -18.79635 -17.53985 -17.00116 -16.42144 -16.37321 -15.77260 -15.56266 -15.38547 -14.97019 -14.78149 -14.43815 -14.25306 -13.83550 -13.81164 -13.47677 -13.44789 -13.00846 -12.79570 -12.65875 -12.20714 -12.09829 -12.05787 -11.89093 -11.64965 -11.43351 -11.26862 -11.05671 -11.02307 -10.81522 -10.79382 -10.58841 -10.45444 -10.17741 -9.60922 -9.36524 -9.35369 -8.82237 -8.80647 -8.68777 -8.33799 -7.66747 -6.26258 -4.36089 0.83464 0.97821 3.10057 3.20776 3.28119 3.29958 3.32921 3.77680 3.83922 4.26562 4.37228 4.44580 4.50294 4.61097 4.78131 4.98205 5.00510 5.03510 5.06226 5.12462 5.38417 5.41844 5.42451 5.51539 5.64324 5.65597 5.69615 5.77657 5.93554 5.94143 5.98782 6.02791 6.04923 6.14813 6.27681 6.44354 6.51979 6.71438 6.79312 6.90067 6.98882 7.24799 7.25168 7.34485 7.66983 7.75879 8.05006 8.55884 8.68799 9.16044 9.31477 9.39620 10.80769 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.001766 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.052658 B =15852.440596 C =16155.897793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.106 3.894 13 N -0.629 5.629 14 C 0.715 3.285 15 O -0.598 6.598 16 N -0.753 5.753 17 C 0.140 3.860 18 C -0.124 4.124 19 C -0.078 4.078 20 C -0.086 4.086 21 C -0.100 4.100 22 C -0.143 4.143 23 C 0.096 3.904 24 O -0.502 6.502 25 C -0.143 4.143 26 C -0.100 4.100 27 C 0.114 3.886 28 H 0.269 0.731 29 H 0.381 0.619 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.392 0.608 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.390 0.610 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.085 0.915 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.423 -23.670 6.084 24.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.366 5.366 14 C 0.417 3.583 15 O -0.477 6.477 16 N -0.410 5.410 17 C 0.015 3.985 18 C -0.162 4.162 19 C -0.116 4.116 20 C -0.086 4.086 21 C -0.118 4.118 22 C -0.162 4.162 23 C 0.052 3.948 24 O -0.312 6.312 25 C -0.162 4.162 26 C -0.118 4.118 27 C -0.008 4.008 28 H 0.079 0.921 29 H 0.231 0.769 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.226 0.774 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.245 0.755 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.103 0.897 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.427 -23.581 6.733 24.761 hybrid contribution 0.844 0.970 -0.310 1.322 sum -2.584 -22.611 6.423 23.647 Atomic orbital electron populations 1.69731 1.05974 1.27784 1.49498 1.25086 0.95035 0.99761 0.93387 0.86358 0.80031 0.82803 0.77748 1.19605 1.20773 1.20792 1.21492 0.93654 0.90044 1.52399 0.91492 1.19645 0.86667 0.91555 0.81439 1.86098 1.51557 1.57154 1.44329 1.22588 0.97546 0.95209 1.00035 1.21922 0.88319 0.96067 0.95495 1.47942 1.23239 1.09779 1.55632 1.15528 0.81870 0.81387 0.79497 1.90886 1.39686 1.63291 1.53793 1.45112 1.29011 1.05445 1.61457 1.21095 0.89887 0.90577 0.96912 1.21774 0.98933 0.94111 1.01395 1.20524 0.99163 0.89998 1.01918 1.19940 0.97860 0.95929 0.94868 1.20996 0.99483 0.93149 0.98146 1.21432 1.00965 0.94962 0.98803 1.18499 0.98684 0.82774 0.94874 1.84822 1.49137 1.18358 1.78880 1.21428 1.01237 0.94165 0.99369 1.20985 0.98325 0.93883 0.98619 1.23119 1.02526 0.75683 0.99461 0.92054 0.76921 0.90796 0.90447 0.93192 0.92726 0.77417 0.91840 0.91889 0.91167 0.91105 0.90303 0.90348 0.85413 0.85467 0.75474 0.85490 0.85458 0.89679 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.87 10.69 55.43 0.59 -23.28 16 2 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 3 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -13.93 8.27 -34.44 -0.28 -14.22 16 8 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 9 C 0.25 5.96 0.87 -89.62 -0.08 5.89 16 10 O -0.58 -14.80 13.16 -35.23 -0.46 -15.27 16 11 C -0.12 -2.26 6.13 -24.90 -0.15 -2.42 16 12 C 0.11 1.82 6.15 -3.06 -0.02 1.80 16 13 N -0.63 -13.11 3.33 -176.23 -0.59 -13.69 16 14 C 0.72 14.66 8.49 -86.92 -0.74 13.92 16 15 O -0.60 -14.66 16.60 5.28 0.09 -14.57 16 16 N -0.75 -11.18 5.52 -65.22 -0.36 -11.54 16 17 C 0.14 1.69 5.67 -4.04 -0.02 1.67 16 18 C -0.12 -1.03 5.31 -26.73 -0.14 -1.17 16 19 C -0.08 -0.57 5.34 -27.88 -0.15 -0.72 16 20 C -0.09 -0.67 5.13 -104.60 -0.54 -1.21 16 21 C -0.10 -0.77 9.69 -39.61 -0.38 -1.15 16 22 C -0.14 -1.12 9.99 -39.43 -0.39 -1.52 16 23 C 0.10 0.79 6.71 -39.21 -0.26 0.52 16 24 O -0.50 -3.67 13.50 -19.40 -0.26 -3.93 16 25 C -0.14 -1.11 9.99 -39.43 -0.39 -1.51 16 26 C -0.10 -0.76 9.69 -39.61 -0.38 -1.14 16 27 C 0.11 2.77 5.38 -2.53 -0.01 2.76 16 28 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.38 9.97 7.56 45.56 0.34 10.32 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.39 4.84 7.46 -40.82 -0.30 4.54 16 35 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 40 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 41 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.39 1.00 9.06 45.56 0.41 1.42 16 44 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 46 H 0.08 2.34 7.33 -51.92 -0.38 1.96 16 47 H 0.06 1.42 8.03 -51.93 -0.42 1.01 16 LS Contribution 390.74 15.07 5.89 5.89 Total: -1.00 -32.73 390.74 -9.97 -42.70 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -5.80 Total: 15.14 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -4.05 Total: 3.25 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.35 Total: -48.51 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.64 Total: -33.77 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.73 -9.97 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591962066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.530 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds