Wall clock time and date at job start Tue Mar 31 2020 23:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86799 * 120.00367 * 2 1 4 4 H 1.48494 * 109.47310 * 240.00358 * 3 2 1 5 5 H 1.48503 * 109.46969 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47311 * 120.00153 * 3 2 1 7 7 C 1.39895 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00353 * 189.92610 * 7 2 1 9 9 C 1.41212 * 119.99869 * 9.92131 * 7 2 1 10 10 C 1.40834 * 120.17887 * 29.25993 * 9 7 2 11 11 C 1.36437 * 119.81406 * 180.02562 * 10 9 7 12 12 C 1.39315 * 120.18326 * 359.97438 * 11 10 9 13 13 O 1.35675 * 119.81856 * 180.02562 * 12 11 10 14 14 C 1.42899 * 117.00171 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47425 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.46928 * 305.00268 * 15 14 13 17 17 O 1.42899 * 109.47116 * 65.00063 * 15 14 13 18 18 C 1.52998 * 109.47307 * 185.00145 * 15 14 13 19 19 N 1.46901 * 109.46964 * 175.30278 * 18 15 14 20 20 C 1.47904 * 110.99903 * 294.39847 * 19 18 15 21 21 C 1.53998 * 107.05757 * 214.15558 * 20 19 18 22 22 C 1.54598 * 105.14054 * 1.22936 * 21 20 19 23 23 C 1.48532 * 110.99903 * 177.00780 * 19 18 15 24 24 H 1.08996 * 110.67028 * 41.28225 * 23 19 18 25 25 C 1.50707 * 110.66482 * 278.15603 * 23 19 18 26 26 N 1.34773 * 120.00320 * 180.02562 * 25 23 19 27 27 O 1.21285 * 119.99746 * 359.97438 * 25 23 19 28 28 C 1.39319 * 120.36471 * 0.02998 * 12 11 10 29 29 C 1.36433 * 120.18276 * 359.97438 * 28 12 11 30 30 H 0.97001 * 120.00308 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.09501 * 0.27034 * 10 9 7 32 32 H 1.08005 * 119.91043 * 179.97438 * 11 10 9 33 33 H 1.08997 * 109.47439 * 300.00938 * 14 13 12 34 34 H 1.09005 * 109.46980 * 60.00495 * 14 13 12 35 35 H 0.96704 * 113.99562 * 60.00113 * 17 15 14 36 36 H 1.08994 * 109.47085 * 295.30207 * 18 15 14 37 37 H 1.09003 * 109.46916 * 55.30400 * 18 15 14 38 38 H 1.08998 * 109.92150 * 333.50989 * 20 19 18 39 39 H 1.09000 * 109.91867 * 94.80450 * 20 19 18 40 40 H 1.09004 * 110.30818 * 120.14283 * 21 20 19 41 41 H 1.08998 * 110.31025 * 242.31009 * 21 20 19 42 42 H 1.08996 * 110.72660 * 140.31067 * 22 21 20 43 43 H 1.09000 * 110.72005 * 263.60221 * 22 21 20 44 44 H 0.97006 * 119.99569 * 359.97438 * 26 25 23 45 45 H 0.97002 * 120.00413 * 179.97438 * 26 25 23 46 46 H 1.08001 * 119.90670 * 179.97438 * 28 12 11 47 47 H 1.08000 * 120.09314 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0966 1.6963 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0761 -1.2186 0.1607 9 6 1.3181 -2.4252 -0.2118 10 6 0.1478 -2.4471 -0.9951 11 6 -0.5134 -3.6238 -1.1939 12 6 -0.0338 -4.8016 -0.6250 13 8 -0.6970 -5.9677 -0.8280 14 6 -0.1525 -7.1387 -0.2162 15 6 -1.0291 -8.3459 -0.5552 16 1 -2.0588 -8.1410 -0.2619 17 8 -0.9748 -8.5941 -1.9614 18 6 -0.5187 -9.5749 0.1997 19 7 -1.4254 -10.7063 -0.0369 20 6 -2.7582 -10.4493 0.5506 21 6 -3.3031 -11.8027 1.0435 22 6 -2.1882 -12.8261 0.7278 23 6 -0.9227 -11.9383 0.6231 24 1 -0.5292 -11.7109 1.6138 25 6 0.1270 -12.6066 -0.2271 26 7 0.7116 -13.7452 0.1951 27 8 0.4450 -12.1203 -1.2917 28 6 1.1230 -4.7886 0.1512 29 6 1.7960 -3.6203 0.3598 30 1 -0.4851 0.8400 0.0004 31 1 -0.2229 -1.5357 -1.4404 32 1 -1.4112 -3.6423 -1.7940 33 1 0.8577 -7.3074 -0.5893 34 1 -0.1225 -7.0032 0.8650 35 1 -0.0866 -8.7843 -2.2932 36 1 0.4802 -9.8297 -0.1541 37 1 -0.4815 -9.3562 1.2669 38 1 -2.6677 -9.7581 1.3885 39 1 -3.4239 -10.0344 -0.2062 40 1 -3.4909 -11.7668 2.1166 41 1 -4.2164 -12.0607 0.5073 42 1 -2.0867 -13.5482 1.5380 43 1 -2.3845 -13.3309 -0.2181 44 1 0.4569 -14.1343 1.0465 45 1 1.3869 -14.1756 -0.3522 46 1 1.4880 -5.7059 0.5891 47 1 2.6924 -3.6118 0.9621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599601768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:53 Heat of formation + Delta-G solvation = -127.431716 kcal Electronic energy + Delta-G solvation = -28195.026918 eV Core-core repulsion = 24148.473241 eV Total energy + Delta-G solvation = -4046.553677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 13.71 seconds Orbital eigenvalues (eV) -41.22373 -40.60799 -39.24598 -38.38289 -37.37693 -35.15203 -34.67831 -33.41504 -31.86790 -31.04956 -30.53750 -30.11503 -27.03977 -26.08573 -24.16284 -23.34868 -22.58584 -22.35774 -21.38465 -20.94063 -19.25416 -18.79129 -18.44276 -17.93290 -17.59523 -17.35863 -17.04242 -16.52629 -16.09899 -15.89341 -15.73795 -15.55398 -15.48285 -15.21908 -14.71831 -14.38149 -14.18399 -14.06530 -13.98189 -13.86103 -13.53934 -13.11265 -13.07196 -12.79434 -12.73362 -12.67523 -12.42446 -12.33955 -12.20123 -11.90265 -11.66519 -11.60544 -11.55028 -11.22259 -10.95686 -10.93338 -10.83544 -10.58152 -9.58104 -9.37485 -8.87307 -8.54504 -6.26292 0.93719 1.01108 1.39814 1.51435 1.53211 1.69162 2.22259 2.24447 2.53375 2.75864 3.14914 3.47989 3.56942 3.65362 3.67750 3.89824 3.95676 4.04100 4.05299 4.17244 4.24312 4.25605 4.28391 4.33503 4.41440 4.53732 4.55871 4.75791 4.84467 4.90768 4.96081 5.01554 5.05682 5.12014 5.19809 5.28283 5.28894 5.56634 5.63890 5.78593 5.85929 5.93220 5.98146 6.05607 6.25652 6.55678 6.56065 6.77493 6.82121 6.95977 7.07939 7.44073 8.42141 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028007 B = 0.001937 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.515425 B =14455.534414 C =14844.277804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.028 3.972 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.052 3.948 10 C -0.143 4.143 11 C -0.138 4.138 12 C 0.006 3.994 13 O -0.331 6.331 14 C 0.032 3.968 15 C 0.127 3.873 16 H 0.097 0.903 17 O -0.559 6.559 18 C 0.032 3.968 19 N -0.506 5.506 20 C 0.027 3.973 21 C -0.124 4.124 22 C -0.103 4.103 23 C 0.040 3.960 24 H 0.102 0.898 25 C 0.519 3.481 26 N -0.837 5.837 27 O -0.574 6.574 28 C -0.169 4.169 29 C -0.201 4.201 30 H 0.285 0.715 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.380 0.620 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.115 0.885 43 H 0.066 0.934 44 H 0.417 0.583 45 H 0.407 0.593 46 H 0.128 0.872 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.947 -27.396 7.597 28.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.185 4.185 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.050 3.950 10 C -0.162 4.162 11 C -0.157 4.157 12 C -0.038 4.038 13 O -0.246 6.246 14 C -0.045 4.045 15 C 0.067 3.933 16 H 0.114 0.886 17 O -0.365 6.365 18 C -0.097 4.097 19 N -0.231 5.231 20 C -0.100 4.100 21 C -0.162 4.162 22 C -0.141 4.141 23 C -0.072 4.072 24 H 0.120 0.880 25 C 0.303 3.697 26 N -0.402 5.402 27 O -0.452 6.452 28 C -0.188 4.188 29 C -0.220 4.220 30 H 0.096 0.904 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.228 0.772 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.085 0.915 44 H 0.249 0.751 45 H 0.238 0.762 46 H 0.146 0.854 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.921 -26.785 6.344 27.804 hybrid contribution 1.309 0.769 0.900 1.765 sum -2.612 -26.016 7.243 27.132 Atomic orbital electron populations 1.69860 1.08808 1.30235 1.38038 1.26754 0.95667 1.04477 0.91569 0.85188 0.78544 0.75608 0.79927 1.18571 1.19449 1.18408 1.19672 0.95832 0.91440 1.45997 0.90571 1.17973 0.92954 0.93470 0.90622 1.20955 0.98512 0.95969 1.00798 1.20037 1.01096 0.91161 1.03435 1.18752 0.95348 0.85451 1.04228 1.85887 1.51996 1.14426 1.72320 1.23480 0.97985 0.84782 0.98222 1.21766 0.99734 0.89809 0.82010 0.88561 1.86571 1.35090 1.92735 1.22084 1.22735 0.97262 0.90629 0.99059 1.64274 1.02351 1.01857 1.54627 1.23007 0.90165 0.98809 0.98059 1.22402 0.98742 0.92502 1.02547 1.22474 0.91013 0.97183 1.03461 1.22868 0.95835 0.92271 0.96194 0.88049 1.20678 0.81769 0.81225 0.85986 1.43680 1.43906 1.26273 1.26363 1.90761 1.64196 1.65374 1.24907 1.20698 0.96563 0.98694 1.02796 1.20874 1.02842 0.93179 1.05152 0.90409 0.87050 0.87573 0.92002 0.91051 0.77163 0.90415 0.91704 0.92659 0.91437 0.88906 0.90280 0.86628 0.91520 0.75129 0.76201 0.85377 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.60 10.83 21.82 0.24 -45.36 16 2 C 0.03 1.43 5.26 85.24 0.45 1.88 16 3 Si 0.99 39.36 29.57 68.60 2.03 41.39 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 7 C -0.50 -27.52 9.05 23.40 0.21 -27.31 16 8 H 0.08 4.00 7.86 -2.91 -0.02 3.98 16 9 C 0.05 2.89 5.55 -21.28 -0.12 2.77 16 10 C -0.14 -7.92 8.59 22.48 0.19 -7.72 16 11 C -0.14 -7.08 9.92 22.11 0.22 -6.86 16 12 C 0.01 0.29 6.71 22.79 0.15 0.44 16 13 O -0.33 -13.88 10.09 -85.28 -0.86 -14.74 16 14 C 0.03 0.98 4.36 71.98 0.31 1.29 16 15 C 0.13 3.45 3.23 30.59 0.10 3.55 16 16 H 0.10 2.73 7.20 -2.39 -0.02 2.71 16 17 O -0.56 -17.93 13.25 -144.34 -1.91 -19.84 16 18 C 0.03 0.67 4.20 86.30 0.36 1.03 16 19 N -0.51 -10.18 4.52 -862.56 -3.90 -14.08 16 20 C 0.03 0.45 5.52 86.45 0.48 0.93 16 21 C -0.12 -1.21 6.93 31.48 0.22 -0.99 16 22 C -0.10 -0.87 6.49 31.80 0.21 -0.67 16 23 C 0.04 0.53 2.71 44.52 0.12 0.65 16 24 H 0.10 0.88 8.02 -2.39 -0.02 0.86 16 25 C 0.52 8.89 7.24 87.66 0.63 9.53 16 26 N -0.84 -6.21 8.87 -173.53 -1.54 -7.75 16 27 O -0.57 -16.38 16.68 -3.05 -0.05 -16.43 16 28 C -0.17 -7.59 8.96 22.11 0.20 -7.39 16 29 C -0.20 -10.02 9.74 22.48 0.22 -9.80 16 30 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 31 H 0.11 6.41 6.23 -2.91 -0.02 6.40 16 32 H 0.11 5.10 8.06 -2.91 -0.02 5.07 16 33 H 0.06 1.83 7.65 -2.39 -0.02 1.81 16 34 H 0.07 2.00 7.65 -2.38 -0.02 1.98 16 35 H 0.38 10.54 9.05 -74.05 -0.67 9.87 16 36 H 0.08 1.78 7.42 -2.39 -0.02 1.76 16 37 H 0.06 1.09 7.94 -2.39 -0.02 1.07 16 38 H 0.06 0.83 7.64 -2.39 -0.02 0.81 16 39 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 40 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.07 0.78 8.05 -2.39 -0.02 0.76 16 44 H 0.42 -0.03 8.83 -92.70 -0.82 -0.85 16 45 H 0.41 2.74 8.93 -92.71 -0.83 1.91 16 46 H 0.13 4.75 6.27 -2.91 -0.02 4.73 16 47 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -76.52 385.28 -3.34 -79.86 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -1.30 Total: 35.62 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 3.96 Total: -38.67 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -5.20 Total: -67.19 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -2.82 Total: -51.01 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -76.52 -3.34 -79.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599601768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.575 kcal (2) G-P(sol) polarization free energy of solvation -76.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.71 seconds