Wall clock time and date at job start Tue Mar 31 2020 22:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48499 * 109.47416 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47120 * 299.99741 * 3 2 1 6 6 H 1.48505 * 109.47054 * 59.99734 * 3 2 1 7 7 C 1.37879 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00292 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.88648 * 62.42292 * 9 7 2 11 11 C 1.55150 * 111.03730 * 186.32863 * 9 7 2 12 12 C 1.54333 * 103.02091 * 153.39670 * 11 9 7 13 13 N 1.47026 * 107.26450 * 338.14208 * 12 11 9 14 14 C 1.34775 * 125.64621 * 178.85228 * 13 12 11 15 15 O 1.21593 * 120.00002 * 179.69014 * 14 13 12 16 16 N 1.34780 * 120.00420 * 359.68875 * 14 13 12 17 17 C 1.46496 * 120.00222 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47133 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47141 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.46967 * 180.02562 * 19 18 17 21 21 C 1.38270 * 119.94421 * 270.25509 * 20 19 18 22 22 C 1.38138 * 120.05794 * 180.26220 * 21 20 19 23 23 C 1.38736 * 119.94337 * 359.46080 * 22 21 20 24 24 O 1.35893 * 120.05957 * 180.30421 * 23 22 21 25 25 C 1.38740 * 119.88595 * 0.28279 * 23 22 21 26 26 C 1.38146 * 119.94197 * 359.97438 * 25 23 22 27 27 C 1.47416 * 108.70303 * 358.58275 * 13 12 11 28 28 H 0.97005 * 120.00296 * 0.02562 * 1 2 3 29 29 H 0.96694 * 114.00228 * 297.57529 * 10 9 7 30 30 H 1.09000 * 110.72151 * 271.94932 * 11 9 7 31 31 H 1.08999 * 110.72127 * 35.22715 * 11 9 7 32 32 H 1.09003 * 109.99473 * 218.66828 * 12 11 9 33 33 H 1.08998 * 109.78464 * 97.49730 * 12 11 9 34 34 H 0.97000 * 119.99312 * 0.02562 * 16 14 13 35 35 H 1.09009 * 109.47124 * 60.00224 * 17 16 14 36 36 H 1.08993 * 109.47388 * 300.00261 * 17 16 14 37 37 H 1.08997 * 109.46483 * 60.00555 * 18 17 16 38 38 H 1.09003 * 109.46971 * 300.00106 * 18 17 16 39 39 H 1.08999 * 109.46732 * 60.00110 * 19 18 17 40 40 H 1.09002 * 109.47090 * 300.00428 * 19 18 17 41 41 H 1.08004 * 119.97397 * 0.02562 * 21 20 19 42 42 H 1.08002 * 120.03311 * 179.74549 * 22 21 20 43 43 H 0.96702 * 114.00269 * 89.99703 * 24 23 22 44 44 H 1.07993 * 120.02463 * 180.02562 * 25 23 22 45 45 H 1.08006 * 119.96944 * 179.97438 * 26 25 23 46 46 H 1.09008 * 110.36751 * 143.19478 * 27 13 12 47 47 H 1.09002 * 110.36931 * 265.40924 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.4615 -2.6316 -1.1832 11 6 2.2190 -3.7011 0.1608 12 6 1.3286 -4.7801 0.8125 13 7 0.2054 -4.0864 1.4597 14 6 -0.8079 -4.6797 2.1213 15 8 -1.6842 -4.0032 2.6243 16 7 -0.8500 -6.0228 2.2255 17 6 -1.9517 -6.6676 2.9442 18 6 -1.7612 -8.1855 2.9140 19 6 -2.9122 -8.8590 3.6640 20 6 -2.7241 -10.3539 3.6348 21 6 -3.2624 -11.0971 2.6005 22 6 -3.0961 -12.4682 2.5742 23 6 -2.3788 -13.0982 3.5808 24 8 -2.2085 -14.4461 3.5540 25 6 -1.8352 -12.3496 4.6147 26 6 -2.0089 -10.9793 4.6392 27 6 0.3745 -2.6343 1.2706 28 1 -0.4851 0.8401 -0.0004 29 1 -0.2244 -1.9564 -1.2761 30 1 2.5842 -4.0344 -0.8106 31 1 3.0492 -3.4427 0.8182 32 1 1.8998 -5.3351 1.5567 33 1 0.9532 -5.4600 0.0477 34 1 -0.1507 -6.5624 1.8245 35 1 -2.8971 -6.4109 2.4660 36 1 -1.9622 -6.3229 3.9781 37 1 -0.8159 -8.4425 3.3919 38 1 -1.7511 -8.5298 1.8798 39 1 -3.8572 -8.6018 3.1857 40 1 -2.9228 -8.5146 4.6981 41 1 -3.8166 -10.6057 1.8144 42 1 -3.5202 -13.0488 1.7683 43 1 -1.4155 -14.7331 3.0808 44 1 -1.2760 -12.8376 5.3992 45 1 -1.5862 -10.3961 5.4441 46 1 -0.5931 -2.1565 1.1163 47 1 0.8802 -2.1960 2.1310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591962066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:15 Heat of formation + Delta-G solvation = -130.635422 kcal Electronic energy + Delta-G solvation = -27740.622388 eV Core-core repulsion = 23693.929788 eV Total energy + Delta-G solvation = -4046.692600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -41.23007 -40.68104 -39.17146 -38.12693 -36.51895 -36.02076 -34.22162 -34.01231 -31.90113 -31.82166 -30.31559 -29.45186 -27.27360 -26.05248 -24.14765 -23.72630 -23.02069 -21.96509 -21.45462 -20.81570 -19.31916 -19.23292 -18.76381 -17.42887 -17.14034 -16.97349 -16.74951 -16.61044 -16.22050 -16.09098 -15.86727 -15.41895 -14.93556 -14.75564 -14.64257 -14.48811 -14.32531 -14.17480 -13.70133 -13.57427 -13.47369 -13.22393 -12.86996 -12.84162 -12.75154 -12.58466 -12.49070 -12.32290 -12.19100 -12.07292 -11.97998 -11.70321 -11.33298 -11.31910 -11.17633 -10.66354 -10.31213 -10.16366 -9.91397 -9.38459 -9.30321 -8.23463 -6.40768 0.28215 0.42919 1.41401 1.44833 1.55665 1.72451 2.17583 2.39176 2.69244 3.02697 3.13853 3.35793 3.73115 3.81559 3.90489 4.08982 4.09905 4.13564 4.19557 4.31327 4.34920 4.37850 4.48977 4.49803 4.64020 4.72602 4.76206 4.78540 4.87526 5.03188 5.08612 5.08724 5.12072 5.21083 5.28028 5.33173 5.38769 5.40870 5.48339 5.50312 5.56131 5.71711 5.77388 5.94849 6.06979 6.21825 6.67205 6.86867 7.09414 7.28722 7.36107 7.60068 8.81866 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.001766 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.052658 B =15852.440596 C =16155.897793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.111 4.111 12 C 0.107 3.893 13 N -0.635 5.635 14 C 0.708 3.292 15 O -0.647 6.647 16 N -0.730 5.730 17 C 0.137 3.863 18 C -0.108 4.108 19 C -0.074 4.074 20 C -0.093 4.093 21 C -0.106 4.106 22 C -0.155 4.155 23 C 0.087 3.913 24 O -0.514 6.514 25 C -0.154 4.154 26 C -0.104 4.104 27 C 0.129 3.871 28 H 0.268 0.732 29 H 0.372 0.628 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.409 0.591 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.408 0.592 44 H 0.137 0.863 45 H 0.141 0.859 46 H 0.042 0.958 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 -25.602 6.194 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.593 4.593 8 H 0.088 0.912 9 C 0.190 3.810 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.372 5.372 14 C 0.409 3.591 15 O -0.530 6.530 16 N -0.387 5.387 17 C 0.014 3.986 18 C -0.146 4.146 19 C -0.112 4.112 20 C -0.094 4.094 21 C -0.124 4.124 22 C -0.173 4.173 23 C 0.043 3.957 24 O -0.328 6.328 25 C -0.172 4.172 26 C -0.122 4.122 27 C 0.005 3.995 28 H 0.078 0.922 29 H 0.221 0.779 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.245 0.755 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.267 0.733 44 H 0.155 0.845 45 H 0.159 0.841 46 H 0.060 0.940 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.898 -25.599 6.824 26.561 hybrid contribution 0.363 1.498 -0.336 1.578 sum -1.535 -24.101 6.489 25.006 Atomic orbital electron populations 1.69857 1.07215 1.28289 1.50148 1.25847 0.95737 1.02904 0.93140 0.85408 0.79220 0.78970 0.77423 1.18639 1.20643 1.20956 1.21837 0.93986 0.91213 1.52269 0.91207 1.19889 0.87230 0.93241 0.80612 1.86090 1.51447 1.56763 1.45146 1.22595 0.97193 0.93752 1.01304 1.22123 0.87122 0.95413 0.96816 1.47890 1.24544 1.08641 1.56122 1.15796 0.81174 0.82920 0.79170 1.90846 1.41482 1.64899 1.55765 1.44966 1.29857 1.03343 1.60574 1.21284 0.88498 0.92915 0.95949 1.21653 0.99892 0.90833 1.02196 1.20476 0.98822 0.89741 1.02133 1.19991 0.98259 0.95968 0.95135 1.21190 0.99467 0.93246 0.98469 1.21609 1.01194 0.95274 0.99223 1.18678 0.98780 0.83130 0.95111 1.84766 1.50561 1.18038 1.79403 1.21617 1.01537 0.94430 0.99648 1.21193 0.98121 0.94020 0.98900 1.22630 0.99974 0.77833 0.99026 0.92228 0.77938 0.89576 0.89289 0.89094 0.90827 0.75469 0.93007 0.92529 0.90046 0.90403 0.90075 0.89835 0.84370 0.84607 0.73272 0.84489 0.84149 0.93964 0.94388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.51 10.69 21.45 0.23 -50.28 16 2 C 0.02 1.29 5.29 84.66 0.45 1.74 16 3 Si 0.96 41.88 29.54 68.60 2.03 43.91 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.55 -28.81 8.27 25.60 0.21 -28.59 16 8 H 0.07 3.50 7.79 -2.91 -0.02 3.47 16 9 C 0.23 11.12 0.87 -10.15 -0.01 11.11 16 10 O -0.59 -30.12 13.16 -148.98 -1.96 -32.09 16 11 C -0.11 -4.08 6.13 31.78 0.19 -3.89 16 12 C 0.11 3.38 6.15 86.73 0.53 3.91 16 13 N -0.64 -26.07 3.33 -829.72 -2.76 -28.83 16 14 C 0.71 28.76 8.49 179.05 1.52 30.28 16 15 O -0.65 -32.58 16.60 -4.01 -0.07 -32.65 16 16 N -0.73 -20.32 5.52 -478.52 -2.64 -22.96 16 17 C 0.14 3.13 5.67 86.38 0.49 3.62 16 18 C -0.11 -1.51 5.31 30.60 0.16 -1.35 16 19 C -0.07 -0.93 5.34 29.85 0.16 -0.77 16 20 C -0.09 -1.27 5.13 -19.85 -0.10 -1.38 16 21 C -0.11 -1.45 9.69 22.25 0.22 -1.23 16 22 C -0.15 -2.21 9.99 22.37 0.22 -1.99 16 23 C 0.09 1.31 6.71 22.51 0.15 1.46 16 24 O -0.51 -6.84 13.50 -92.34 -1.25 -8.08 16 25 C -0.15 -2.14 9.99 22.37 0.22 -1.92 16 26 C -0.10 -1.38 9.69 22.25 0.22 -1.17 16 27 C 0.13 6.43 5.38 86.86 0.47 6.90 16 28 H 0.27 14.19 8.31 -92.70 -0.77 13.42 16 29 H 0.37 20.18 7.56 -74.06 -0.56 19.62 16 30 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.09 3.05 8.03 -2.39 -0.02 3.03 16 32 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.41 8.71 7.46 -92.71 -0.69 8.02 16 35 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 40 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 41 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 43 H 0.41 1.51 9.06 -74.06 -0.67 0.84 16 44 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 45 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 46 H 0.04 2.44 7.33 -2.38 -0.02 2.42 16 47 H 0.04 1.98 8.03 -2.39 -0.02 1.96 16 Total: -1.00 -72.68 390.74 -2.23 -74.91 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: -0.92 Total: 39.33 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 5.11 Total: 16.73 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -5.17 Total: -102.07 kcal Atomic # 8 Polarization: -69.54 SS G_CDS: -3.27 Total: -72.82 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -72.68 -2.23 -74.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591962066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.723 kcal (2) G-P(sol) polarization free energy of solvation -72.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds