Wall clock time and date at job start Tue Mar 31 2020 23:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86799 * 120.00367 * 2 1 4 4 H 1.48494 * 109.47310 * 240.00358 * 3 2 1 5 5 H 1.48503 * 109.46969 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47311 * 120.00153 * 3 2 1 7 7 C 1.39895 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00353 * 189.92610 * 7 2 1 9 9 C 1.41212 * 119.99869 * 9.92131 * 7 2 1 10 10 C 1.40834 * 120.17887 * 29.25993 * 9 7 2 11 11 C 1.36437 * 119.81406 * 180.02562 * 10 9 7 12 12 C 1.39315 * 120.18326 * 359.97438 * 11 10 9 13 13 O 1.35675 * 119.81856 * 180.02562 * 12 11 10 14 14 C 1.42899 * 117.00171 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47425 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.46928 * 305.00268 * 15 14 13 17 17 O 1.42899 * 109.47116 * 65.00063 * 15 14 13 18 18 C 1.52998 * 109.47307 * 185.00145 * 15 14 13 19 19 N 1.46901 * 109.46964 * 175.30278 * 18 15 14 20 20 C 1.47904 * 110.99903 * 294.39847 * 19 18 15 21 21 C 1.53998 * 107.05757 * 214.15558 * 20 19 18 22 22 C 1.54598 * 105.14054 * 1.22936 * 21 20 19 23 23 C 1.48532 * 110.99903 * 177.00780 * 19 18 15 24 24 H 1.08996 * 110.67028 * 41.28225 * 23 19 18 25 25 C 1.50707 * 110.66482 * 278.15603 * 23 19 18 26 26 N 1.34773 * 120.00320 * 180.02562 * 25 23 19 27 27 O 1.21285 * 119.99746 * 359.97438 * 25 23 19 28 28 C 1.39319 * 120.36471 * 0.02998 * 12 11 10 29 29 C 1.36433 * 120.18276 * 359.97438 * 28 12 11 30 30 H 0.97001 * 120.00308 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.09501 * 0.27034 * 10 9 7 32 32 H 1.08005 * 119.91043 * 179.97438 * 11 10 9 33 33 H 1.08997 * 109.47439 * 300.00938 * 14 13 12 34 34 H 1.09005 * 109.46980 * 60.00495 * 14 13 12 35 35 H 0.96704 * 113.99562 * 60.00113 * 17 15 14 36 36 H 1.08994 * 109.47085 * 295.30207 * 18 15 14 37 37 H 1.09003 * 109.46916 * 55.30400 * 18 15 14 38 38 H 1.08998 * 109.92150 * 333.50989 * 20 19 18 39 39 H 1.09000 * 109.91867 * 94.80450 * 20 19 18 40 40 H 1.09004 * 110.30818 * 120.14283 * 21 20 19 41 41 H 1.08998 * 110.31025 * 242.31009 * 21 20 19 42 42 H 1.08996 * 110.72660 * 140.31067 * 22 21 20 43 43 H 1.09000 * 110.72005 * 263.60221 * 22 21 20 44 44 H 0.97006 * 119.99569 * 359.97438 * 26 25 23 45 45 H 0.97002 * 120.00413 * 179.97438 * 26 25 23 46 46 H 1.08001 * 119.90670 * 179.97438 * 28 12 11 47 47 H 1.08000 * 120.09314 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0966 1.6963 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0761 -1.2186 0.1607 9 6 1.3181 -2.4252 -0.2118 10 6 0.1478 -2.4471 -0.9951 11 6 -0.5134 -3.6238 -1.1939 12 6 -0.0338 -4.8016 -0.6250 13 8 -0.6970 -5.9677 -0.8280 14 6 -0.1525 -7.1387 -0.2162 15 6 -1.0291 -8.3459 -0.5552 16 1 -2.0588 -8.1410 -0.2619 17 8 -0.9748 -8.5941 -1.9614 18 6 -0.5187 -9.5749 0.1997 19 7 -1.4254 -10.7063 -0.0369 20 6 -2.7582 -10.4493 0.5506 21 6 -3.3031 -11.8027 1.0435 22 6 -2.1882 -12.8261 0.7278 23 6 -0.9227 -11.9383 0.6231 24 1 -0.5292 -11.7109 1.6138 25 6 0.1270 -12.6066 -0.2271 26 7 0.7116 -13.7452 0.1951 27 8 0.4450 -12.1203 -1.2917 28 6 1.1230 -4.7886 0.1512 29 6 1.7960 -3.6203 0.3598 30 1 -0.4851 0.8400 0.0004 31 1 -0.2229 -1.5357 -1.4404 32 1 -1.4112 -3.6423 -1.7940 33 1 0.8577 -7.3074 -0.5893 34 1 -0.1225 -7.0032 0.8650 35 1 -0.0866 -8.7843 -2.2932 36 1 0.4802 -9.8297 -0.1541 37 1 -0.4815 -9.3562 1.2669 38 1 -2.6677 -9.7581 1.3885 39 1 -3.4239 -10.0344 -0.2062 40 1 -3.4909 -11.7668 2.1166 41 1 -4.2164 -12.0607 0.5073 42 1 -2.0867 -13.5482 1.5380 43 1 -2.3845 -13.3309 -0.2181 44 1 0.4569 -14.1343 1.0465 45 1 1.3869 -14.1756 -0.3522 46 1 1.4880 -5.7059 0.5891 47 1 2.6924 -3.6118 0.9621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599601768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:06 Heat of formation + Delta-G solvation = -100.045505 kcal Electronic energy + Delta-G solvation = -28193.839363 eV Core-core repulsion = 24148.473241 eV Total energy + Delta-G solvation = -4045.366122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 11.03 seconds Orbital eigenvalues (eV) -40.50068 -39.01450 -38.26209 -37.02200 -35.88867 -34.03384 -33.24060 -32.60534 -30.22233 -29.75180 -29.26753 -28.78659 -25.65926 -24.52540 -23.32653 -22.33972 -21.03735 -20.59425 -20.41972 -20.26074 -17.88637 -17.43280 -17.30483 -17.03259 -16.41884 -16.20053 -15.62403 -15.27420 -15.18823 -14.89431 -14.59650 -14.29345 -13.98352 -13.88695 -13.59057 -13.27481 -13.16503 -12.89674 -12.45074 -12.16714 -12.12174 -12.09574 -11.80476 -11.67009 -11.55014 -11.32807 -11.11235 -11.05101 -10.93002 -10.71669 -10.60596 -10.11576 -10.00070 -9.90855 -9.79777 -9.77411 -9.27565 -9.05426 -8.66750 -7.61719 -6.93222 -6.63170 -4.24827 2.35642 2.82166 2.94224 2.97359 3.10644 3.13586 3.23632 3.54400 3.99371 4.03181 4.17757 4.25302 4.47621 4.61671 4.65638 4.69871 4.77401 4.97144 5.00644 5.09248 5.20888 5.24854 5.31438 5.35552 5.48772 5.53671 5.62968 5.65179 5.69016 5.81154 6.08090 6.08473 6.24979 6.38179 6.50666 6.65415 6.76428 7.00045 7.00340 7.14463 7.23074 7.49692 7.59557 7.80847 7.90789 7.99564 8.04290 8.24649 8.48569 8.68893 8.94665 9.01742 10.31664 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028007 B = 0.001937 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.515425 B =14455.534414 C =14844.277804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.071 3.929 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.465 4.465 8 H 0.074 0.926 9 C 0.085 3.915 10 C -0.124 4.124 11 C -0.123 4.123 12 C -0.001 4.001 13 O -0.316 6.316 14 C 0.038 3.962 15 C 0.120 3.880 16 H 0.103 0.897 17 O -0.537 6.537 18 C 0.019 3.981 19 N -0.479 5.479 20 C 0.031 3.969 21 C -0.129 4.129 22 C -0.110 4.110 23 C 0.040 3.960 24 H 0.078 0.922 25 C 0.524 3.476 26 N -0.860 5.860 27 O -0.514 6.514 28 C -0.173 4.173 29 C -0.193 4.193 30 H 0.279 0.721 31 H 0.128 0.872 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.373 0.627 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.399 0.601 45 H 0.402 0.598 46 H 0.092 0.908 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 -25.492 5.537 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.496 4.496 8 H 0.092 0.908 9 C 0.083 3.917 10 C -0.143 4.143 11 C -0.142 4.142 12 C -0.044 4.044 13 O -0.232 6.232 14 C -0.039 4.039 15 C 0.060 3.940 16 H 0.120 0.880 17 O -0.342 6.342 18 C -0.110 4.110 19 N -0.203 5.203 20 C -0.096 4.096 21 C -0.167 4.167 22 C -0.149 4.149 23 C -0.072 4.072 24 H 0.096 0.904 25 C 0.307 3.693 26 N -0.425 5.425 27 O -0.387 6.387 28 C -0.192 4.192 29 C -0.213 4.213 30 H 0.090 0.910 31 H 0.146 0.854 32 H 0.117 0.883 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.220 0.780 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.227 0.773 45 H 0.233 0.767 46 H 0.110 0.890 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.398 -24.803 4.238 25.544 hybrid contribution 1.514 0.399 1.536 2.193 sum -2.884 -24.404 5.774 25.243 Atomic orbital electron populations 1.69782 1.07300 1.28952 1.37660 1.25852 0.94854 1.01068 0.92614 0.86325 0.79920 0.80387 0.79746 1.19004 1.20441 1.19222 1.19399 0.95531 0.90414 1.44212 0.90762 1.17607 0.92233 0.92184 0.89657 1.21048 0.97679 0.95863 0.99741 1.19882 1.00701 0.90772 1.02872 1.18679 0.95470 0.84860 1.05402 1.85894 1.51625 1.13940 1.71704 1.23133 0.97151 0.86134 0.97524 1.21760 1.00333 0.89425 0.82473 0.87952 1.86607 1.34206 1.92638 1.20704 1.22952 0.97722 0.91612 0.98665 1.64392 1.01754 1.01202 1.52981 1.22988 0.91071 0.96961 0.98590 1.22402 0.98779 0.94203 1.01348 1.22437 0.92534 0.97124 1.02770 1.22750 0.95284 0.93234 0.95927 0.90444 1.20310 0.81711 0.80644 0.86612 1.43862 1.45024 1.27802 1.25798 1.90783 1.62111 1.63490 1.22359 1.20400 0.97317 0.97897 1.03583 1.20619 1.02240 0.93156 1.05236 0.91017 0.85414 0.88349 0.92851 0.92685 0.77998 0.89619 0.93654 0.93197 0.89254 0.91048 0.90359 0.90308 0.90084 0.77345 0.76723 0.88966 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.42 10.83 55.55 0.60 -20.82 16 2 C 0.07 1.83 5.26 -17.34 -0.09 1.74 16 3 Si 0.91 19.14 29.57 -169.99 -5.03 14.11 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.55 9.05 -37.83 -0.34 -12.90 16 8 H 0.07 1.92 7.86 -52.49 -0.41 1.51 16 9 C 0.09 2.32 5.55 -106.81 -0.59 1.73 16 10 C -0.12 -3.31 8.59 -39.25 -0.34 -3.65 16 11 C -0.12 -3.09 9.92 -39.83 -0.40 -3.48 16 12 C 0.00 -0.02 6.71 -38.78 -0.26 -0.28 16 13 O -0.32 -6.74 10.09 -23.58 -0.24 -6.98 16 14 C 0.04 0.62 4.36 37.16 0.16 0.78 16 15 C 0.12 1.68 3.23 -26.73 -0.09 1.59 16 16 H 0.10 1.47 7.20 -51.93 -0.37 1.09 16 17 O -0.54 -8.55 13.25 -40.08 -0.53 -9.08 16 18 C 0.02 0.22 4.20 -3.82 -0.02 0.20 16 19 N -0.48 -5.11 4.52 -223.99 -1.01 -6.13 16 20 C 0.03 0.28 5.52 -2.75 -0.02 0.27 16 21 C -0.13 -0.80 6.93 -25.37 -0.18 -0.97 16 22 C -0.11 -0.63 6.49 -24.87 -0.16 -0.80 16 23 C 0.04 0.32 2.71 -66.94 -0.18 0.14 16 24 H 0.08 0.49 8.02 -51.93 -0.42 0.07 16 25 C 0.52 4.89 7.24 -10.98 -0.08 4.81 16 26 N -0.86 -4.21 8.87 31.22 0.28 -3.93 16 27 O -0.51 -7.33 16.68 5.55 0.09 -7.24 16 28 C -0.17 -3.99 8.96 -39.83 -0.36 -4.35 16 29 C -0.19 -4.82 9.74 -39.25 -0.38 -5.21 16 30 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 31 H 0.13 3.49 6.23 -52.49 -0.33 3.17 16 32 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 33 H 0.05 0.84 7.65 -51.93 -0.40 0.44 16 34 H 0.06 0.84 7.65 -51.93 -0.40 0.45 16 35 H 0.37 5.08 9.05 45.56 0.41 5.49 16 36 H 0.09 1.02 7.42 -51.93 -0.39 0.64 16 37 H 0.05 0.44 7.94 -51.93 -0.41 0.03 16 38 H 0.05 0.42 7.64 -51.93 -0.40 0.02 16 39 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.55 8.05 -51.93 -0.42 0.14 16 44 H 0.40 0.68 8.83 -40.82 -0.36 0.32 16 45 H 0.40 1.73 8.93 -40.82 -0.36 1.37 16 46 H 0.09 1.84 6.27 -52.49 -0.33 1.51 16 47 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 385.28 15.07 5.81 5.81 Total: -1.00 -34.05 385.28 -9.59 -43.64 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -6.25 Total: 11.00 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -3.31 Total: -20.38 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: -0.13 Total: -30.87 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.68 Total: -23.30 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.05 -9.59 -43.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599601768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.401 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.03 seconds