Wall clock time and date at job start Tue Mar 31 2020 23:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86807 * 119.99823 * 2 1 4 4 H 1.48500 * 109.47195 * 270.00301 * 3 2 1 5 5 H 1.48495 * 109.47102 * 30.00640 * 3 2 1 6 6 H 1.48502 * 109.46907 * 150.00692 * 3 2 1 7 7 C 1.39894 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00028 * 164.80935 * 7 2 1 9 9 C 1.41157 * 119.99596 * 345.09125 * 7 2 1 10 10 C 1.40861 * 120.16614 * 334.71863 * 9 7 2 11 11 C 1.36373 * 119.83174 * 179.76670 * 10 9 7 12 12 C 1.39480 * 120.16390 * 0.49141 * 11 10 9 13 13 N 1.39247 * 119.83498 * 179.75772 * 12 11 10 14 14 C 1.34781 * 119.99494 * 35.85551 * 13 12 11 15 15 O 1.21575 * 119.99912 * 355.51194 * 14 13 12 16 16 N 1.34775 * 119.99475 * 175.51827 * 14 13 12 17 17 C 1.46502 * 119.99588 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.47023 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.46827 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.51901 * 65.00227 * 19 18 17 21 21 C 1.53174 * 109.51798 * 185.12247 * 19 18 17 22 22 C 1.53177 * 109.03632 * 176.88723 * 21 19 18 23 23 C 1.53091 * 109.16341 * 303.02438 * 22 21 19 24 24 O 1.42899 * 109.41650 * 57.60230 * 23 22 21 25 25 C 1.42902 * 114.15674 * 298.87931 * 24 23 22 26 26 C 1.39487 * 120.33533 * 359.78452 * 12 11 10 27 27 C 1.36367 * 120.16672 * 359.95544 * 26 12 11 28 28 H 0.97004 * 119.99799 * 359.97438 * 1 2 3 29 29 H 1.08007 * 120.08369 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.92070 * 180.22751 * 11 10 9 31 31 H 0.96995 * 120.00387 * 215.85537 * 13 12 11 32 32 H 0.96997 * 120.00302 * 359.97438 * 16 14 13 33 33 H 1.09005 * 109.47080 * 299.99501 * 17 16 14 34 34 H 1.09003 * 109.47463 * 59.99735 * 17 16 14 35 35 H 1.09005 * 109.46899 * 299.99752 * 18 17 16 36 36 H 1.08994 * 109.47205 * 59.99397 * 18 17 16 37 37 H 0.96697 * 113.99616 * 299.99003 * 20 19 18 38 38 H 1.09003 * 109.54807 * 296.75130 * 21 19 18 39 39 H 1.08996 * 109.54518 * 56.93225 * 21 19 18 40 40 H 1.09005 * 109.52111 * 62.92430 * 22 21 19 41 41 H 1.08997 * 109.52813 * 183.05014 * 22 21 19 42 42 H 1.08996 * 109.48244 * 177.59263 * 23 22 21 43 43 H 1.08999 * 109.47827 * 297.62146 * 23 22 21 44 44 H 1.09005 * 109.42903 * 301.10715 * 25 24 23 45 45 H 1.09005 * 109.53659 * 181.07594 * 25 24 23 46 46 H 1.07995 * 119.91434 * 179.97438 * 26 12 11 47 47 H 1.08000 * 120.08598 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4902 2.0466 -1.4001 5 1 1.4403 2.6526 0.7001 6 1 3.5404 1.4402 0.6999 7 6 2.0083 -1.2115 -0.0005 8 1 3.0600 -1.2277 -0.2456 9 6 1.3381 -2.4135 0.3134 10 6 0.1803 -2.3897 1.1154 11 6 -0.4645 -3.5545 1.4106 12 6 0.0256 -4.7684 0.9290 13 7 -0.6354 -5.9542 1.2388 14 6 -1.9803 -5.9733 1.3246 15 8 -2.6114 -4.9402 1.2124 16 7 -2.6256 -7.1378 1.5349 17 6 -4.0875 -7.1587 1.6275 18 6 -4.5629 -8.5933 1.8664 19 6 -6.0897 -8.6150 1.9637 20 8 -6.6538 -8.2346 0.7070 21 6 -6.5592 -10.0264 2.3293 22 6 -8.0813 -10.0180 2.5003 23 6 -8.4619 -8.9852 3.5643 24 8 -7.9688 -7.7010 3.1776 25 6 -6.5472 -7.6353 3.0474 26 6 1.1748 -4.8006 0.1391 27 6 1.8273 -3.6434 -0.1688 28 1 -0.4850 0.8401 0.0004 29 1 -0.1981 -1.4509 1.4921 30 1 -1.3544 -3.5376 2.0223 31 1 -0.1280 -6.7663 1.3929 32 1 -2.1221 -7.9620 1.6241 33 1 -4.4082 -6.5267 2.4557 34 1 -4.5160 -6.7843 0.6978 35 1 -4.2423 -9.2249 1.0379 36 1 -4.1345 -8.9680 2.7959 37 1 -6.3996 -7.3489 0.4139 38 1 -6.2854 -10.7193 1.5337 39 1 -6.0880 -10.3373 3.2617 40 1 -8.5528 -9.7558 1.5531 41 1 -8.4182 -11.0062 2.8135 42 1 -9.5469 -8.9444 3.6597 43 1 -8.0233 -9.2701 4.5206 44 1 -6.0835 -7.9014 3.9973 45 1 -6.2530 -6.6230 2.7701 46 1 1.5485 -5.7442 -0.2298 47 1 2.7167 -3.6698 -0.7809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593138210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:37 Heat of formation + Delta-G solvation = -108.864798 kcal Electronic energy + Delta-G solvation = -28109.287421 eV Core-core repulsion = 24063.538866 eV Total energy + Delta-G solvation = -4045.748555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 7.27 seconds Orbital eigenvalues (eV) -40.49516 -39.76897 -37.55439 -36.93262 -34.97784 -34.29800 -33.43834 -32.95216 -31.84016 -29.46810 -29.17414 -28.21385 -25.70657 -25.11350 -24.08457 -21.87692 -21.38936 -21.05319 -20.48267 -19.96294 -17.98848 -17.42926 -17.27604 -16.87402 -16.43353 -16.20885 -15.63422 -15.30942 -15.05664 -14.80533 -14.55667 -14.43434 -13.96269 -13.83415 -13.64987 -13.34645 -13.01221 -12.95469 -12.66754 -12.28794 -12.14756 -12.03468 -11.80956 -11.65740 -11.55231 -11.40469 -11.24181 -11.08800 -10.92410 -10.75304 -10.55081 -10.46363 -9.99903 -9.86200 -9.56812 -9.49534 -9.20172 -8.93851 -8.64525 -7.47395 -6.95297 -6.67775 -4.25673 2.70962 2.97651 3.09579 3.10888 3.14399 3.19815 3.48780 3.72011 3.84627 3.96649 4.18050 4.30121 4.32926 4.58467 4.62134 4.69506 4.79214 4.79660 4.88241 4.97988 5.13556 5.17327 5.29413 5.36631 5.43712 5.53121 5.67019 5.72217 5.73297 5.76794 5.92004 6.17884 6.42332 6.54255 6.82684 6.84388 6.87839 7.09285 7.14878 7.33309 7.36604 7.38939 7.66595 7.88589 8.05614 8.10494 8.31264 8.50830 8.68658 8.93264 8.96375 9.14206 10.24476 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024845 B = 0.001935 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.729345 B =14467.975096 C =15260.779708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.103 3.897 10 C -0.156 4.156 11 C -0.086 4.086 12 C 0.010 3.990 13 N -0.667 5.667 14 C 0.692 3.308 15 O -0.574 6.574 16 N -0.753 5.753 17 C 0.135 3.865 18 C -0.158 4.158 19 C 0.108 3.892 20 O -0.549 6.549 21 C -0.108 4.108 22 C -0.153 4.153 23 C 0.058 3.942 24 O -0.372 6.372 25 C 0.031 3.969 26 C -0.107 4.107 27 C -0.215 4.215 28 H 0.280 0.720 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.390 0.610 32 H 0.392 0.608 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.380 0.620 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.048 0.952 44 H 0.060 0.940 45 H 0.104 0.896 46 H 0.088 0.912 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.667 -19.533 6.839 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.095 0.905 9 C 0.101 3.899 10 C -0.176 4.176 11 C -0.106 4.106 12 C -0.083 4.083 13 N -0.312 5.312 14 C 0.393 3.607 15 O -0.450 6.450 16 N -0.411 5.411 17 C 0.010 3.990 18 C -0.196 4.196 19 C 0.066 3.934 20 O -0.355 6.355 21 C -0.145 4.145 22 C -0.191 4.191 23 C -0.019 4.019 24 O -0.290 6.290 25 C -0.046 4.046 26 C -0.127 4.127 27 C -0.236 4.236 28 H 0.091 0.909 29 H 0.140 0.860 30 H 0.125 0.875 31 H 0.223 0.777 32 H 0.225 0.775 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.229 0.771 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.122 0.878 46 H 0.107 0.893 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.872 -18.832 6.722 23.780 hybrid contribution 1.308 0.180 -0.024 1.321 sum -11.564 -18.652 6.698 22.945 Atomic orbital electron populations 1.69856 1.07476 1.29147 1.35204 1.25939 0.94773 1.01332 0.92476 0.86308 0.80520 0.80691 0.79145 1.19561 1.20127 1.18528 1.19526 0.97094 0.90970 1.41251 0.90505 1.17680 0.91505 0.92061 0.88680 1.21069 0.98484 0.96804 1.01223 1.20570 0.98838 0.91614 0.99588 1.16999 0.98151 0.84351 1.08761 1.42068 1.04024 1.11840 1.73316 1.16042 0.82286 0.83702 0.78664 1.90939 1.66167 1.31157 1.56761 1.45054 1.06832 1.08767 1.80401 1.21171 0.79934 0.95832 1.02047 1.22482 0.95857 0.97431 1.03873 1.21702 0.90830 0.95646 0.85185 1.86532 1.74424 1.38406 1.36187 1.21568 0.96361 0.94550 1.02022 1.22132 0.96114 0.99593 1.01227 1.22613 0.99762 0.83624 0.95911 1.87989 1.20601 1.30855 1.89560 1.23438 0.82291 1.00912 0.98005 1.20029 0.96721 0.97142 0.98850 1.20532 1.03286 0.92569 1.07168 0.90852 0.85990 0.87541 0.77739 0.77497 0.91472 0.91662 0.89861 0.90150 0.77090 0.90534 0.90521 0.90066 0.90944 0.88837 0.93365 0.92196 0.87837 0.89349 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.16 10.83 55.55 0.60 -20.56 16 2 C 0.07 1.85 5.19 -17.34 -0.09 1.76 16 3 Si 0.91 18.93 29.59 -169.99 -5.03 13.91 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.29 9.05 -37.85 -0.34 -12.64 16 8 H 0.08 1.96 7.89 -52.49 -0.41 1.54 16 9 C 0.10 2.81 5.58 -106.80 -0.60 2.21 16 10 C -0.16 -4.24 8.63 -39.26 -0.34 -4.58 16 11 C -0.09 -2.18 8.61 -39.79 -0.34 -2.52 16 12 C 0.01 0.22 6.30 -83.56 -0.53 -0.30 16 13 N -0.67 -11.75 5.31 -14.10 -0.07 -11.83 16 14 C 0.69 12.34 8.39 -86.91 -0.73 11.61 16 15 O -0.57 -13.01 13.79 5.30 0.07 -12.94 16 16 N -0.75 -9.03 5.56 -65.22 -0.36 -9.39 16 17 C 0.13 1.39 4.98 -4.04 -0.02 1.37 16 18 C -0.16 -1.12 4.63 -26.73 -0.12 -1.25 16 19 C 0.11 0.85 0.76 -90.48 -0.07 0.79 16 20 O -0.55 -5.31 12.39 -42.60 -0.53 -5.83 16 21 C -0.11 -0.73 5.04 -26.55 -0.13 -0.87 16 22 C -0.15 -1.07 5.98 -26.59 -0.16 -1.22 16 23 C 0.06 0.43 6.84 37.20 0.25 0.69 16 24 O -0.37 -3.87 10.69 -42.60 -0.46 -4.32 16 25 C 0.03 0.27 5.21 37.20 0.19 0.46 16 26 C -0.11 -2.37 9.90 -39.79 -0.39 -2.76 16 27 C -0.22 -5.27 9.74 -39.26 -0.38 -5.65 16 28 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 29 H 0.12 3.44 6.09 -52.48 -0.32 3.12 16 30 H 0.11 2.73 6.26 -52.49 -0.33 2.41 16 31 H 0.39 5.22 8.83 -40.82 -0.36 4.86 16 32 H 0.39 3.39 8.49 -40.82 -0.35 3.04 16 33 H 0.07 0.74 6.41 -51.93 -0.33 0.41 16 34 H 0.07 0.73 6.89 -51.93 -0.36 0.38 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.38 3.06 7.53 45.56 0.34 3.41 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.71 7.83 -51.93 -0.41 0.30 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.10 0.93 6.50 -51.93 -0.34 0.59 16 46 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 47 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -33.59 376.59 -10.12 -43.72 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -6.22 Total: 14.48 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -3.80 Total: -12.91 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.16 Total: -41.78 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.91 Total: -23.10 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.59 -10.12 -43.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593138210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.148 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.27 seconds