Wall clock time and date at job start Wed Apr 1 2020 00:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31400 * 1 3 3 Si 1.86804 * 120.00294 * 2 1 4 4 H 1.48500 * 109.47008 * 269.99911 * 3 2 1 5 5 H 1.48497 * 109.47033 * 30.00166 * 3 2 1 6 6 H 1.48501 * 109.46976 * 150.00133 * 3 2 1 7 7 C 1.38954 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99593 * 0.02562 * 7 2 1 9 9 N 1.37094 * 120.00421 * 180.02562 * 7 2 1 10 10 C 1.34779 * 119.99919 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99953 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99846 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47062 * 173.30856 * 12 10 9 14 14 C 1.46901 * 111.00010 * 150.64442 * 13 12 10 15 15 C 1.50700 * 109.46904 * 207.22400 * 14 13 12 16 16 C 1.38233 * 119.99981 * 228.13932 * 15 14 13 17 17 C 1.38233 * 119.99935 * 179.76922 * 16 15 14 18 18 C 1.38230 * 120.00128 * 0.50336 * 17 16 15 19 19 C 1.38238 * 120.00008 * 359.75140 * 18 17 16 20 20 C 1.38234 * 119.99905 * 48.41428 * 15 14 13 21 21 C 1.46904 * 111.00015 * 274.59554 * 13 12 10 22 22 C 1.53001 * 110.45675 * 50.19579 * 21 13 12 23 23 O 1.42902 * 109.46912 * 178.58244 * 22 21 13 24 24 C 1.54500 * 110.51208 * 172.80394 * 21 13 12 25 25 C 1.54480 * 104.06541 * 118.78184 * 24 21 13 26 26 O 1.44419 * 104.89804 * 335.96311 * 25 24 21 27 27 C 1.44693 * 105.13991 * 40.49869 * 26 25 24 28 28 H 0.97003 * 119.99999 * 0.02562 * 1 2 3 29 29 H 0.96994 * 119.99878 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.46585 * 53.30626 * 12 10 9 31 31 H 1.08998 * 109.46889 * 293.30989 * 12 10 9 32 32 H 1.09002 * 109.46581 * 327.21983 * 14 13 12 33 33 H 1.08994 * 109.47025 * 87.21994 * 14 13 12 34 34 H 1.08006 * 119.99884 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.99683 * 180.23285 * 17 16 15 36 36 H 1.07996 * 120.00235 * 179.72691 * 18 17 16 37 37 H 1.08001 * 120.00000 * 179.97438 * 19 18 17 38 38 H 1.07996 * 120.00374 * 0.02562 * 20 15 14 39 39 H 1.09001 * 109.47318 * 298.58156 * 22 21 13 40 40 H 1.08992 * 109.47307 * 58.58256 * 22 21 13 41 41 H 0.96705 * 113.99501 * 179.97438 * 23 22 21 42 42 H 1.08996 * 110.51355 * 0.13572 * 24 21 13 43 43 H 1.09005 * 110.62618 * 237.48358 * 24 21 13 44 44 H 1.09003 * 110.37140 * 94.85003 * 25 24 21 45 45 H 1.09006 * 110.37188 * 217.07773 * 25 24 21 46 46 H 1.08992 * 110.35499 * 200.67099 * 27 26 25 47 47 H 1.09005 * 110.44918 * 78.40563 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0014 9 7 3.3797 -1.2034 0.0000 10 6 4.0536 -2.3707 -0.0011 11 8 3.4470 -3.4211 -0.0020 12 6 5.5606 -2.3708 -0.0011 13 7 6.0502 -3.7464 0.1591 14 6 7.3526 -3.9215 -0.4974 15 6 7.5186 -5.3619 -0.9080 16 6 8.6881 -6.0355 -0.6091 17 6 8.8384 -7.3582 -0.9815 18 6 7.8234 -8.0043 -1.6621 19 6 6.6560 -7.3291 -1.9657 20 6 6.5035 -6.0079 -1.5887 21 6 6.1221 -4.1178 1.5786 22 6 4.8029 -3.7950 2.2832 23 8 4.8843 -4.1944 3.6529 24 6 6.4638 -5.6170 1.7294 25 6 7.8050 -5.6211 2.4959 26 8 8.3960 -4.3332 2.2169 27 6 7.2973 -3.3933 2.2718 28 1 -0.4850 0.8401 -0.0004 29 1 3.8647 -0.3635 0.0004 30 1 5.9239 -1.7574 0.8236 31 1 5.9239 -1.9633 -0.9445 32 1 7.4031 -3.2839 -1.3801 33 1 8.1483 -3.6471 0.1951 34 1 9.4831 -5.5293 -0.0815 35 1 9.7507 -7.8856 -0.7446 36 1 7.9426 -9.0363 -1.9569 37 1 5.8631 -7.8338 -2.4978 38 1 5.5918 -5.4803 -1.8265 39 1 4.6142 -2.7229 2.2280 40 1 3.9896 -4.3326 1.7958 41 1 4.0811 -4.0190 4.1621 42 1 6.5817 -6.0821 0.7508 43 1 5.6934 -6.1304 2.3049 44 1 7.6302 -5.7347 3.5658 45 1 8.4486 -6.4212 2.1301 46 1 7.5517 -2.4809 1.7326 47 1 7.0440 -3.1636 3.3068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599395987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:37 Heat of formation + Delta-G solvation = -91.462720 kcal Electronic energy + Delta-G solvation = -30951.688544 eV Core-core repulsion = 26906.694600 eV Total energy + Delta-G solvation = -4044.993944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 9.53 seconds Orbital eigenvalues (eV) -42.04872 -40.11189 -39.64680 -37.59683 -37.04581 -35.86037 -33.71670 -32.97729 -32.37560 -31.62994 -29.93621 -29.00728 -26.90303 -26.13400 -25.15340 -23.57020 -23.28566 -22.03383 -21.28998 -20.54051 -19.80361 -18.89265 -17.95823 -17.50502 -17.26633 -17.06078 -16.80476 -16.40107 -16.23366 -15.99087 -15.62743 -15.57475 -15.32015 -15.11478 -14.65518 -14.44178 -14.35034 -14.13813 -13.98290 -13.85560 -13.73304 -13.51439 -13.06745 -12.82902 -12.66367 -12.53369 -12.40326 -12.20102 -12.16578 -11.98466 -11.83970 -11.73083 -11.65652 -11.38623 -11.02187 -10.88552 -10.29681 -10.15481 -9.68011 -9.37748 -9.15348 -8.38656 -5.98046 0.55108 0.63905 1.30082 1.35522 1.43729 1.99579 2.23670 2.38090 2.89072 3.03664 3.11551 3.17398 3.31616 3.62959 3.83474 3.96050 4.07086 4.12635 4.15757 4.22604 4.26942 4.29318 4.34380 4.36044 4.44240 4.47494 4.53411 4.58717 4.65692 4.74568 4.79360 4.83530 4.88665 4.92531 5.08762 5.20975 5.24705 5.31190 5.54201 5.65615 5.70967 5.76391 5.79423 5.94831 6.04752 6.13769 6.25253 6.63245 6.71378 6.93323 7.44642 8.02583 8.78914 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015531 B = 0.003791 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.432374 B = 7383.537987 C = 8088.088716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.014 4.014 3 Si 0.959 3.041 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.232 1.232 7 C -0.319 4.319 8 H 0.057 0.943 9 N -0.596 5.596 10 C 0.456 3.544 11 O -0.592 6.592 12 C 0.040 3.960 13 N -0.510 5.510 14 C 0.083 3.917 15 C -0.071 4.071 16 C -0.114 4.114 17 C -0.125 4.125 18 C -0.128 4.128 19 C -0.138 4.138 20 C -0.110 4.110 21 C 0.098 3.902 22 C 0.096 3.904 23 O -0.578 6.578 24 C -0.145 4.145 25 C 0.058 3.942 26 O -0.373 6.373 27 C 0.026 3.974 28 H 0.277 0.723 29 H 0.387 0.613 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.033 0.967 40 H 0.046 0.954 41 H 0.395 0.605 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.103 -7.771 1.874 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.213 4.213 3 Si 0.780 3.220 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.155 1.155 7 C -0.448 4.448 8 H 0.075 0.925 9 N -0.239 5.239 10 C 0.244 3.756 11 O -0.475 6.475 12 C -0.091 4.091 13 N -0.234 5.234 14 C -0.043 4.043 15 C -0.072 4.072 16 C -0.133 4.133 17 C -0.143 4.143 18 C -0.146 4.146 19 C -0.156 4.156 20 C -0.129 4.129 21 C 0.008 3.992 22 C 0.017 3.983 23 O -0.385 6.385 24 C -0.182 4.182 25 C -0.019 4.019 26 O -0.292 6.292 27 C -0.053 4.053 28 H 0.087 0.913 29 H 0.222 0.778 30 H 0.099 0.901 31 H 0.141 0.859 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.150 0.850 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.140 0.860 38 H 0.120 0.880 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.244 0.756 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 21.983 -8.826 1.423 23.731 hybrid contribution -1.214 1.686 0.494 2.135 sum 20.768 -7.141 1.917 22.045 Atomic orbital electron populations 1.69797 1.08086 1.29014 1.50870 1.26021 0.96343 1.02458 0.96457 0.85447 0.79537 0.77256 0.79807 1.18387 1.20363 1.15497 1.18949 0.81384 0.94743 1.49708 0.92468 1.42059 1.05759 1.07516 1.68559 1.20719 0.90437 0.83354 0.81121 1.90534 1.70923 1.32308 1.53690 1.22061 0.91468 0.90690 1.04834 1.61406 1.27477 1.22683 1.11799 1.21363 0.89491 0.94270 0.99216 1.19722 0.94203 0.95709 0.97577 1.21183 0.97105 0.94957 1.00013 1.21372 0.99674 0.94672 0.98561 1.21369 0.93478 1.00673 0.99052 1.21334 0.98613 0.94700 1.00916 1.21030 0.98482 0.95239 0.98114 1.22198 0.93472 0.96517 0.87006 1.22113 0.96899 0.97397 0.81864 1.86247 1.43814 1.86695 1.21780 1.23141 0.97759 0.94621 1.02706 1.23345 0.93344 0.86340 0.98844 1.89080 1.30551 1.17483 1.92107 1.24027 0.86505 0.93651 1.01071 0.91344 0.77836 0.90060 0.85920 0.88678 0.90087 0.84957 0.83886 0.84399 0.86008 0.87966 0.94913 0.93547 0.75597 0.88557 0.91831 0.92390 0.87806 0.88163 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.67 13.96 21.66 0.30 -55.37 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 3 Si 0.96 38.06 27.74 68.60 1.90 39.96 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 5 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.23 -7.67 6.52 99.48 0.65 -7.03 16 7 C -0.32 -17.99 10.16 84.04 0.85 -17.13 16 8 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 9 N -0.60 -26.78 5.09 -306.97 -1.56 -28.34 16 10 C 0.46 19.31 5.79 87.66 0.51 19.82 16 11 O -0.59 -30.59 13.46 -3.06 -0.04 -30.63 16 12 C 0.04 1.19 4.87 85.56 0.42 1.60 16 13 N -0.51 -14.77 3.40 -850.02 -2.89 -17.66 16 14 C 0.08 1.93 4.84 85.56 0.41 2.34 16 15 C -0.07 -1.70 3.12 -19.87 -0.06 -1.77 16 16 C -0.11 -2.27 8.11 22.27 0.18 -2.08 16 17 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 18 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 19 C -0.14 -3.25 10.05 22.27 0.22 -3.02 16 20 C -0.11 -3.01 8.45 22.27 0.19 -2.82 16 21 C 0.10 2.82 0.59 4.54 0.00 2.83 16 22 C 0.10 3.24 4.43 71.98 0.32 3.56 16 23 O -0.58 -16.79 12.07 -148.98 -1.80 -18.59 16 24 C -0.14 -3.99 5.47 31.61 0.17 -3.82 16 25 C 0.06 1.32 6.98 72.49 0.51 1.82 16 26 O -0.37 -8.89 10.16 -148.98 -1.51 -10.40 16 27 C 0.03 0.64 5.44 72.49 0.39 1.03 16 28 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 29 H 0.39 14.50 5.76 -92.71 -0.53 13.96 16 30 H 0.08 2.00 6.19 -2.38 -0.01 1.98 16 31 H 0.12 2.89 7.32 -2.39 -0.02 2.88 16 32 H 0.10 1.95 7.34 -2.39 -0.02 1.94 16 33 H 0.08 1.73 4.69 -2.39 -0.01 1.72 16 34 H 0.13 2.32 7.98 -2.91 -0.02 2.30 16 35 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.12 2.64 8.06 -2.91 -0.02 2.62 16 38 H 0.10 3.36 7.97 -2.91 -0.02 3.33 16 39 H 0.03 1.17 5.93 -2.39 -0.01 1.16 16 40 H 0.05 1.97 6.23 -2.39 -0.01 1.96 16 41 H 0.39 8.96 9.12 -74.05 -0.68 8.29 16 42 H 0.10 2.75 3.80 -2.39 -0.01 2.74 16 43 H 0.06 1.94 7.39 -2.38 -0.02 1.92 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.10 1.99 7.70 -2.38 -0.02 1.97 16 46 H 0.10 2.14 6.25 -2.39 -0.01 2.12 16 47 H 0.07 1.76 7.22 -2.38 -0.02 1.74 16 Total: -1.00 -73.14 359.40 -0.81 -73.94 By element: Atomic # 1 Polarization: 49.48 SS G_CDS: -0.24 Total: 49.24 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 5.03 Total: -2.16 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -4.15 Total: -101.37 kcal Atomic # 8 Polarization: -56.26 SS G_CDS: -3.35 Total: -59.62 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 1.90 Total: 39.96 kcal Total: -73.14 -0.81 -73.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599395987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.518 kcal (2) G-P(sol) polarization free energy of solvation -73.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.53 seconds