Wall clock time and date at job start Tue Mar 31 2020 22:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00145 * 2 1 4 4 H 1.48496 * 109.47556 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47304 * 300.00779 * 3 2 1 6 6 H 1.48506 * 109.47271 * 60.00101 * 3 2 1 7 7 C 1.37884 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99846 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47322 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47345 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47345 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47080 * 54.99155 * 12 11 10 14 14 N 1.46905 * 109.46631 * 294.99589 * 12 11 10 15 15 C 1.50700 * 109.47277 * 174.99661 * 12 11 10 16 16 O 1.21283 * 119.99803 * 99.99659 * 15 12 11 17 17 N 1.34777 * 119.99675 * 280.27534 * 15 12 11 18 18 C 1.46497 * 119.99525 * 179.72583 * 17 15 12 19 19 C 1.52999 * 109.46992 * 179.97438 * 18 17 15 20 20 H 1.08998 * 109.70825 * 59.41129 * 19 18 17 21 21 C 1.53477 * 109.71387 * 180.02562 * 19 18 17 22 22 O 1.43169 * 108.25160 * 179.41996 * 21 19 18 23 23 C 1.36109 * 116.71707 * 313.82481 * 22 21 19 24 24 C 1.38701 * 119.40201 * 197.18089 * 23 22 21 25 25 C 1.38189 * 120.06793 * 180.16932 * 24 23 22 26 26 C 1.38250 * 120.11485 * 0.02562 * 25 24 23 27 27 C 1.38194 * 120.11124 * 359.90188 * 26 25 24 28 28 C 1.38705 * 120.06639 * 0.04471 * 27 26 25 29 29 O 1.36102 * 119.39147 * 180.28155 * 28 27 26 30 30 H 0.97000 * 120.00222 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.47559 * 59.99859 * 9 7 2 32 32 H 1.09007 * 109.47175 * 300.00425 * 9 7 2 33 33 H 1.08994 * 109.47048 * 59.99474 * 10 9 7 34 34 H 1.09008 * 109.46752 * 299.99518 * 10 9 7 35 35 H 1.09000 * 109.47628 * 59.99145 * 11 10 9 36 36 H 1.09003 * 109.46966 * 299.99492 * 11 10 9 37 37 H 1.00898 * 110.99843 * 299.99868 * 14 12 11 38 38 H 1.00899 * 110.99818 * 63.95660 * 14 12 11 39 39 H 0.97000 * 119.99894 * 359.71837 * 17 15 12 40 40 H 1.08995 * 109.47421 * 299.99467 * 18 17 15 41 41 H 1.09001 * 109.47621 * 60.00103 * 18 17 15 42 42 H 1.09005 * 109.70541 * 299.11020 * 21 19 18 43 43 H 1.08993 * 109.70744 * 59.68545 * 21 19 18 44 44 H 1.08006 * 119.96482 * 0.16039 * 24 23 22 45 45 H 1.07998 * 119.94277 * 179.97438 * 25 24 23 46 46 H 1.07999 * 119.94403 * 179.97438 * 26 25 24 47 47 H 1.08008 * 119.96755 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4746 -6.1501 -0.0005 13 1 3.1582 -6.0432 0.8417 14 7 3.2385 -6.1418 -1.2553 15 6 1.7251 -7.4516 0.1227 16 8 1.5134 -8.1252 -0.8634 17 7 1.2852 -7.8643 1.3280 18 6 0.5514 -9.1267 1.4469 19 6 0.1699 -9.3589 2.9103 20 1 -0.4510 -8.5356 3.2634 21 6 -0.5988 -10.6808 3.0414 22 8 -0.9276 -10.8733 4.4214 23 6 0.0683 -10.6573 5.3237 24 6 -0.0587 -11.1579 6.6109 25 6 0.9425 -10.9436 7.5390 26 6 2.0729 -10.2295 7.1875 27 6 2.2064 -9.7293 5.9062 28 6 1.2057 -9.9417 4.9695 29 8 1.3540 -9.4478 3.7100 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5568 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 2.8720 -3.6043 0.8894 34 1 2.8719 -3.6044 -0.8906 35 1 0.8539 -5.0446 -0.8913 36 1 0.8535 -5.0451 0.8887 37 1 2.6267 -6.2395 -2.0517 38 1 3.8002 -5.3071 -1.3311 39 1 1.4545 -7.3256 2.1166 40 1 -0.3519 -9.0806 0.8386 41 1 1.1807 -9.9468 1.1014 42 1 -1.5126 -10.6349 2.4487 43 1 0.0242 -11.5044 2.6929 44 1 -0.9411 -11.7156 6.8883 45 1 0.8413 -11.3340 8.5409 46 1 2.8535 -10.0634 7.9152 47 1 3.0907 -9.1721 5.6340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594427112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:22 Heat of formation + Delta-G solvation = -101.027268 kcal Electronic energy + Delta-G solvation = -27860.541617 eV Core-core repulsion = 23815.132923 eV Total energy + Delta-G solvation = -4045.408694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.72302 -39.87817 -38.20442 -37.69313 -36.13330 -35.08265 -33.37923 -32.00720 -31.26370 -31.02391 -29.31886 -28.03317 -26.74031 -25.10085 -23.77647 -23.06773 -22.34229 -21.23206 -20.27012 -20.05151 -19.18666 -17.97643 -17.62944 -17.13543 -16.35527 -16.29701 -15.64387 -15.44026 -15.43631 -15.00248 -14.92316 -14.69974 -14.50665 -14.48877 -14.25937 -14.12803 -13.70583 -13.44346 -13.09458 -12.82421 -12.46792 -12.29006 -12.20311 -12.04165 -11.84588 -11.59745 -11.42670 -11.24654 -10.90104 -10.85788 -10.73891 -10.57794 -9.87511 -9.79596 -9.41827 -9.26909 -9.15137 -9.03556 -8.50703 -8.46223 -8.40217 -6.05358 -4.08228 0.91795 0.92879 2.48224 2.66728 2.73294 2.94075 3.27367 3.34647 3.35177 3.38976 3.80110 4.10499 4.21753 4.29370 4.41256 4.61420 4.67778 4.77409 4.81389 4.84971 4.91490 5.01457 5.03830 5.16172 5.21512 5.29867 5.30736 5.35126 5.48604 5.73586 5.77079 5.79050 5.93510 6.09810 6.18580 6.22980 6.24466 6.50451 6.54385 6.70587 6.99388 7.00917 7.12720 7.41224 7.58627 7.60368 7.72579 7.93750 8.19114 8.35760 8.99137 9.56446 11.05894 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012687 B = 0.002093 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.433698 B =13373.359109 C =14523.591830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.147 4.147 12 C 0.076 3.924 13 H 0.100 0.900 14 N -0.830 5.830 15 C 0.527 3.473 16 O -0.535 6.535 17 N -0.730 5.730 18 C 0.134 3.866 19 C 0.039 3.961 20 H 0.096 0.904 21 C 0.031 3.969 22 O -0.304 6.304 23 C 0.047 3.953 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.115 4.115 27 C -0.113 4.113 28 C 0.054 3.946 29 O -0.300 6.300 30 H 0.260 0.740 31 H 0.015 0.985 32 H 0.015 0.985 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.349 0.651 38 H 0.352 0.648 39 H 0.407 0.593 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.127 0.873 43 H 0.082 0.918 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 -24.853 12.712 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.186 4.186 12 C -0.039 4.039 13 H 0.118 0.882 14 N -0.362 5.362 15 C 0.314 3.686 16 O -0.410 6.410 17 N -0.384 5.384 18 C 0.009 3.991 19 C -0.018 4.018 20 H 0.113 0.887 21 C -0.045 4.045 22 O -0.219 6.219 23 C 0.002 3.998 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.134 4.134 27 C -0.131 4.131 28 C 0.009 3.991 29 O -0.215 6.215 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.241 0.759 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.145 0.855 43 H 0.100 0.900 44 H 0.152 0.848 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.451 -25.890 12.184 28.617 hybrid contribution -0.223 2.140 0.084 2.154 sum 0.229 -23.750 12.269 26.732 Atomic orbital electron populations 1.69970 1.06088 1.26556 1.50834 1.25041 0.94858 0.99353 0.95287 0.86539 0.80116 0.83750 0.77612 1.19707 1.20999 1.20992 1.21280 0.93054 0.91041 1.50590 0.92611 1.19087 0.93935 0.91325 0.97202 1.21654 0.99146 0.93457 1.00413 1.22411 0.98313 0.95142 1.02764 1.21425 0.95525 0.91113 0.95826 0.88198 1.58683 1.28192 1.46118 1.03246 1.20756 0.78314 0.87224 0.82343 1.90663 1.56593 1.56755 1.36995 1.45826 1.58600 1.23373 1.10565 1.21216 0.98272 0.88115 0.91470 1.23446 0.87010 0.99030 0.92327 0.88656 1.23570 1.02817 0.96714 0.81444 1.86331 1.34524 1.85513 1.15489 1.18956 0.89621 0.99701 0.91513 1.20458 1.00704 1.01447 0.90691 1.20939 0.93489 0.99751 0.99390 1.20958 0.98400 0.98515 0.95479 1.20515 0.98929 1.02040 0.91629 1.18941 0.96142 0.98072 0.85973 1.86355 1.32874 1.80072 1.22150 0.93020 0.96703 0.96647 0.93000 0.93296 0.91723 0.91627 0.83737 0.83277 0.75859 0.88935 0.90165 0.85486 0.89964 0.84830 0.85048 0.84973 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.06 4.92 -26.73 -0.13 -2.19 16 11 C -0.15 -2.29 4.84 -26.73 -0.13 -2.42 16 12 C 0.08 1.04 3.21 -68.86 -0.22 0.82 16 13 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 14 N -0.83 -11.62 8.94 -5.65 -0.05 -11.67 16 15 C 0.53 7.37 7.08 -10.98 -0.08 7.29 16 16 O -0.53 -9.13 16.25 5.55 0.09 -9.04 16 17 N -0.73 -7.90 5.46 -60.30 -0.33 -8.23 16 18 C 0.13 1.20 5.39 -4.04 -0.02 1.17 16 19 C 0.04 0.32 3.10 -26.48 -0.08 0.23 16 20 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 21 C 0.03 0.22 6.56 37.40 0.25 0.46 16 22 O -0.30 -2.91 10.42 -32.88 -0.34 -3.25 16 23 C 0.05 0.46 6.49 -39.14 -0.25 0.21 16 24 C -0.11 -0.95 9.96 -39.43 -0.39 -1.34 16 25 C -0.12 -0.81 10.04 -39.60 -0.40 -1.21 16 26 C -0.12 -0.83 10.04 -39.59 -0.40 -1.22 16 27 C -0.11 -0.99 9.96 -39.43 -0.39 -1.38 16 28 C 0.05 0.54 6.49 -39.14 -0.25 0.29 16 29 O -0.30 -3.04 9.88 -32.85 -0.32 -3.36 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.89 6.87 -51.92 -0.36 0.54 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.35 5.03 8.58 -39.29 -0.34 4.69 16 38 H 0.35 4.62 7.55 -39.29 -0.30 4.33 16 39 H 0.41 3.87 8.39 -40.82 -0.34 3.53 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 45 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 46 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -34.05 391.95 -9.61 -43.66 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.22 Total: 7.72 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.06 Total: -12.17 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.36 Total: -45.85 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.58 Total: -15.66 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.05 -9.61 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594427112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.365 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds