Wall clock time and date at job start Tue Mar 31 2020 22:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00145 * 2 1 4 4 H 1.48496 * 109.47556 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47304 * 300.00779 * 3 2 1 6 6 H 1.48506 * 109.47271 * 60.00101 * 3 2 1 7 7 C 1.37884 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99846 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47322 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47345 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47345 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47080 * 54.99155 * 12 11 10 14 14 N 1.46905 * 109.46631 * 294.99589 * 12 11 10 15 15 C 1.50700 * 109.47277 * 174.99661 * 12 11 10 16 16 O 1.21283 * 119.99803 * 99.99659 * 15 12 11 17 17 N 1.34777 * 119.99675 * 280.27534 * 15 12 11 18 18 C 1.46497 * 119.99525 * 179.72583 * 17 15 12 19 19 C 1.52999 * 109.46992 * 179.97438 * 18 17 15 20 20 H 1.08998 * 109.70825 * 59.41129 * 19 18 17 21 21 C 1.53477 * 109.71387 * 180.02562 * 19 18 17 22 22 O 1.43169 * 108.25160 * 179.41996 * 21 19 18 23 23 C 1.36109 * 116.71707 * 313.82481 * 22 21 19 24 24 C 1.38701 * 119.40201 * 197.18089 * 23 22 21 25 25 C 1.38189 * 120.06793 * 180.16932 * 24 23 22 26 26 C 1.38250 * 120.11485 * 0.02562 * 25 24 23 27 27 C 1.38194 * 120.11124 * 359.90188 * 26 25 24 28 28 C 1.38705 * 120.06639 * 0.04471 * 27 26 25 29 29 O 1.36102 * 119.39147 * 180.28155 * 28 27 26 30 30 H 0.97000 * 120.00222 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.47559 * 59.99859 * 9 7 2 32 32 H 1.09007 * 109.47175 * 300.00425 * 9 7 2 33 33 H 1.08994 * 109.47048 * 59.99474 * 10 9 7 34 34 H 1.09008 * 109.46752 * 299.99518 * 10 9 7 35 35 H 1.09000 * 109.47628 * 59.99145 * 11 10 9 36 36 H 1.09003 * 109.46966 * 299.99492 * 11 10 9 37 37 H 1.00898 * 110.99843 * 299.99868 * 14 12 11 38 38 H 1.00899 * 110.99818 * 63.95660 * 14 12 11 39 39 H 0.97000 * 119.99894 * 359.71837 * 17 15 12 40 40 H 1.08995 * 109.47421 * 299.99467 * 18 17 15 41 41 H 1.09001 * 109.47621 * 60.00103 * 18 17 15 42 42 H 1.09005 * 109.70541 * 299.11020 * 21 19 18 43 43 H 1.08993 * 109.70744 * 59.68545 * 21 19 18 44 44 H 1.08006 * 119.96482 * 0.16039 * 24 23 22 45 45 H 1.07998 * 119.94277 * 179.97438 * 25 24 23 46 46 H 1.07999 * 119.94403 * 179.97438 * 26 25 24 47 47 H 1.08008 * 119.96755 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4746 -6.1501 -0.0005 13 1 3.1582 -6.0432 0.8417 14 7 3.2385 -6.1418 -1.2553 15 6 1.7251 -7.4516 0.1227 16 8 1.5134 -8.1252 -0.8634 17 7 1.2852 -7.8643 1.3280 18 6 0.5514 -9.1267 1.4469 19 6 0.1699 -9.3589 2.9103 20 1 -0.4510 -8.5356 3.2634 21 6 -0.5988 -10.6808 3.0414 22 8 -0.9276 -10.8733 4.4214 23 6 0.0683 -10.6573 5.3237 24 6 -0.0587 -11.1579 6.6109 25 6 0.9425 -10.9436 7.5390 26 6 2.0729 -10.2295 7.1875 27 6 2.2064 -9.7293 5.9062 28 6 1.2057 -9.9417 4.9695 29 8 1.3540 -9.4478 3.7100 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5568 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 2.8720 -3.6043 0.8894 34 1 2.8719 -3.6044 -0.8906 35 1 0.8539 -5.0446 -0.8913 36 1 0.8535 -5.0451 0.8887 37 1 2.6267 -6.2395 -2.0517 38 1 3.8002 -5.3071 -1.3311 39 1 1.4545 -7.3256 2.1166 40 1 -0.3519 -9.0806 0.8386 41 1 1.1807 -9.9468 1.1014 42 1 -1.5126 -10.6349 2.4487 43 1 0.0242 -11.5044 2.6929 44 1 -0.9411 -11.7156 6.8883 45 1 0.8413 -11.3340 8.5409 46 1 2.8535 -10.0634 7.9152 47 1 3.0907 -9.1721 5.6340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594427112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:21 Heat of formation + Delta-G solvation = -125.103598 kcal Electronic energy + Delta-G solvation = -27861.585645 eV Core-core repulsion = 23815.132923 eV Total energy + Delta-G solvation = -4046.452722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.36528 -40.95810 -38.83735 -38.35391 -37.45635 -36.03759 -35.27410 -33.01557 -32.72739 -31.62066 -30.01786 -29.42163 -27.82901 -26.35673 -24.74373 -23.90317 -23.55932 -21.97556 -21.79585 -21.07270 -19.85459 -18.61855 -18.59388 -18.45949 -17.94724 -17.13819 -16.54843 -16.37544 -16.34785 -16.19017 -16.00442 -15.81345 -15.58459 -15.45676 -15.01235 -14.83921 -14.71226 -14.62421 -14.27776 -13.95070 -13.72655 -13.64181 -13.42954 -12.94086 -12.82941 -12.77554 -12.58052 -12.39399 -12.36954 -12.17380 -12.05731 -11.55163 -11.50898 -11.43137 -11.25419 -10.80225 -10.57485 -10.22454 -9.68309 -9.64614 -9.10027 -8.21430 -6.32393 0.30620 0.31791 1.39309 1.40060 1.52800 1.54950 1.80600 2.06104 2.16534 2.40018 2.74358 3.12174 3.16222 3.43241 3.58433 3.66476 3.69207 3.76931 3.98357 4.08085 4.10648 4.16920 4.24137 4.36515 4.39673 4.42328 4.45684 4.54887 4.59767 4.64832 4.76147 4.89371 5.00780 5.16934 5.17628 5.22268 5.22870 5.29288 5.51531 5.52916 5.70963 5.72347 5.84445 5.87339 6.03965 6.23159 6.36544 6.43071 6.48880 6.85790 7.14647 7.37381 8.90411 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012687 B = 0.002093 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.433698 B =13373.359109 C =14523.591830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.023 3.977 10 C -0.095 4.095 11 C -0.134 4.134 12 C 0.084 3.916 13 H 0.119 0.881 14 N -0.832 5.832 15 C 0.526 3.474 16 O -0.569 6.569 17 N -0.718 5.718 18 C 0.135 3.865 19 C 0.044 3.956 20 H 0.096 0.904 21 C 0.029 3.971 22 O -0.317 6.317 23 C 0.026 3.974 24 C -0.125 4.125 25 C -0.114 4.114 26 C -0.115 4.115 27 C -0.127 4.127 28 C 0.031 3.969 29 O -0.315 6.315 30 H 0.263 0.737 31 H -0.014 1.014 32 H -0.008 1.008 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.346 0.654 38 H 0.357 0.643 39 H 0.414 0.586 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.153 0.847 43 H 0.085 0.915 44 H 0.146 0.854 45 H 0.160 0.840 46 H 0.158 0.842 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.569 -25.258 14.092 28.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.081 0.919 9 C -0.014 4.014 10 C -0.133 4.133 11 C -0.174 4.174 12 C -0.031 4.031 13 H 0.137 0.863 14 N -0.365 5.365 15 C 0.313 3.687 16 O -0.447 6.447 17 N -0.371 5.371 18 C 0.011 3.989 19 C -0.012 4.012 20 H 0.114 0.886 21 C -0.047 4.047 22 O -0.232 6.232 23 C -0.019 4.019 24 C -0.143 4.143 25 C -0.132 4.132 26 C -0.133 4.133 27 C -0.146 4.146 28 C -0.014 4.014 29 O -0.230 6.230 30 H 0.071 0.929 31 H 0.004 0.996 32 H 0.010 0.990 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.159 0.841 38 H 0.172 0.828 39 H 0.250 0.750 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.170 0.830 43 H 0.104 0.896 44 H 0.163 0.837 45 H 0.178 0.822 46 H 0.176 0.824 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.614 -26.305 13.599 29.656 hybrid contribution -0.600 2.226 -0.283 2.322 sum 1.014 -24.080 13.316 27.535 Atomic orbital electron populations 1.70102 1.07846 1.27657 1.51926 1.26001 0.95753 1.03462 0.94878 0.85414 0.79215 0.78848 0.77667 1.18361 1.20645 1.20444 1.21756 0.93658 0.92311 1.50078 0.91889 1.19013 0.94492 0.93293 0.94620 1.21437 0.97959 0.92625 1.01277 1.22226 0.98317 0.94402 1.02428 1.21367 0.95152 0.90139 0.96427 0.86330 1.58701 1.28144 1.46357 1.03253 1.20750 0.78203 0.87105 0.82670 1.90650 1.58055 1.57776 1.38226 1.45773 1.57588 1.23856 1.09913 1.21305 0.98345 0.86941 0.92293 1.23412 0.86672 0.99776 0.91385 0.88579 1.23753 1.04011 0.96071 0.80820 1.86303 1.34863 1.85683 1.16348 1.19237 0.89832 1.00499 0.92291 1.20782 1.01632 1.01481 0.90441 1.21324 0.92726 0.98815 1.00346 1.21318 0.99094 0.97598 0.95251 1.20778 0.98956 1.02542 0.92296 1.19197 0.96912 0.99048 0.86196 1.86307 1.33776 1.80383 1.22555 0.92855 0.99597 0.98999 0.91904 0.92557 0.93082 0.91069 0.84061 0.82753 0.74966 0.87861 0.90620 0.82955 0.89643 0.83656 0.82211 0.82448 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 3 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.54 4.92 30.59 0.15 -3.39 16 11 C -0.13 -4.11 4.84 30.59 0.15 -3.96 16 12 C 0.08 2.20 3.21 44.17 0.14 2.34 16 13 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 14 N -0.83 -22.41 8.94 -171.79 -1.54 -23.94 16 15 C 0.53 14.27 7.08 87.66 0.62 14.89 16 16 O -0.57 -19.19 16.25 -3.04 -0.05 -19.24 16 17 N -0.72 -14.88 5.46 -463.07 -2.53 -17.41 16 18 C 0.13 2.31 5.39 86.38 0.47 2.78 16 19 C 0.04 0.70 3.10 30.75 0.10 0.79 16 20 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 21 C 0.03 0.39 6.56 72.14 0.47 0.86 16 22 O -0.32 -5.94 10.42 -82.55 -0.86 -6.80 16 23 C 0.03 0.51 6.49 22.56 0.15 0.65 16 24 C -0.12 -1.93 9.96 22.37 0.22 -1.71 16 25 C -0.11 -1.35 10.04 22.26 0.22 -1.13 16 26 C -0.11 -1.44 10.04 22.26 0.22 -1.22 16 27 C -0.13 -2.15 9.96 22.37 0.22 -1.93 16 28 C 0.03 0.63 6.49 22.56 0.15 0.77 16 29 O -0.31 -6.32 9.88 -82.48 -0.81 -7.13 16 30 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 31 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 32 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.06 2.00 6.87 -2.38 -0.02 1.99 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.35 9.80 8.58 -89.70 -0.77 9.03 16 38 H 0.36 8.88 7.55 -89.69 -0.68 8.20 16 39 H 0.41 7.40 8.39 -92.71 -0.78 6.63 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.15 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 46 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 47 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -73.84 391.95 -0.58 -74.41 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -1.22 Total: 29.11 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 4.12 Total: -18.43 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -3.78 Total: -97.68 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.72 Total: -33.17 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -73.84 -0.58 -74.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594427112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.693 kcal (2) G-P(sol) polarization free energy of solvation -73.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds