Wall clock time and date at job start Tue Mar 31 2020 23:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86795 * 120.00028 * 2 1 4 4 H 1.48500 * 109.47114 * 275.16320 * 3 2 1 5 5 H 1.48493 * 109.47403 * 35.16470 * 3 2 1 6 6 H 1.48501 * 109.47203 * 155.16423 * 3 2 1 7 7 C 1.39893 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00770 * 344.11632 * 7 2 1 9 9 C 1.41160 * 119.99743 * 164.12011 * 7 2 1 10 10 C 1.40868 * 120.16355 * 152.13223 * 9 7 2 11 11 C 1.36374 * 119.82570 * 179.97438 * 10 9 7 12 12 C 1.39478 * 120.17432 * 0.02562 * 11 10 9 13 13 N 1.39245 * 119.83903 * 179.97438 * 12 11 10 14 14 C 1.34774 * 119.99870 * 214.70528 * 13 12 11 15 15 O 1.21585 * 120.00464 * 5.28811 * 14 13 12 16 16 N 1.34777 * 119.99809 * 185.28371 * 14 13 12 17 17 C 1.46493 * 120.00285 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47609 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47823 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.52129 * 300.12998 * 19 18 17 21 21 C 1.53173 * 109.52776 * 179.97438 * 19 18 17 22 22 C 1.53176 * 109.03883 * 183.11359 * 21 19 18 23 23 C 1.53096 * 109.15899 * 56.98513 * 22 21 19 24 24 O 1.42909 * 109.41180 * 302.38650 * 23 22 21 25 25 C 1.42906 * 114.09553 * 61.16666 * 24 23 22 26 26 C 1.39486 * 120.32885 * 359.97438 * 12 11 10 27 27 C 1.36373 * 120.16913 * 359.97438 * 26 12 11 28 28 H 0.96998 * 119.99708 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.08784 * 359.70455 * 10 9 7 30 30 H 1.08007 * 119.91633 * 179.97438 * 11 10 9 31 31 H 0.96992 * 119.99704 * 34.70055 * 13 12 11 32 32 H 0.96999 * 119.99691 * 0.02562 * 16 14 13 33 33 H 1.09002 * 109.47050 * 300.00121 * 17 16 14 34 34 H 1.08998 * 109.47162 * 59.99960 * 17 16 14 35 35 H 1.08996 * 109.47211 * 300.00446 * 18 17 16 36 36 H 1.09007 * 109.46913 * 59.99955 * 18 17 16 37 37 H 0.96699 * 113.99792 * 59.99548 * 20 19 18 38 38 H 1.09003 * 109.54454 * 302.98625 * 21 19 18 39 39 H 1.09003 * 109.53824 * 63.15907 * 21 19 18 40 40 H 1.09001 * 109.52385 * 176.88667 * 22 21 19 41 41 H 1.09000 * 109.52068 * 297.07816 * 22 21 19 42 42 H 1.08996 * 109.48447 * 62.37485 * 23 22 21 43 43 H 1.08996 * 109.47628 * 182.41151 * 23 22 21 44 44 H 1.08997 * 109.47694 * 178.85814 * 25 24 23 45 45 H 1.08992 * 109.48225 * 58.81693 * 25 24 23 46 46 H 1.08003 * 119.91314 * 179.97438 * 26 12 11 47 47 H 1.08003 * 120.08294 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3812 2.1094 -1.3944 5 1 1.4992 2.6187 0.8063 6 1 3.5907 1.4111 0.5881 7 6 2.0082 -1.2116 -0.0005 8 1 1.4992 -2.1292 0.2550 9 6 3.3794 -1.2348 -0.3351 10 6 4.2196 -2.2353 0.1916 11 6 5.5432 -2.2515 -0.1365 12 6 6.0656 -1.2806 -0.9908 13 7 7.4182 -1.3034 -1.3208 14 6 8.0865 -0.1476 -1.5049 15 8 7.5352 0.9145 -1.2894 16 7 9.3660 -0.1691 -1.9278 17 6 10.0928 1.0872 -2.1273 18 6 11.5137 0.7839 -2.6065 19 6 12.2726 2.0959 -2.8156 20 8 11.5966 2.8877 -3.7944 21 6 13.6956 1.7935 -3.2948 22 6 14.4689 3.1093 -3.4256 23 6 14.4518 3.8381 -2.0794 24 8 13.0988 4.0609 -1.6771 25 6 12.3402 2.8639 -1.4929 26 6 5.2398 -0.2867 -1.5163 27 6 3.9141 -0.2582 -1.1981 28 1 -0.4849 0.8401 0.0004 29 1 3.8176 -2.9849 0.8570 30 1 6.1888 -3.0177 0.2668 31 1 7.8793 -2.1511 -1.4182 32 1 9.8057 -1.0164 -2.1000 33 1 9.5781 1.6897 -2.8758 34 1 10.1356 1.6355 -1.1863 35 1 12.0286 0.1812 -1.8584 36 1 11.4705 0.2357 -3.5477 37 1 10.6887 3.1187 -3.5548 38 1 14.1943 1.1477 -2.5720 39 1 13.6559 1.2945 -4.2631 40 1 15.4992 2.8992 -3.7130 41 1 13.9983 3.7344 -4.1844 42 1 14.9584 3.2298 -1.3302 43 1 14.9640 4.7952 -2.1778 44 1 11.3313 3.1192 -1.1688 45 1 12.8192 2.2429 -0.7361 46 1 5.6515 0.4620 -2.1768 47 1 3.2760 0.5122 -1.6054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593138211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:49 Heat of formation + Delta-G solvation = -134.065391 kcal Electronic energy + Delta-G solvation = -28259.128732 eV Core-core repulsion = 24212.287397 eV Total energy + Delta-G solvation = -4046.841335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 11.10 seconds Orbital eigenvalues (eV) -41.53929 -40.95009 -39.46093 -37.79975 -36.32751 -35.82227 -34.90735 -34.05163 -32.75812 -31.73282 -31.27624 -29.31354 -26.67833 -26.27118 -25.02683 -23.63074 -23.01292 -22.34235 -21.61387 -21.04731 -19.64341 -19.22121 -18.53184 -18.11769 -17.49519 -17.14772 -16.94689 -16.55219 -16.18263 -15.84423 -15.66373 -15.64560 -15.47253 -15.21337 -14.96519 -14.55718 -14.36345 -14.24786 -14.13184 -13.96051 -13.71765 -13.57062 -12.98718 -12.80560 -12.73384 -12.69390 -12.39638 -12.29686 -12.14439 -12.08502 -11.83719 -11.66887 -11.41523 -11.31099 -11.10986 -11.00369 -10.74490 -10.20595 -10.11585 -9.58956 -8.91871 -8.90827 -6.41290 0.67030 0.88089 1.23761 1.35137 1.45902 1.71447 2.09012 2.13819 2.64464 2.87869 3.24909 3.31730 3.53333 3.53623 3.72880 3.79963 4.04966 4.07208 4.14009 4.23010 4.24171 4.34528 4.43620 4.49637 4.56780 4.65662 4.70516 4.79175 4.83975 4.95856 4.96510 4.96947 5.03135 5.08126 5.13035 5.15748 5.33053 5.36005 5.43752 5.52289 5.68325 5.89380 5.93750 6.14035 6.21408 6.24783 6.40032 6.71357 6.72270 6.84745 7.14162 7.63586 8.16252 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022841 B = 0.002132 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.560541 B =13127.611124 C =13918.517591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.052 3.948 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.473 4.473 8 H 0.066 0.934 9 C 0.062 3.938 10 C -0.198 4.198 11 C -0.088 4.088 12 C 0.040 3.960 13 N -0.658 5.658 14 C 0.691 3.309 15 O -0.627 6.627 16 N -0.725 5.725 17 C 0.132 3.868 18 C -0.141 4.141 19 C 0.107 3.893 20 O -0.567 6.567 21 C -0.109 4.109 22 C -0.151 4.151 23 C 0.051 3.949 24 O -0.402 6.402 25 C 0.027 3.973 26 C -0.081 4.081 27 C -0.241 4.241 28 H 0.293 0.707 29 H 0.117 0.883 30 H 0.146 0.854 31 H 0.418 0.582 32 H 0.415 0.585 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.382 0.618 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.130 0.345 -5.363 32.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.163 4.163 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.503 4.503 8 H 0.085 0.915 9 C 0.059 3.941 10 C -0.218 4.218 11 C -0.108 4.108 12 C -0.055 4.055 13 N -0.306 5.306 14 C 0.391 3.609 15 O -0.507 6.507 16 N -0.382 5.382 17 C 0.007 3.993 18 C -0.179 4.179 19 C 0.065 3.935 20 O -0.375 6.375 21 C -0.146 4.146 22 C -0.189 4.189 23 C -0.025 4.025 24 O -0.321 6.321 25 C -0.049 4.049 26 C -0.102 4.102 27 C -0.261 4.261 28 H 0.103 0.897 29 H 0.136 0.864 30 H 0.163 0.837 31 H 0.256 0.744 32 H 0.252 0.748 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.232 0.768 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.120 0.880 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 31.906 1.519 -5.463 32.406 hybrid contribution -0.715 -0.005 0.066 0.718 sum 31.191 1.515 -5.398 31.691 Atomic orbital electron populations 1.69715 1.08678 1.31208 1.37753 1.26648 0.95289 1.03609 0.90767 0.85568 0.79344 0.77602 0.78788 1.19608 1.20427 1.18555 1.19454 0.93605 0.95334 1.41920 0.91550 1.17937 0.93149 0.92481 0.90542 1.20838 0.93523 1.02526 1.04938 1.20530 0.95366 0.98908 0.96037 1.17023 0.82649 1.01290 1.04497 1.41850 1.08028 1.07920 1.72842 1.16230 0.82066 0.84016 0.78576 1.90931 1.69290 1.31219 1.59277 1.44795 1.10551 1.10813 1.72066 1.21288 0.91845 0.85468 1.00670 1.22352 0.93094 0.98330 1.04157 1.21839 0.93707 0.89350 0.88602 1.86527 1.31451 1.73239 1.46287 1.21649 0.91671 0.97964 1.03328 1.22107 1.01639 0.96966 0.98166 1.22807 0.82568 1.01808 0.95335 1.87952 1.24532 1.30870 1.88745 1.23488 0.97231 0.87575 0.96654 1.20416 0.92589 0.98140 0.99011 1.20681 0.95829 1.03723 1.05874 0.89661 0.86450 0.83659 0.74392 0.74810 0.92731 0.92184 0.87686 0.89071 0.76819 0.88180 0.90422 0.88880 0.92477 0.91614 0.88391 0.89062 0.90526 0.88029 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.60 13.93 21.82 0.30 -47.30 16 2 C 0.05 2.87 5.44 85.24 0.46 3.33 16 3 Si 0.96 46.91 24.39 68.60 1.67 48.59 16 4 H -0.27 -12.89 6.71 99.48 0.67 -12.22 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.26 -13.48 6.65 99.48 0.66 -12.82 16 7 C -0.47 -26.93 9.58 23.39 0.22 -26.70 16 8 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 9 C 0.06 3.22 5.18 -21.27 -0.11 3.11 16 10 C -0.20 -8.82 9.74 22.48 0.22 -8.60 16 11 C -0.09 -3.28 9.90 22.13 0.22 -3.06 16 12 C 0.04 1.55 6.26 38.56 0.24 1.79 16 13 N -0.66 -18.78 5.31 -316.78 -1.68 -20.46 16 14 C 0.69 20.92 8.28 179.06 1.48 22.41 16 15 O -0.63 -26.03 14.09 -3.98 -0.06 -26.09 16 16 N -0.72 -13.28 5.56 -478.56 -2.66 -15.94 16 17 C 0.13 2.16 5.02 86.38 0.43 2.59 16 18 C -0.14 -1.31 4.60 30.59 0.14 -1.17 16 19 C 0.11 1.32 0.76 -10.70 -0.01 1.32 16 20 O -0.57 -9.97 12.36 -141.91 -1.75 -11.73 16 21 C -0.11 -1.05 5.04 30.71 0.15 -0.89 16 22 C -0.15 -1.69 5.98 30.69 0.18 -1.50 16 23 C 0.05 0.63 6.84 72.01 0.49 1.12 16 24 O -0.40 -7.57 10.70 -141.91 -1.52 -9.09 16 25 C 0.03 0.39 5.36 72.01 0.39 0.78 16 26 C -0.08 -3.78 8.57 22.14 0.19 -3.59 16 27 C -0.24 -12.39 6.98 22.48 0.16 -12.23 16 28 H 0.29 14.90 8.30 -92.71 -0.77 14.13 16 29 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 30 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.42 7.80 8.83 -92.71 -0.82 6.98 16 32 H 0.41 4.26 8.49 -92.71 -0.79 3.48 16 33 H 0.05 1.06 6.78 -2.39 -0.02 1.05 16 34 H 0.06 1.12 6.50 -2.39 -0.02 1.11 16 35 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.38 5.81 7.34 -74.06 -0.54 5.27 16 38 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.92 7.83 -2.39 -0.02 0.90 16 42 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.09 1.45 6.58 -2.39 -0.02 1.43 16 45 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.10 4.80 6.49 -2.91 -0.02 4.78 16 47 H 0.09 4.68 4.27 -2.91 -0.01 4.67 16 Total: -1.00 -76.20 371.05 -2.03 -78.23 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -1.21 Total: 25.09 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 4.87 Total: -21.30 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -4.04 Total: -83.70 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -3.33 Total: -46.91 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.67 Total: 48.59 kcal Total: -76.20 -2.03 -78.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593138211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.838 kcal (2) G-P(sol) polarization free energy of solvation -76.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.10 seconds