Wall clock time and date at job start Wed Apr 1 2020 00:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31400 * 1 3 3 Si 1.86804 * 120.00294 * 2 1 4 4 H 1.48500 * 109.47008 * 269.99911 * 3 2 1 5 5 H 1.48497 * 109.47033 * 30.00166 * 3 2 1 6 6 H 1.48501 * 109.46976 * 150.00133 * 3 2 1 7 7 C 1.38954 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99593 * 0.02562 * 7 2 1 9 9 N 1.37094 * 120.00421 * 180.02562 * 7 2 1 10 10 C 1.34779 * 119.99919 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99953 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99846 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47062 * 173.30856 * 12 10 9 14 14 C 1.46901 * 111.00010 * 150.64442 * 13 12 10 15 15 C 1.50700 * 109.46904 * 207.22400 * 14 13 12 16 16 C 1.38233 * 119.99981 * 228.13932 * 15 14 13 17 17 C 1.38233 * 119.99935 * 179.76922 * 16 15 14 18 18 C 1.38230 * 120.00128 * 0.50336 * 17 16 15 19 19 C 1.38238 * 120.00008 * 359.75140 * 18 17 16 20 20 C 1.38234 * 119.99905 * 48.41428 * 15 14 13 21 21 C 1.46904 * 111.00015 * 274.59554 * 13 12 10 22 22 C 1.53001 * 110.45675 * 50.19579 * 21 13 12 23 23 O 1.42902 * 109.46912 * 178.58244 * 22 21 13 24 24 C 1.54500 * 110.51208 * 172.80394 * 21 13 12 25 25 C 1.54480 * 104.06541 * 118.78184 * 24 21 13 26 26 O 1.44419 * 104.89804 * 335.96311 * 25 24 21 27 27 C 1.44693 * 105.13991 * 40.49869 * 26 25 24 28 28 H 0.97003 * 119.99999 * 0.02562 * 1 2 3 29 29 H 0.96994 * 119.99878 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.46585 * 53.30626 * 12 10 9 31 31 H 1.08998 * 109.46889 * 293.30989 * 12 10 9 32 32 H 1.09002 * 109.46581 * 327.21983 * 14 13 12 33 33 H 1.08994 * 109.47025 * 87.21994 * 14 13 12 34 34 H 1.08006 * 119.99884 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.99683 * 180.23285 * 17 16 15 36 36 H 1.07996 * 120.00235 * 179.72691 * 18 17 16 37 37 H 1.08001 * 120.00000 * 179.97438 * 19 18 17 38 38 H 1.07996 * 120.00374 * 0.02562 * 20 15 14 39 39 H 1.09001 * 109.47318 * 298.58156 * 22 21 13 40 40 H 1.08992 * 109.47307 * 58.58256 * 22 21 13 41 41 H 0.96705 * 113.99501 * 179.97438 * 23 22 21 42 42 H 1.08996 * 110.51355 * 0.13572 * 24 21 13 43 43 H 1.09005 * 110.62618 * 237.48358 * 24 21 13 44 44 H 1.09003 * 110.37140 * 94.85003 * 25 24 21 45 45 H 1.09006 * 110.37188 * 217.07773 * 25 24 21 46 46 H 1.08992 * 110.35499 * 200.67099 * 27 26 25 47 47 H 1.09005 * 110.44918 * 78.40563 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0014 9 7 3.3797 -1.2034 0.0000 10 6 4.0536 -2.3707 -0.0011 11 8 3.4470 -3.4211 -0.0020 12 6 5.5606 -2.3708 -0.0011 13 7 6.0502 -3.7464 0.1591 14 6 7.3526 -3.9215 -0.4974 15 6 7.5186 -5.3619 -0.9080 16 6 8.6881 -6.0355 -0.6091 17 6 8.8384 -7.3582 -0.9815 18 6 7.8234 -8.0043 -1.6621 19 6 6.6560 -7.3291 -1.9657 20 6 6.5035 -6.0079 -1.5887 21 6 6.1221 -4.1178 1.5786 22 6 4.8029 -3.7950 2.2832 23 8 4.8843 -4.1944 3.6529 24 6 6.4638 -5.6170 1.7294 25 6 7.8050 -5.6211 2.4959 26 8 8.3960 -4.3332 2.2169 27 6 7.2973 -3.3933 2.2718 28 1 -0.4850 0.8401 -0.0004 29 1 3.8647 -0.3635 0.0004 30 1 5.9239 -1.7574 0.8236 31 1 5.9239 -1.9633 -0.9445 32 1 7.4031 -3.2839 -1.3801 33 1 8.1483 -3.6471 0.1951 34 1 9.4831 -5.5293 -0.0815 35 1 9.7507 -7.8856 -0.7446 36 1 7.9426 -9.0363 -1.9569 37 1 5.8631 -7.8338 -2.4978 38 1 5.5918 -5.4803 -1.8265 39 1 4.6142 -2.7229 2.2280 40 1 3.9896 -4.3326 1.7958 41 1 4.0811 -4.0190 4.1621 42 1 6.5817 -6.0821 0.7508 43 1 5.6934 -6.1304 2.3049 44 1 7.6302 -5.7347 3.5658 45 1 8.4486 -6.4212 2.1301 46 1 7.5517 -2.4809 1.7326 47 1 7.0440 -3.1636 3.3068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599395987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:47 Heat of formation + Delta-G solvation = -67.204142 kcal Electronic energy + Delta-G solvation = -30950.636614 eV Core-core repulsion = 26906.694600 eV Total energy + Delta-G solvation = -4043.942013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.90698 -38.86109 -38.31442 -36.36725 -35.84092 -33.96227 -31.98591 -31.74738 -31.20505 -30.73513 -28.79077 -27.71130 -25.51012 -24.75694 -23.80938 -22.48092 -22.34694 -21.07062 -19.60242 -19.00952 -18.24146 -17.64690 -16.76629 -16.44078 -15.99712 -15.74198 -15.34330 -15.32803 -14.88913 -14.73944 -14.59038 -14.36809 -13.97222 -13.53904 -13.26563 -13.23953 -13.19333 -12.94441 -12.65731 -12.61355 -12.39603 -12.14932 -11.79807 -11.64372 -11.43927 -11.26911 -11.10208 -11.03425 -10.90185 -10.80478 -10.64173 -10.39765 -10.02941 -9.85167 -9.74142 -9.50122 -8.78010 -8.60047 -8.44038 -8.20304 -7.97730 -6.35877 -3.87279 1.44350 1.54326 2.97774 3.02737 3.11535 3.54953 3.66699 3.94788 4.00961 4.05719 4.42529 4.63800 4.78375 4.92496 4.94085 5.00575 5.09795 5.16246 5.24742 5.26607 5.30950 5.39825 5.44516 5.48801 5.54946 5.60957 5.64601 5.68931 5.71766 5.78314 5.84743 5.88100 5.95667 6.10167 6.15672 6.22274 6.32434 6.40675 6.56038 6.66211 6.74619 6.76821 7.08548 7.14978 7.21623 7.53731 7.83115 8.09085 8.55755 8.90847 9.37664 9.78993 10.77129 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015531 B = 0.003791 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.432374 B = 7383.537987 C = 8088.088716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.878 3.122 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.593 5.593 10 C 0.452 3.548 11 O -0.552 6.552 12 C 0.032 3.968 13 N -0.492 5.492 14 C 0.080 3.920 15 C -0.064 4.064 16 C -0.115 4.115 17 C -0.129 4.129 18 C -0.128 4.128 19 C -0.126 4.126 20 C -0.089 4.089 21 C 0.098 3.902 22 C 0.084 3.916 23 O -0.581 6.581 24 C -0.146 4.146 25 C 0.051 3.949 26 O -0.375 6.375 27 C 0.019 3.981 28 H 0.273 0.727 29 H 0.369 0.631 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.133 0.867 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.382 0.618 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.614 -8.672 1.580 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.704 3.296 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.233 5.233 10 C 0.237 3.763 11 O -0.433 6.433 12 C -0.100 4.100 13 N -0.216 5.216 14 C -0.047 4.047 15 C -0.065 4.065 16 C -0.133 4.133 17 C -0.147 4.147 18 C -0.146 4.146 19 C -0.144 4.144 20 C -0.107 4.107 21 C 0.008 3.992 22 C 0.006 3.994 23 O -0.387 6.387 24 C -0.183 4.183 25 C -0.026 4.026 26 O -0.294 6.294 27 C -0.059 4.059 28 H 0.084 0.916 29 H 0.202 0.798 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.151 0.849 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.229 0.771 42 H 0.118 0.882 43 H 0.098 0.902 44 H 0.074 0.926 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.461 -9.706 1.120 20.009 hybrid contribution 0.252 2.205 0.577 2.293 sum 17.713 -7.502 1.697 19.311 Atomic orbital electron populations 1.69612 1.05638 1.27505 1.49317 1.25023 0.95450 0.97919 0.97671 0.86708 0.79746 0.84203 0.78931 1.19604 1.20208 1.19584 1.19398 0.79160 0.96546 1.48164 0.86260 1.42244 1.07524 1.06126 1.67418 1.19600 0.87958 0.84569 0.84132 1.90530 1.69167 1.30675 1.52910 1.22134 0.96218 0.89493 1.02123 1.61536 1.25609 1.22954 1.11452 1.21305 0.90803 0.93804 0.98826 1.19702 0.93848 0.95587 0.97356 1.21044 0.97537 0.94541 1.00198 1.21023 0.98940 0.94945 0.99816 1.21086 0.94215 0.99625 0.99666 1.21185 0.97555 0.95056 1.00615 1.21185 0.98927 0.94376 0.96244 1.22233 0.94128 0.95791 0.87048 1.22418 0.96840 0.99016 0.81093 1.86264 1.42860 1.86817 1.22727 1.23182 0.97139 0.95171 1.02835 1.23338 0.94156 0.86088 0.98973 1.89081 1.30811 1.17335 1.92132 1.24103 0.87210 0.93256 1.01368 0.91602 0.79841 0.92753 0.89019 0.89922 0.91100 0.86181 0.86648 0.86733 0.86385 0.84947 0.93638 0.89289 0.77083 0.88240 0.90167 0.92555 0.89677 0.89828 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.04 13.96 55.50 0.77 -24.27 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 18.79 27.74 -169.99 -4.71 14.08 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 7 C -0.30 -8.18 10.16 -14.93 -0.15 -8.33 16 8 H 0.12 3.68 7.39 -52.48 -0.39 3.29 16 9 N -0.59 -13.26 5.09 -10.96 -0.06 -13.32 16 10 C 0.45 9.43 5.79 -10.98 -0.06 9.36 16 11 O -0.55 -13.44 13.46 5.55 0.07 -13.37 16 12 C 0.03 0.49 4.87 -4.98 -0.02 0.47 16 13 N -0.49 -7.39 3.40 -220.02 -0.75 -8.13 16 14 C 0.08 1.02 4.84 -4.98 -0.02 1.00 16 15 C -0.06 -0.82 3.12 -104.62 -0.33 -1.14 16 16 C -0.11 -1.31 8.11 -39.59 -0.32 -1.63 16 17 C -0.13 -1.36 10.05 -39.59 -0.40 -1.75 16 18 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 19 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 20 C -0.09 -1.21 8.45 -39.58 -0.33 -1.54 16 21 C 0.10 1.46 0.59 -130.03 -0.08 1.38 16 22 C 0.08 1.39 4.43 37.16 0.16 1.56 16 23 O -0.58 -8.43 12.07 -35.23 -0.43 -8.86 16 24 C -0.15 -2.07 5.47 -25.17 -0.14 -2.20 16 25 C 0.05 0.65 6.98 37.93 0.26 0.91 16 26 O -0.37 -5.10 10.16 -35.23 -0.36 -5.46 16 27 C 0.02 0.26 5.44 37.94 0.21 0.47 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.37 7.33 5.76 -40.82 -0.24 7.10 16 30 H 0.05 0.76 6.19 -51.93 -0.32 0.44 16 31 H 0.09 1.24 7.32 -51.93 -0.38 0.86 16 32 H 0.08 0.97 7.34 -51.93 -0.38 0.59 16 33 H 0.07 0.89 4.69 -51.93 -0.24 0.65 16 34 H 0.12 1.30 7.98 -52.48 -0.42 0.88 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.11 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.13 2.04 7.97 -52.49 -0.42 1.62 16 39 H 0.05 0.81 5.93 -51.93 -0.31 0.50 16 40 H 0.09 1.77 6.23 -51.93 -0.32 1.44 16 41 H 0.38 4.27 9.12 45.56 0.42 4.69 16 42 H 0.10 1.45 3.80 -51.93 -0.20 1.25 16 43 H 0.08 1.20 7.39 -51.93 -0.38 0.82 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.96 7.70 -51.93 -0.40 0.56 16 46 H 0.08 1.06 6.25 -51.93 -0.32 0.74 16 47 H 0.07 1.03 7.22 -51.93 -0.37 0.66 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -30.93 359.40 -7.69 -38.62 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -5.54 Total: 19.38 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -2.11 Total: -4.11 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.03 Total: -45.72 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.71 Total: -27.68 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.71 Total: 14.08 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.93 -7.69 -38.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599395987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.581 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds