Wall clock time and date at job start Tue Mar 31 2020 22:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99722 * 2 1 4 4 H 1.48498 * 109.47058 * 270.00173 * 3 2 1 5 5 H 1.48501 * 109.47134 * 29.99974 * 3 2 1 6 6 H 1.48500 * 109.47062 * 150.00579 * 3 2 1 7 7 C 1.37869 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47280 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47217 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47320 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.46864 * 304.99978 * 12 11 10 14 14 N 1.46894 * 109.47377 * 64.99932 * 12 11 10 15 15 C 1.50699 * 109.47030 * 185.00615 * 12 11 10 16 16 O 1.21288 * 119.99700 * 259.99546 * 15 12 11 17 17 N 1.34770 * 120.00351 * 80.00013 * 15 12 11 18 18 C 1.46497 * 120.00065 * 179.97438 * 17 15 12 19 19 C 1.53006 * 109.47169 * 180.02562 * 18 17 15 20 20 H 1.09001 * 109.70055 * 304.42024 * 19 18 17 21 21 C 1.53464 * 109.74096 * 183.81958 * 19 18 17 22 22 O 1.43183 * 108.23429 * 180.55184 * 21 19 18 23 23 C 1.36111 * 116.69497 * 46.25230 * 22 21 19 24 24 C 1.38703 * 119.39213 * 163.02682 * 23 22 21 25 25 C 1.38196 * 120.06576 * 180.09412 * 24 23 22 26 26 C 1.38255 * 120.11173 * 359.47653 * 25 24 23 27 27 C 1.38201 * 120.10919 * 0.33654 * 26 25 24 28 28 C 1.38701 * 120.07087 * 359.96733 * 27 26 25 29 29 O 1.36106 * 119.39571 * 179.77368 * 28 27 26 30 30 H 0.96997 * 120.00057 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.46794 * 60.00301 * 9 7 2 32 32 H 1.09005 * 109.47069 * 300.00296 * 9 7 2 33 33 H 1.09007 * 109.47030 * 59.99867 * 10 9 7 34 34 H 1.08998 * 109.47628 * 300.00391 * 10 9 7 35 35 H 1.09004 * 109.46676 * 60.00493 * 11 10 9 36 36 H 1.08998 * 109.47649 * 300.00361 * 11 10 9 37 37 H 1.00901 * 111.00509 * 296.05469 * 14 12 11 38 38 H 1.00909 * 110.99806 * 60.00129 * 14 12 11 39 39 H 0.97007 * 119.99908 * 359.97438 * 17 15 12 40 40 H 1.09004 * 109.46949 * 60.00155 * 18 17 15 41 41 H 1.08995 * 109.47634 * 299.99707 * 18 17 15 42 42 H 1.08997 * 109.71336 * 300.23605 * 21 19 18 43 43 H 1.09005 * 109.71653 * 60.86799 * 21 19 18 44 44 H 1.07998 * 119.96926 * 359.81706 * 24 23 22 45 45 H 1.08002 * 119.94846 * 179.76222 * 25 24 23 46 46 H 1.07992 * 119.94650 * 180.31475 * 26 25 24 47 47 H 1.08008 * 119.96288 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5468 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 6 2.4747 -6.1500 0.0008 13 1 3.1589 -6.0435 -0.8411 14 7 3.2378 -6.1412 1.2559 15 6 1.7253 -7.4516 -0.1226 16 8 1.5130 -8.1249 0.8637 17 7 1.2912 -7.8676 -1.3287 18 6 0.5632 -9.1332 -1.4486 19 6 0.1876 -9.3688 -2.9131 20 1 -0.3783 -8.5164 -3.2889 21 6 -0.6573 -10.6443 -3.0328 22 8 -0.9791 -10.8406 -4.4141 23 6 0.0404 -10.7015 -5.3051 24 6 -0.1014 -11.2122 -6.5869 25 6 0.9256 -11.0805 -7.5022 26 6 2.0927 -10.4303 -7.1464 27 6 2.2389 -9.9159 -5.8721 28 6 1.2144 -10.0501 -4.9467 29 8 1.3749 -9.5423 -3.6941 30 1 -0.4850 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 2.8721 -3.6042 0.8895 34 1 2.8721 -3.6043 -0.8904 35 1 0.8536 -5.0450 -0.8897 36 1 0.8540 -5.0446 0.8902 37 1 3.7994 -5.3064 1.3319 38 1 2.6254 -6.2386 2.0521 39 1 1.4608 -7.3290 -2.1175 40 1 -0.3423 -9.0903 -0.8433 41 1 1.1949 -9.9502 -1.1001 42 1 -0.0891 -11.4977 -2.6628 43 1 -1.5743 -10.5337 -2.4539 44 1 -1.0136 -11.7170 -6.8687 45 1 0.8146 -11.4822 -8.4986 46 1 2.8915 -10.3245 -7.8653 47 1 3.1518 -9.4087 -5.5965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594427106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:27 Heat of formation + Delta-G solvation = -125.142509 kcal Electronic energy + Delta-G solvation = -27837.330363 eV Core-core repulsion = 23790.875953 eV Total energy + Delta-G solvation = -4046.454410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.28 seconds Orbital eigenvalues (eV) -42.36459 -40.95995 -38.83653 -38.35275 -37.45766 -36.04668 -35.27273 -33.01474 -32.72498 -31.62162 -30.01639 -29.41965 -27.83021 -26.35896 -24.74481 -23.90563 -23.55399 -21.98907 -21.79690 -21.06328 -19.86525 -18.62093 -18.59157 -18.45504 -17.94583 -17.14688 -16.54950 -16.37403 -16.33508 -16.19225 -16.00981 -15.81357 -15.57258 -15.45458 -15.01523 -14.84174 -14.71820 -14.61969 -14.27077 -13.95714 -13.72896 -13.64722 -13.43373 -12.92469 -12.82834 -12.77178 -12.56667 -12.42635 -12.36623 -12.17871 -12.06184 -11.55191 -11.50467 -11.42966 -11.26902 -10.80355 -10.56596 -10.22966 -9.68385 -9.64661 -9.10052 -8.21159 -6.32274 0.30500 0.31762 1.39925 1.40782 1.51767 1.54746 1.82514 2.03554 2.16530 2.40146 2.74295 3.12328 3.16329 3.42844 3.58331 3.66430 3.69049 3.76798 3.98248 4.08103 4.10624 4.16854 4.23715 4.36487 4.39660 4.41797 4.45495 4.54753 4.59727 4.64919 4.76159 4.89344 5.00846 5.16978 5.17614 5.22332 5.22893 5.28935 5.51369 5.52798 5.70927 5.72448 5.84489 5.87229 6.03927 6.23163 6.36541 6.42612 6.48715 6.85688 7.14442 7.37501 8.90444 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.002070 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.848688 B =13520.244937 C =14612.426255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.023 3.977 10 C -0.095 4.095 11 C -0.134 4.134 12 C 0.084 3.916 13 H 0.119 0.881 14 N -0.832 5.832 15 C 0.526 3.474 16 O -0.569 6.569 17 N -0.719 5.719 18 C 0.135 3.865 19 C 0.044 3.956 20 H 0.097 0.903 21 C 0.029 3.971 22 O -0.317 6.317 23 C 0.026 3.974 24 C -0.125 4.125 25 C -0.114 4.114 26 C -0.115 4.115 27 C -0.127 4.127 28 C 0.031 3.969 29 O -0.315 6.315 30 H 0.263 0.737 31 H -0.008 1.008 32 H -0.014 1.014 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.357 0.643 38 H 0.346 0.654 39 H 0.414 0.586 40 H 0.104 0.896 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.153 0.847 44 H 0.146 0.854 45 H 0.160 0.840 46 H 0.158 0.842 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.543 -25.381 -14.057 29.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.014 4.014 10 C -0.133 4.133 11 C -0.174 4.174 12 C -0.031 4.031 13 H 0.137 0.863 14 N -0.365 5.365 15 C 0.313 3.687 16 O -0.447 6.447 17 N -0.372 5.372 18 C 0.011 3.989 19 C -0.012 4.012 20 H 0.114 0.886 21 C -0.047 4.047 22 O -0.232 6.232 23 C -0.019 4.019 24 C -0.143 4.143 25 C -0.132 4.132 26 C -0.133 4.133 27 C -0.146 4.146 28 C -0.014 4.014 29 O -0.230 6.230 30 H 0.071 0.929 31 H 0.010 0.990 32 H 0.004 0.996 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.172 0.828 38 H 0.159 0.841 39 H 0.250 0.750 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.170 0.830 44 H 0.163 0.837 45 H 0.178 0.822 46 H 0.176 0.824 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.584 -26.423 -13.560 29.741 hybrid contribution -0.585 2.231 0.274 2.323 sum 0.999 -24.192 -13.286 27.618 Atomic orbital electron populations 1.70100 1.07840 1.27714 1.51868 1.26001 0.95754 1.03455 0.94865 0.85463 0.78696 0.78495 0.78507 1.19722 1.21035 1.18625 1.21727 0.93657 0.92325 1.50189 0.91890 1.19007 0.94491 0.93280 0.94617 1.21437 0.97960 0.92631 1.01276 1.22228 0.98319 0.94398 1.02439 1.21367 0.95154 0.90137 0.96422 0.86314 1.58704 1.28154 1.46354 1.03248 1.20750 0.78172 0.87124 0.82676 1.90652 1.57943 1.57850 1.38257 1.45789 1.57949 1.23587 1.09844 1.21292 0.98457 0.86821 0.92310 1.23406 0.86352 0.99731 0.91746 0.88557 1.23757 1.03509 0.96633 0.80755 1.86308 1.32999 1.87154 1.16747 1.19240 0.88842 1.01263 0.92521 1.20781 1.01580 1.01348 0.90631 1.21328 0.92329 0.99156 1.00390 1.21320 0.99028 0.97657 0.95246 1.20777 0.98686 1.02647 0.92462 1.19200 0.96265 0.99468 0.86440 1.86317 1.33031 1.79998 1.23704 0.92859 0.98993 0.99605 0.92570 0.91894 0.91037 0.93090 0.82751 0.84062 0.74972 0.87820 0.90644 0.89618 0.82966 0.83663 0.82202 0.82433 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.54 4.92 30.59 0.15 -3.39 16 11 C -0.13 -4.10 4.84 30.59 0.15 -3.95 16 12 C 0.08 2.20 3.21 44.17 0.14 2.34 16 13 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 14 N -0.83 -22.39 8.94 -171.80 -1.54 -23.92 16 15 C 0.53 14.24 7.08 87.66 0.62 14.86 16 16 O -0.57 -19.18 16.25 -3.05 -0.05 -19.23 16 17 N -0.72 -14.81 5.51 -463.06 -2.55 -17.36 16 18 C 0.13 2.32 5.37 86.38 0.46 2.78 16 19 C 0.04 0.70 3.06 30.75 0.09 0.79 16 20 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 21 C 0.03 0.39 6.56 72.14 0.47 0.86 16 22 O -0.32 -5.95 10.42 -82.58 -0.86 -6.81 16 23 C 0.03 0.51 6.49 22.56 0.15 0.65 16 24 C -0.12 -1.93 9.96 22.37 0.22 -1.71 16 25 C -0.11 -1.35 10.04 22.26 0.22 -1.12 16 26 C -0.11 -1.43 10.04 22.26 0.22 -1.20 16 27 C -0.13 -2.14 9.96 22.37 0.22 -1.92 16 28 C 0.03 0.62 6.49 22.56 0.15 0.77 16 29 O -0.32 -6.34 10.02 -82.54 -0.83 -7.17 16 30 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 31 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 32 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 33 H 0.06 2.00 6.87 -2.38 -0.02 1.98 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.36 8.87 7.55 -89.69 -0.68 8.19 16 38 H 0.35 9.80 8.58 -89.69 -0.77 9.03 16 39 H 0.41 7.29 8.47 -92.70 -0.79 6.51 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.15 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 46 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 47 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -73.86 392.17 -0.62 -74.48 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -1.23 Total: 29.07 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 4.12 Total: -18.45 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -3.80 Total: -97.61 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.74 Total: -33.22 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -73.86 -0.62 -74.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594427106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.661 kcal (2) G-P(sol) polarization free energy of solvation -73.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.28 seconds