Wall clock time and date at job start Tue Mar 31 2020 23:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86807 * 119.99823 * 2 1 4 4 H 1.48500 * 109.47195 * 270.00301 * 3 2 1 5 5 H 1.48495 * 109.47102 * 30.00640 * 3 2 1 6 6 H 1.48502 * 109.46907 * 150.00692 * 3 2 1 7 7 C 1.39894 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00028 * 164.80935 * 7 2 1 9 9 C 1.41157 * 119.99596 * 345.09125 * 7 2 1 10 10 C 1.40861 * 120.16614 * 334.71863 * 9 7 2 11 11 C 1.36373 * 119.83174 * 179.76670 * 10 9 7 12 12 C 1.39480 * 120.16390 * 0.49141 * 11 10 9 13 13 N 1.39247 * 119.83498 * 179.75772 * 12 11 10 14 14 C 1.34781 * 119.99494 * 35.85551 * 13 12 11 15 15 O 1.21575 * 119.99912 * 355.51194 * 14 13 12 16 16 N 1.34775 * 119.99475 * 175.51827 * 14 13 12 17 17 C 1.46502 * 119.99588 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.47023 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.46827 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.51901 * 65.00227 * 19 18 17 21 21 C 1.53174 * 109.51798 * 185.12247 * 19 18 17 22 22 C 1.53177 * 109.03632 * 176.88723 * 21 19 18 23 23 C 1.53091 * 109.16341 * 303.02438 * 22 21 19 24 24 O 1.42899 * 109.41650 * 57.60230 * 23 22 21 25 25 C 1.42902 * 114.15674 * 298.87931 * 24 23 22 26 26 C 1.39487 * 120.33533 * 359.78452 * 12 11 10 27 27 C 1.36367 * 120.16672 * 359.95544 * 26 12 11 28 28 H 0.97004 * 119.99799 * 359.97438 * 1 2 3 29 29 H 1.08007 * 120.08369 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.92070 * 180.22751 * 11 10 9 31 31 H 0.96995 * 120.00387 * 215.85537 * 13 12 11 32 32 H 0.96997 * 120.00302 * 359.97438 * 16 14 13 33 33 H 1.09005 * 109.47080 * 299.99501 * 17 16 14 34 34 H 1.09003 * 109.47463 * 59.99735 * 17 16 14 35 35 H 1.09005 * 109.46899 * 299.99752 * 18 17 16 36 36 H 1.08994 * 109.47205 * 59.99397 * 18 17 16 37 37 H 0.96697 * 113.99616 * 299.99003 * 20 19 18 38 38 H 1.09003 * 109.54807 * 296.75130 * 21 19 18 39 39 H 1.08996 * 109.54518 * 56.93225 * 21 19 18 40 40 H 1.09005 * 109.52111 * 62.92430 * 22 21 19 41 41 H 1.08997 * 109.52813 * 183.05014 * 22 21 19 42 42 H 1.08996 * 109.48244 * 177.59263 * 23 22 21 43 43 H 1.08999 * 109.47827 * 297.62146 * 23 22 21 44 44 H 1.09005 * 109.42903 * 301.10715 * 25 24 23 45 45 H 1.09005 * 109.53659 * 181.07594 * 25 24 23 46 46 H 1.07995 * 119.91434 * 179.97438 * 26 12 11 47 47 H 1.08000 * 120.08598 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4902 2.0466 -1.4001 5 1 1.4403 2.6526 0.7001 6 1 3.5404 1.4402 0.6999 7 6 2.0083 -1.2115 -0.0005 8 1 3.0600 -1.2277 -0.2456 9 6 1.3381 -2.4135 0.3134 10 6 0.1803 -2.3897 1.1154 11 6 -0.4645 -3.5545 1.4106 12 6 0.0256 -4.7684 0.9290 13 7 -0.6354 -5.9542 1.2388 14 6 -1.9803 -5.9733 1.3246 15 8 -2.6114 -4.9402 1.2124 16 7 -2.6256 -7.1378 1.5349 17 6 -4.0875 -7.1587 1.6275 18 6 -4.5629 -8.5933 1.8664 19 6 -6.0897 -8.6150 1.9637 20 8 -6.6538 -8.2346 0.7070 21 6 -6.5592 -10.0264 2.3293 22 6 -8.0813 -10.0180 2.5003 23 6 -8.4619 -8.9852 3.5643 24 8 -7.9688 -7.7010 3.1776 25 6 -6.5472 -7.6353 3.0474 26 6 1.1748 -4.8006 0.1391 27 6 1.8273 -3.6434 -0.1688 28 1 -0.4850 0.8401 0.0004 29 1 -0.1981 -1.4509 1.4921 30 1 -1.3544 -3.5376 2.0223 31 1 -0.1280 -6.7663 1.3929 32 1 -2.1221 -7.9620 1.6241 33 1 -4.4082 -6.5267 2.4557 34 1 -4.5160 -6.7843 0.6978 35 1 -4.2423 -9.2249 1.0379 36 1 -4.1345 -8.9680 2.7959 37 1 -6.3996 -7.3489 0.4139 38 1 -6.2854 -10.7193 1.5337 39 1 -6.0880 -10.3373 3.2617 40 1 -8.5528 -9.7558 1.5531 41 1 -8.4182 -11.0062 2.8135 42 1 -9.5469 -8.9444 3.6597 43 1 -8.0233 -9.2701 4.5206 44 1 -6.0835 -7.9014 3.9973 45 1 -6.2530 -6.6230 2.7701 46 1 1.5485 -5.7442 -0.2298 47 1 2.7167 -3.6698 -0.7809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593138210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:23 Heat of formation + Delta-G solvation = -133.918925 kcal Electronic energy + Delta-G solvation = -28110.373849 eV Core-core repulsion = 24063.538866 eV Total energy + Delta-G solvation = -4046.834983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 17.54 seconds Orbital eigenvalues (eV) -41.47647 -40.92317 -39.24066 -37.76928 -36.32005 -35.81189 -34.70784 -34.04103 -32.71065 -31.37146 -30.80474 -29.23042 -26.78007 -26.30565 -25.05353 -23.26662 -22.90178 -22.33138 -21.60589 -21.03735 -19.40536 -19.18569 -18.28185 -18.03212 -17.39787 -17.07978 -16.96775 -16.50326 -16.11337 -15.74582 -15.70505 -15.66546 -15.36996 -15.06008 -14.75174 -14.48196 -14.24959 -14.06285 -13.91756 -13.63117 -13.57039 -13.32962 -12.98279 -12.79473 -12.76077 -12.66880 -12.34269 -12.29464 -12.12532 -11.83220 -11.77885 -11.72100 -11.38247 -11.29069 -11.16397 -10.95616 -10.48221 -10.19870 -10.08782 -9.41955 -8.80880 -8.57200 -6.24864 0.89266 1.17500 1.38787 1.48005 1.54818 1.76249 2.20078 2.24025 2.80287 2.87794 3.25686 3.36347 3.53988 3.73118 3.76964 3.81371 4.05414 4.07925 4.14485 4.23859 4.43644 4.46396 4.49871 4.52624 4.56611 4.70465 4.78984 4.84647 4.96557 4.99751 5.04497 5.09450 5.12616 5.15945 5.21065 5.33272 5.36674 5.45613 5.48227 5.70847 5.82112 6.12121 6.15606 6.21709 6.23233 6.39125 6.72035 6.72192 6.95607 7.05003 7.19505 7.69685 8.36912 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024845 B = 0.001935 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.729345 B =14467.975096 C =15260.779708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.027 3.973 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.493 4.493 8 H 0.082 0.918 9 C 0.069 3.931 10 C -0.181 4.181 11 C -0.101 4.101 12 C 0.026 3.974 13 N -0.657 5.657 14 C 0.689 3.311 15 O -0.627 6.627 16 N -0.726 5.726 17 C 0.132 3.868 18 C -0.141 4.141 19 C 0.107 3.893 20 O -0.566 6.566 21 C -0.109 4.109 22 C -0.150 4.150 23 C 0.051 3.949 24 O -0.402 6.402 25 C 0.027 3.973 26 C -0.101 4.101 27 C -0.222 4.222 28 H 0.285 0.715 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.415 0.585 32 H 0.414 0.586 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.383 0.617 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.135 0.865 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.728 -22.355 7.223 25.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.187 4.187 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.523 4.523 8 H 0.100 0.900 9 C 0.067 3.933 10 C -0.201 4.201 11 C -0.121 4.121 12 C -0.068 4.068 13 N -0.305 5.305 14 C 0.389 3.611 15 O -0.507 6.507 16 N -0.384 5.384 17 C 0.008 3.992 18 C -0.179 4.179 19 C 0.066 3.934 20 O -0.374 6.374 21 C -0.146 4.146 22 C -0.188 4.188 23 C -0.026 4.026 24 O -0.321 6.321 25 C -0.050 4.050 26 C -0.121 4.121 27 C -0.242 4.242 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.252 0.748 32 H 0.251 0.749 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.232 0.768 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.153 0.847 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.927 -21.766 7.122 25.821 hybrid contribution 0.884 0.862 -0.108 1.240 sum -11.043 -20.904 7.014 24.660 Atomic orbital electron populations 1.69950 1.09214 1.30318 1.36408 1.26881 0.95488 1.04935 0.91406 0.85147 0.79036 0.75658 0.79485 1.18621 1.19527 1.17820 1.19817 0.97510 0.91986 1.42961 0.90019 1.18032 0.92037 0.93676 0.89592 1.20958 0.99720 0.96615 1.02812 1.20594 0.98615 0.92681 1.00241 1.17038 0.97859 0.85029 1.06888 1.41811 1.04255 1.11289 1.73150 1.16274 0.82139 0.84426 0.78257 1.90922 1.67206 1.33663 1.58931 1.44803 1.07547 1.07776 1.78253 1.21303 0.78544 0.98138 1.01242 1.22365 0.95149 0.94946 1.05411 1.21827 0.91162 0.96240 0.84193 1.86518 1.75015 1.38704 1.37172 1.21648 0.96228 0.93518 1.03195 1.22103 0.96329 1.00456 0.99924 1.22812 1.00291 0.82692 0.96766 1.87944 1.21542 1.32687 1.89921 1.23493 0.81844 1.00615 0.99026 1.20390 0.95795 0.98326 0.97591 1.20821 1.03883 0.92490 1.07006 0.90417 0.88432 0.88734 0.74753 0.74917 0.92286 0.92924 0.88997 0.87738 0.76799 0.90311 0.88232 0.92414 0.88801 0.88309 0.91691 0.90684 0.89151 0.84744 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.56 10.83 21.82 0.24 -46.33 16 2 C 0.03 1.40 5.19 85.24 0.44 1.84 16 3 Si 0.99 39.55 29.59 68.60 2.03 41.58 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 7 C -0.49 -27.20 9.05 23.39 0.21 -26.99 16 8 H 0.08 4.24 7.89 -2.91 -0.02 4.22 16 9 C 0.07 3.86 5.58 -21.28 -0.12 3.74 16 10 C -0.18 -10.33 8.63 22.48 0.19 -10.13 16 11 C -0.10 -5.28 8.61 22.13 0.19 -5.09 16 12 C 0.03 1.14 6.30 38.56 0.24 1.39 16 13 N -0.66 -21.66 5.31 -316.78 -1.68 -23.34 16 14 C 0.69 23.67 8.39 179.05 1.50 25.17 16 15 O -0.63 -28.88 13.79 -3.95 -0.05 -28.93 16 16 N -0.73 -15.64 5.56 -478.52 -2.66 -18.30 16 17 C 0.13 2.53 4.98 86.38 0.43 2.96 16 18 C -0.14 -1.59 4.63 30.60 0.14 -1.45 16 19 C 0.11 1.51 0.76 -10.71 -0.01 1.50 16 20 O -0.57 -10.72 12.39 -141.94 -1.76 -12.48 16 21 C -0.11 -1.18 5.04 30.71 0.15 -1.03 16 22 C -0.15 -1.83 5.98 30.68 0.18 -1.65 16 23 C 0.05 0.68 6.84 72.01 0.49 1.18 16 24 O -0.40 -8.21 10.69 -141.94 -1.52 -9.73 16 25 C 0.03 0.44 5.21 72.01 0.38 0.82 16 26 C -0.10 -4.23 9.90 22.13 0.22 -4.02 16 27 C -0.22 -10.73 9.74 22.48 0.22 -10.52 16 28 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 29 H 0.10 5.93 6.09 -2.91 -0.02 5.91 16 30 H 0.09 5.10 6.26 -2.91 -0.02 5.08 16 31 H 0.42 9.50 8.83 -92.71 -0.82 8.68 16 32 H 0.41 5.49 8.49 -92.71 -0.79 4.71 16 33 H 0.06 1.27 6.41 -2.38 -0.02 1.26 16 34 H 0.05 1.17 6.89 -2.39 -0.02 1.15 16 35 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.38 6.37 7.53 -74.06 -0.56 5.81 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.98 7.83 -2.38 -0.02 0.96 16 41 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.09 1.66 6.50 -2.38 -0.02 1.64 16 46 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 47 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -77.34 376.59 -1.67 -79.01 By element: Atomic # 1 Polarization: 41.92 SS G_CDS: -1.14 Total: 40.78 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 4.87 Total: -22.27 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -4.11 Total: -87.97 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -3.33 Total: -51.13 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -77.34 -1.67 -79.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593138210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.909 kcal (2) G-P(sol) polarization free energy of solvation -77.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.54 seconds