Wall clock time and date at job start Tue Mar 31 2020 22:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99722 * 2 1 4 4 H 1.48498 * 109.47058 * 270.00173 * 3 2 1 5 5 H 1.48501 * 109.47134 * 29.99974 * 3 2 1 6 6 H 1.48500 * 109.47062 * 150.00579 * 3 2 1 7 7 C 1.37869 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47280 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47217 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47320 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.46864 * 304.99978 * 12 11 10 14 14 N 1.46894 * 109.47377 * 64.99932 * 12 11 10 15 15 C 1.50699 * 109.47030 * 185.00615 * 12 11 10 16 16 O 1.21288 * 119.99700 * 259.99546 * 15 12 11 17 17 N 1.34770 * 120.00351 * 80.00013 * 15 12 11 18 18 C 1.46497 * 120.00065 * 179.97438 * 17 15 12 19 19 C 1.53006 * 109.47169 * 180.02562 * 18 17 15 20 20 H 1.09001 * 109.70055 * 304.42024 * 19 18 17 21 21 C 1.53464 * 109.74096 * 183.81958 * 19 18 17 22 22 O 1.43183 * 108.23429 * 180.55184 * 21 19 18 23 23 C 1.36111 * 116.69497 * 46.25230 * 22 21 19 24 24 C 1.38703 * 119.39213 * 163.02682 * 23 22 21 25 25 C 1.38196 * 120.06576 * 180.09412 * 24 23 22 26 26 C 1.38255 * 120.11173 * 359.47653 * 25 24 23 27 27 C 1.38201 * 120.10919 * 0.33654 * 26 25 24 28 28 C 1.38701 * 120.07087 * 359.96733 * 27 26 25 29 29 O 1.36106 * 119.39571 * 179.77368 * 28 27 26 30 30 H 0.96997 * 120.00057 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.46794 * 60.00301 * 9 7 2 32 32 H 1.09005 * 109.47069 * 300.00296 * 9 7 2 33 33 H 1.09007 * 109.47030 * 59.99867 * 10 9 7 34 34 H 1.08998 * 109.47628 * 300.00391 * 10 9 7 35 35 H 1.09004 * 109.46676 * 60.00493 * 11 10 9 36 36 H 1.08998 * 109.47649 * 300.00361 * 11 10 9 37 37 H 1.00901 * 111.00509 * 296.05469 * 14 12 11 38 38 H 1.00909 * 110.99806 * 60.00129 * 14 12 11 39 39 H 0.97007 * 119.99908 * 359.97438 * 17 15 12 40 40 H 1.09004 * 109.46949 * 60.00155 * 18 17 15 41 41 H 1.08995 * 109.47634 * 299.99707 * 18 17 15 42 42 H 1.08997 * 109.71336 * 300.23605 * 21 19 18 43 43 H 1.09005 * 109.71653 * 60.86799 * 21 19 18 44 44 H 1.07998 * 119.96926 * 359.81706 * 24 23 22 45 45 H 1.08002 * 119.94846 * 179.76222 * 25 24 23 46 46 H 1.07992 * 119.94650 * 180.31475 * 26 25 24 47 47 H 1.08008 * 119.96288 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5468 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 6 2.4747 -6.1500 0.0008 13 1 3.1589 -6.0435 -0.8411 14 7 3.2378 -6.1412 1.2559 15 6 1.7253 -7.4516 -0.1226 16 8 1.5130 -8.1249 0.8637 17 7 1.2912 -7.8676 -1.3287 18 6 0.5632 -9.1332 -1.4486 19 6 0.1876 -9.3688 -2.9131 20 1 -0.3783 -8.5164 -3.2889 21 6 -0.6573 -10.6443 -3.0328 22 8 -0.9791 -10.8406 -4.4141 23 6 0.0404 -10.7015 -5.3051 24 6 -0.1014 -11.2122 -6.5869 25 6 0.9256 -11.0805 -7.5022 26 6 2.0927 -10.4303 -7.1464 27 6 2.2389 -9.9159 -5.8721 28 6 1.2144 -10.0501 -4.9467 29 8 1.3749 -9.5423 -3.6941 30 1 -0.4850 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 2.8721 -3.6042 0.8895 34 1 2.8721 -3.6043 -0.8904 35 1 0.8536 -5.0450 -0.8897 36 1 0.8540 -5.0446 0.8902 37 1 3.7994 -5.3064 1.3319 38 1 2.6254 -6.2386 2.0521 39 1 1.4608 -7.3290 -2.1175 40 1 -0.3423 -9.0903 -0.8433 41 1 1.1949 -9.9502 -1.1001 42 1 -0.0891 -11.4977 -2.6628 43 1 -1.5743 -10.5337 -2.4539 44 1 -1.0136 -11.7170 -6.8687 45 1 0.8146 -11.4822 -8.4986 46 1 2.8915 -10.3245 -7.8653 47 1 3.1518 -9.4087 -5.5965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594427106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:33 Heat of formation + Delta-G solvation = -101.029251 kcal Electronic energy + Delta-G solvation = -27836.284733 eV Core-core repulsion = 23790.875953 eV Total energy + Delta-G solvation = -4045.408780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 16.08 seconds Orbital eigenvalues (eV) -41.72254 -39.88166 -38.20484 -37.69174 -36.13732 -35.09154 -33.37935 -32.00568 -31.26399 -31.02610 -29.31695 -28.03373 -26.74315 -25.10349 -23.77779 -23.06818 -22.34103 -21.24465 -20.26924 -20.04763 -19.20009 -17.97575 -17.62834 -17.13767 -16.35310 -16.30773 -15.63845 -15.45101 -15.41446 -15.00127 -14.92618 -14.70210 -14.51045 -14.48466 -14.26193 -14.12928 -13.71824 -13.44338 -13.09804 -12.83132 -12.46500 -12.28916 -12.20297 -12.04072 -11.84952 -11.60214 -11.43229 -11.24420 -10.90044 -10.84942 -10.74145 -10.59275 -9.87871 -9.79448 -9.41793 -9.27581 -9.16390 -9.03731 -8.50915 -8.46334 -8.39792 -6.05166 -4.08185 0.91550 0.92730 2.49259 2.66465 2.72753 2.92592 3.28333 3.34461 3.34925 3.38016 3.80227 4.10137 4.21665 4.29283 4.41244 4.61232 4.67708 4.76895 4.81240 4.84741 4.91413 5.01108 5.03399 5.15675 5.21209 5.29601 5.30786 5.35352 5.48539 5.73354 5.76899 5.78868 5.93260 6.09537 6.18245 6.22760 6.24259 6.50214 6.54217 6.70402 6.99267 7.00824 7.12406 7.40499 7.58355 7.60088 7.72569 7.93774 8.18660 8.35686 8.98917 9.56470 11.06031 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.002070 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.848688 B =13520.244937 C =14612.426255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.147 4.147 12 C 0.076 3.924 13 H 0.100 0.900 14 N -0.830 5.830 15 C 0.527 3.473 16 O -0.534 6.534 17 N -0.730 5.730 18 C 0.133 3.867 19 C 0.039 3.961 20 H 0.096 0.904 21 C 0.031 3.969 22 O -0.304 6.304 23 C 0.047 3.953 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.115 4.115 27 C -0.113 4.113 28 C 0.054 3.946 29 O -0.300 6.300 30 H 0.261 0.739 31 H 0.015 0.985 32 H 0.015 0.985 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.352 0.648 38 H 0.349 0.651 39 H 0.406 0.594 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.127 0.873 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.384 -24.971 -12.661 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.186 4.186 12 C -0.039 4.039 13 H 0.118 0.882 14 N -0.362 5.362 15 C 0.314 3.686 16 O -0.410 6.410 17 N -0.384 5.384 18 C 0.009 3.991 19 C -0.018 4.018 20 H 0.113 0.887 21 C -0.045 4.045 22 O -0.219 6.219 23 C 0.002 3.998 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.134 4.134 27 C -0.131 4.131 28 C 0.009 3.991 29 O -0.215 6.215 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.167 0.833 38 H 0.163 0.837 39 H 0.241 0.759 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.145 0.855 44 H 0.152 0.848 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.412 -26.003 -12.129 28.695 hybrid contribution -0.207 2.147 -0.098 2.159 sum 0.205 -23.855 -12.226 26.807 Atomic orbital electron populations 1.69964 1.06082 1.26666 1.50749 1.25038 0.94860 0.99338 0.95277 0.86590 0.79850 0.83422 0.78122 1.20642 1.21209 1.19848 1.21241 0.93015 0.91056 1.50718 0.92669 1.19080 0.93930 0.91308 0.97199 1.21655 0.99148 0.93461 1.00412 1.22413 0.98315 0.95147 1.02766 1.21425 0.95524 0.91115 0.95823 0.88197 1.58686 1.28199 1.46116 1.03234 1.20755 0.78287 0.87242 0.82346 1.90665 1.56471 1.56828 1.37017 1.45844 1.58976 1.23114 1.10485 1.21209 0.98384 0.88009 0.91488 1.23441 0.86645 0.99039 0.92684 0.88652 1.23573 1.02395 0.97176 0.81393 1.86337 1.32659 1.86979 1.15881 1.18959 0.88673 1.00421 0.91740 1.20457 1.00581 1.01371 0.90884 1.20942 0.93040 1.00122 0.99464 1.20958 0.98231 0.98674 0.95501 1.20513 0.98676 1.02141 0.91794 1.18943 0.95521 0.98470 0.86210 1.86365 1.32106 1.79692 1.23290 0.92965 0.96645 0.96708 0.93293 0.93006 0.91620 0.91723 0.83273 0.83734 0.75905 0.88922 0.90091 0.89956 0.85469 0.84824 0.85045 0.84979 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.06 4.92 -26.73 -0.13 -2.19 16 11 C -0.15 -2.29 4.84 -26.73 -0.13 -2.42 16 12 C 0.08 1.04 3.21 -68.87 -0.22 0.82 16 13 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 14 N -0.83 -11.61 8.94 -5.65 -0.05 -11.66 16 15 C 0.53 7.36 7.08 -10.99 -0.08 7.28 16 16 O -0.53 -9.12 16.25 5.55 0.09 -9.03 16 17 N -0.73 -7.87 5.51 -60.29 -0.33 -8.20 16 18 C 0.13 1.19 5.37 -4.04 -0.02 1.17 16 19 C 0.04 0.32 3.06 -26.49 -0.08 0.24 16 20 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 21 C 0.03 0.22 6.56 37.40 0.25 0.46 16 22 O -0.30 -2.91 10.42 -32.87 -0.34 -3.26 16 23 C 0.05 0.46 6.49 -39.14 -0.25 0.21 16 24 C -0.11 -0.94 9.96 -39.43 -0.39 -1.34 16 25 C -0.12 -0.81 10.04 -39.59 -0.40 -1.21 16 26 C -0.12 -0.82 10.04 -39.59 -0.40 -1.22 16 27 C -0.11 -0.99 9.96 -39.42 -0.39 -1.38 16 28 C 0.05 0.54 6.49 -39.14 -0.25 0.29 16 29 O -0.30 -3.04 10.02 -32.86 -0.33 -3.37 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.89 6.87 -51.92 -0.36 0.54 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.35 4.62 7.55 -39.29 -0.30 4.33 16 38 H 0.35 5.02 8.58 -39.29 -0.34 4.69 16 39 H 0.41 3.82 8.47 -40.82 -0.35 3.47 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.13 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 392.17 15.07 5.91 5.91 Total: -1.00 -34.05 392.17 -9.61 -43.66 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -7.22 Total: 7.69 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.06 Total: -12.18 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.35 Total: -45.81 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.58 Total: -15.66 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.05 -9.61 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594427106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.370 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.08 seconds