Wall clock time and date at job start Tue Mar 31 2020 23:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86795 * 120.00028 * 2 1 4 4 H 1.48500 * 109.47114 * 275.16320 * 3 2 1 5 5 H 1.48493 * 109.47403 * 35.16470 * 3 2 1 6 6 H 1.48501 * 109.47203 * 155.16423 * 3 2 1 7 7 C 1.39893 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00770 * 344.11632 * 7 2 1 9 9 C 1.41160 * 119.99743 * 164.12011 * 7 2 1 10 10 C 1.40868 * 120.16355 * 152.13223 * 9 7 2 11 11 C 1.36374 * 119.82570 * 179.97438 * 10 9 7 12 12 C 1.39478 * 120.17432 * 0.02562 * 11 10 9 13 13 N 1.39245 * 119.83903 * 179.97438 * 12 11 10 14 14 C 1.34774 * 119.99870 * 214.70528 * 13 12 11 15 15 O 1.21585 * 120.00464 * 5.28811 * 14 13 12 16 16 N 1.34777 * 119.99809 * 185.28371 * 14 13 12 17 17 C 1.46493 * 120.00285 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47609 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47823 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.52129 * 300.12998 * 19 18 17 21 21 C 1.53173 * 109.52776 * 179.97438 * 19 18 17 22 22 C 1.53176 * 109.03883 * 183.11359 * 21 19 18 23 23 C 1.53096 * 109.15899 * 56.98513 * 22 21 19 24 24 O 1.42909 * 109.41180 * 302.38650 * 23 22 21 25 25 C 1.42906 * 114.09553 * 61.16666 * 24 23 22 26 26 C 1.39486 * 120.32885 * 359.97438 * 12 11 10 27 27 C 1.36373 * 120.16913 * 359.97438 * 26 12 11 28 28 H 0.96998 * 119.99708 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.08784 * 359.70455 * 10 9 7 30 30 H 1.08007 * 119.91633 * 179.97438 * 11 10 9 31 31 H 0.96992 * 119.99704 * 34.70055 * 13 12 11 32 32 H 0.96999 * 119.99691 * 0.02562 * 16 14 13 33 33 H 1.09002 * 109.47050 * 300.00121 * 17 16 14 34 34 H 1.08998 * 109.47162 * 59.99960 * 17 16 14 35 35 H 1.08996 * 109.47211 * 300.00446 * 18 17 16 36 36 H 1.09007 * 109.46913 * 59.99955 * 18 17 16 37 37 H 0.96699 * 113.99792 * 59.99548 * 20 19 18 38 38 H 1.09003 * 109.54454 * 302.98625 * 21 19 18 39 39 H 1.09003 * 109.53824 * 63.15907 * 21 19 18 40 40 H 1.09001 * 109.52385 * 176.88667 * 22 21 19 41 41 H 1.09000 * 109.52068 * 297.07816 * 22 21 19 42 42 H 1.08996 * 109.48447 * 62.37485 * 23 22 21 43 43 H 1.08996 * 109.47628 * 182.41151 * 23 22 21 44 44 H 1.08997 * 109.47694 * 178.85814 * 25 24 23 45 45 H 1.08992 * 109.48225 * 58.81693 * 25 24 23 46 46 H 1.08003 * 119.91314 * 179.97438 * 26 12 11 47 47 H 1.08003 * 120.08294 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3812 2.1094 -1.3944 5 1 1.4992 2.6187 0.8063 6 1 3.5907 1.4111 0.5881 7 6 2.0082 -1.2116 -0.0005 8 1 1.4992 -2.1292 0.2550 9 6 3.3794 -1.2348 -0.3351 10 6 4.2196 -2.2353 0.1916 11 6 5.5432 -2.2515 -0.1365 12 6 6.0656 -1.2806 -0.9908 13 7 7.4182 -1.3034 -1.3208 14 6 8.0865 -0.1476 -1.5049 15 8 7.5352 0.9145 -1.2894 16 7 9.3660 -0.1691 -1.9278 17 6 10.0928 1.0872 -2.1273 18 6 11.5137 0.7839 -2.6065 19 6 12.2726 2.0959 -2.8156 20 8 11.5966 2.8877 -3.7944 21 6 13.6956 1.7935 -3.2948 22 6 14.4689 3.1093 -3.4256 23 6 14.4518 3.8381 -2.0794 24 8 13.0988 4.0609 -1.6771 25 6 12.3402 2.8639 -1.4929 26 6 5.2398 -0.2867 -1.5163 27 6 3.9141 -0.2582 -1.1981 28 1 -0.4849 0.8401 0.0004 29 1 3.8176 -2.9849 0.8570 30 1 6.1888 -3.0177 0.2668 31 1 7.8793 -2.1511 -1.4182 32 1 9.8057 -1.0164 -2.1000 33 1 9.5781 1.6897 -2.8758 34 1 10.1356 1.6355 -1.1863 35 1 12.0286 0.1812 -1.8584 36 1 11.4705 0.2357 -3.5477 37 1 10.6887 3.1187 -3.5548 38 1 14.1943 1.1477 -2.5720 39 1 13.6559 1.2945 -4.2631 40 1 15.4992 2.8992 -3.7130 41 1 13.9983 3.7344 -4.1844 42 1 14.9584 3.2298 -1.3302 43 1 14.9640 4.7952 -2.1778 44 1 11.3313 3.1192 -1.1688 45 1 12.8192 2.2429 -0.7361 46 1 5.6515 0.4620 -2.1768 47 1 3.2760 0.5122 -1.6054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593138211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:08 Heat of formation + Delta-G solvation = -107.826164 kcal Electronic energy + Delta-G solvation = -28257.990914 eV Core-core repulsion = 24212.287397 eV Total energy + Delta-G solvation = -4045.703516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.62 seconds Orbital eigenvalues (eV) -40.56794 -39.92617 -37.82213 -37.04924 -35.06040 -34.39195 -33.49477 -33.11069 -31.94726 -29.92737 -29.65416 -28.44529 -25.73295 -25.11913 -24.06867 -21.92428 -21.78916 -21.29475 -20.54204 -20.03765 -18.22080 -17.50033 -17.40310 -17.05548 -16.69051 -16.30072 -15.76043 -15.36089 -15.20768 -14.88633 -14.61995 -14.53905 -14.01403 -13.83913 -13.71409 -13.57879 -13.25981 -13.05676 -12.67325 -12.51214 -12.36359 -12.24777 -12.19898 -11.93702 -11.70352 -11.61930 -11.29609 -10.88293 -10.81280 -10.75622 -10.62392 -10.54474 -10.21430 -9.75390 -9.69479 -9.59837 -9.12645 -9.07295 -8.99095 -7.76061 -7.14660 -6.92904 -4.40686 2.47646 2.73615 2.86665 3.17904 3.28418 3.41133 3.43107 3.56113 3.78586 4.04893 4.11324 4.22980 4.26433 4.50656 4.53735 4.54317 4.70838 4.73251 4.80155 4.92546 5.07855 5.10182 5.23787 5.30974 5.37599 5.45719 5.48025 5.60858 5.64195 5.67757 5.87192 5.92711 6.14490 6.41508 6.44349 6.62929 6.76594 6.77715 6.90187 6.99600 7.18724 7.30293 7.45526 7.62448 7.68313 7.89231 8.10901 8.31650 8.35932 8.64604 8.81495 8.95066 10.08852 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022841 B = 0.002132 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.560541 B =13127.611124 C =13918.517591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.082 3.918 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.240 1.240 7 C -0.440 4.440 8 H 0.091 0.909 9 C 0.086 3.914 10 C -0.198 4.198 11 C -0.095 4.095 12 C 0.009 3.991 13 N -0.667 5.667 14 C 0.694 3.306 15 O -0.577 6.577 16 N -0.751 5.751 17 C 0.134 3.866 18 C -0.158 4.158 19 C 0.108 3.892 20 O -0.548 6.548 21 C -0.108 4.108 22 C -0.153 4.153 23 C 0.058 3.942 24 O -0.372 6.372 25 C 0.031 3.969 26 C -0.060 4.060 27 C -0.229 4.229 28 H 0.285 0.715 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.392 0.608 32 H 0.393 0.607 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.380 0.620 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.106 0.894 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.913 1.826 -5.317 28.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.163 1.163 7 C -0.468 4.468 8 H 0.109 0.891 9 C 0.083 3.917 10 C -0.218 4.218 11 C -0.115 4.115 12 C -0.083 4.083 13 N -0.313 5.313 14 C 0.394 3.606 15 O -0.454 6.454 16 N -0.408 5.408 17 C 0.010 3.990 18 C -0.196 4.196 19 C 0.066 3.934 20 O -0.355 6.355 21 C -0.145 4.145 22 C -0.191 4.191 23 C -0.019 4.019 24 O -0.290 6.290 25 C -0.046 4.046 26 C -0.080 4.080 27 C -0.249 4.249 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.225 0.775 32 H 0.226 0.774 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.229 0.771 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.120 0.880 45 H 0.078 0.922 46 H 0.124 0.876 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 27.614 3.048 -5.391 28.300 hybrid contribution 0.238 -0.399 0.114 0.478 sum 27.852 2.648 -5.277 28.471 Atomic orbital electron populations 1.69702 1.08050 1.30301 1.35255 1.26195 0.94793 1.01879 0.90810 0.86298 0.81356 0.79462 0.78856 1.19764 1.22129 1.16320 1.19474 0.92428 0.95819 1.39115 0.89134 1.17778 0.93243 0.91047 0.89665 1.20542 0.92549 1.03347 1.05380 1.20142 0.95873 0.98311 0.97189 1.16864 0.80860 1.03381 1.07230 1.42057 1.09728 1.06428 1.73069 1.16010 0.80725 0.84955 0.78886 1.90943 1.67729 1.29376 1.57306 1.45020 1.12541 1.09025 1.74262 1.21164 0.90347 0.86368 1.01142 1.22468 0.95404 0.98544 1.03216 1.21706 0.93022 0.89399 0.89255 1.86539 1.31039 1.72652 1.45291 1.21570 0.92453 0.97860 1.02619 1.22135 1.00621 0.97179 0.99145 1.22623 0.83630 1.01000 0.94670 1.87997 1.23059 1.29516 1.88418 1.23414 0.97650 0.87720 0.95823 1.20305 0.92771 0.96835 0.98087 1.20648 0.95017 1.03752 1.05479 0.90428 0.87810 0.88635 0.77463 0.77350 0.91550 0.91479 0.90117 0.89863 0.77113 0.90513 0.90494 0.90901 0.90041 0.93339 0.88808 0.87991 0.92182 0.87624 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.87 13.93 55.54 0.77 -21.10 16 2 C 0.08 2.20 5.44 -17.34 -0.09 2.11 16 3 Si 0.91 22.01 24.39 -169.99 -4.15 17.87 16 4 H -0.27 -6.42 6.71 56.52 0.38 -6.04 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.24 -6.09 6.65 56.52 0.38 -5.71 16 7 C -0.44 -12.01 9.58 -37.85 -0.36 -12.37 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 9 C 0.09 2.21 5.18 -106.80 -0.55 1.66 16 10 C -0.20 -4.55 9.74 -39.26 -0.38 -4.94 16 11 C -0.09 -1.94 9.90 -39.79 -0.39 -2.33 16 12 C 0.01 0.20 6.26 -83.57 -0.52 -0.33 16 13 N -0.67 -10.83 5.31 -14.10 -0.07 -10.91 16 14 C 0.69 11.50 8.28 -86.92 -0.72 10.78 16 15 O -0.58 -12.33 14.09 5.29 0.07 -12.25 16 16 N -0.75 -8.24 5.56 -65.23 -0.36 -8.60 16 17 C 0.13 1.27 5.02 -4.05 -0.02 1.25 16 18 C -0.16 -1.01 4.60 -26.73 -0.12 -1.14 16 19 C 0.11 0.79 0.76 -90.48 -0.07 0.72 16 20 O -0.55 -5.04 12.36 -42.63 -0.53 -5.57 16 21 C -0.11 -0.68 5.04 -26.55 -0.13 -0.81 16 22 C -0.15 -1.00 5.98 -26.59 -0.16 -1.16 16 23 C 0.06 0.40 6.84 37.21 0.25 0.66 16 24 O -0.37 -3.67 10.70 -42.63 -0.46 -4.13 16 25 C 0.03 0.25 5.36 37.21 0.20 0.45 16 26 C -0.06 -1.41 8.57 -39.79 -0.34 -1.76 16 27 C -0.23 -5.81 6.98 -39.26 -0.27 -6.08 16 28 H 0.29 7.02 8.30 -40.82 -0.34 6.68 16 29 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 30 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 31 H 0.39 4.72 8.83 -40.82 -0.36 4.36 16 32 H 0.39 3.01 8.49 -40.82 -0.35 2.66 16 33 H 0.07 0.69 6.78 -51.93 -0.35 0.33 16 34 H 0.07 0.69 6.50 -51.93 -0.34 0.35 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.38 2.88 7.34 45.56 0.33 3.22 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.68 7.83 -51.93 -0.41 0.27 16 42 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.84 6.58 -51.93 -0.34 0.50 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.11 2.50 6.49 -52.48 -0.34 2.16 16 47 H 0.10 2.57 4.27 -52.48 -0.22 2.34 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -33.51 371.05 -9.03 -42.54 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.21 Total: 9.85 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -3.70 Total: -13.29 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.34 Total: -40.61 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.91 Total: -21.95 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.15 Total: 17.87 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.51 -9.03 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593138211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.285 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.62 seconds