Wall clock time and date at job start Tue Mar 31 2020 20:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 114.00266 * 2 1 4 4 C 1.52999 * 109.47204 * 184.73028 * 3 2 1 5 5 N 1.46902 * 109.46693 * 69.38470 * 4 3 2 6 6 C 1.46899 * 110.99900 * 286.22054 * 5 4 3 7 7 C 1.50699 * 109.47158 * 302.81116 * 6 5 4 8 8 H 1.08003 * 120.00262 * 4.37121 * 7 6 5 9 9 C 1.37881 * 120.00035 * 184.36436 * 7 6 5 10 10 N 1.31515 * 119.99913 * 354.86142 * 9 7 6 11 11 Si 1.86799 * 120.00043 * 174.85772 * 9 7 6 12 12 H 1.48499 * 109.47241 * 5.00499 * 11 9 7 13 13 H 1.48503 * 109.47092 * 125.00299 * 11 9 7 14 14 H 1.48498 * 109.47217 * 245.00220 * 11 9 7 15 15 C 1.46903 * 110.99720 * 162.27318 * 5 4 3 16 16 C 1.50700 * 109.46966 * 190.00045 * 15 5 4 17 17 C 1.35377 * 126.73388 * 94.99847 * 16 15 5 18 18 N 1.36106 * 106.04969 * 180.02562 * 17 16 15 19 19 C 1.40301 * 125.94323 * 180.02562 * 18 17 16 20 20 C 1.38817 * 120.03838 * 359.72945 * 19 18 17 21 21 C 1.38107 * 119.96242 * 179.71581 * 20 19 18 22 22 C 1.38494 * 120.03536 * 0.55285 * 21 20 19 23 23 F 1.35095 * 119.95711 * 179.73945 * 22 21 20 24 24 C 1.38478 * 120.07641 * 359.72465 * 22 21 20 25 25 C 1.38103 * 120.04643 * 359.97438 * 24 22 21 26 26 N 1.28728 * 108.11848 * 359.97438 * 18 17 16 27 27 N 1.28610 * 110.23385 * 359.97438 * 26 18 17 28 28 H 1.08997 * 109.47557 * 64.93657 * 1 2 3 29 29 H 1.08995 * 109.46920 * 184.94511 * 1 2 3 30 30 H 1.09004 * 109.46416 * 304.93858 * 1 2 3 31 31 H 1.09004 * 109.46658 * 64.73223 * 3 2 1 32 32 H 1.08997 * 109.47247 * 304.73716 * 3 2 1 33 33 H 1.08992 * 109.47333 * 309.38446 * 4 3 2 34 34 H 1.09005 * 109.46675 * 189.37705 * 4 3 2 35 35 H 1.09001 * 109.47115 * 62.81363 * 6 5 4 36 36 H 1.08995 * 109.47176 * 182.81031 * 6 5 4 37 37 H 0.97002 * 119.99812 * 179.97438 * 10 9 7 38 38 H 1.08993 * 109.47278 * 69.99317 * 15 5 4 39 39 H 1.09008 * 109.46745 * 309.99637 * 15 5 4 40 40 H 1.07995 * 126.97766 * 0.05180 * 17 16 15 41 41 H 1.08007 * 120.01876 * 359.97438 * 20 19 18 42 42 H 1.08001 * 119.98418 * 180.27500 * 21 20 19 43 43 H 1.08003 * 119.97544 * 179.97438 * 24 22 21 44 44 H 1.07995 * 120.02281 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5310 1.1866 -0.1190 5 7 3.8810 0.7062 -1.4624 6 6 3.5710 -0.7224 -1.6078 7 6 4.3023 -1.5055 -0.5481 8 1 4.8775 -0.9880 0.2054 9 6 4.2371 -2.8827 -0.5405 10 7 3.4569 -3.5088 -1.3942 11 14 5.2568 -3.8593 0.6825 12 1 5.9511 -2.9256 1.6053 13 1 4.3678 -4.7569 1.4631 14 1 6.2622 -4.6718 -0.0485 15 6 5.2937 0.9718 -1.7650 16 6 5.5558 0.6948 -3.2229 17 6 5.5433 1.5957 -4.2333 18 7 5.8321 0.8964 -5.3647 19 6 5.9271 1.4279 -6.6596 20 6 5.7127 2.7828 -6.8722 21 6 5.8123 3.3053 -8.1467 22 6 6.1148 2.4763 -9.2141 23 9 6.2067 2.9882 -10.4609 24 6 6.3234 1.1234 -9.0047 25 6 6.2306 0.5985 -7.7307 26 7 6.0040 -0.3373 -5.0398 27 7 5.8473 -0.4895 -3.7724 28 1 -0.3634 0.4353 -0.9308 29 1 -0.3633 -1.0238 0.0886 30 1 -0.3632 0.5886 0.8425 31 1 1.7573 1.8158 0.9294 32 1 1.6232 1.8756 -0.8445 33 1 3.8998 0.4821 0.6264 34 1 3.9859 2.1632 0.0476 35 1 2.4975 -0.8745 -1.4961 36 1 3.8856 -1.0638 -2.5939 37 1 3.4112 -4.4777 -1.3891 38 1 5.9239 0.3262 -1.1534 39 1 5.5221 2.0150 -1.5466 40 1 5.3449 2.6546 -4.1570 41 1 5.4721 3.4287 -6.0407 42 1 5.6499 4.3602 -8.3118 43 1 6.5587 0.4784 -9.8383 44 1 6.3938 -0.4565 -7.5677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600116318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:46 Heat of formation + Delta-G solvation = 63.932641 kcal Electronic energy + Delta-G solvation = -28317.910198 eV Core-core repulsion = 24188.487149 eV Total energy + Delta-G solvation = -4129.423050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 36.09 seconds Orbital eigenvalues (eV) -49.27665 -43.10645 -39.42217 -37.74674 -36.09271 -34.27627 -32.30424 -31.95180 -31.20141 -29.62705 -28.94558 -27.03331 -25.80748 -24.59711 -24.18541 -23.49197 -22.53166 -21.38497 -20.73603 -19.60463 -18.47064 -17.76162 -16.53402 -16.39766 -16.27296 -15.92915 -15.76512 -15.50254 -15.35686 -14.67306 -14.47188 -14.12710 -14.01313 -13.91964 -13.77027 -13.59373 -13.52604 -12.89395 -12.85752 -12.31632 -11.95680 -11.72985 -11.37639 -11.30115 -11.00915 -10.88920 -10.78448 -10.67603 -10.55101 -10.47461 -10.35575 -9.84904 -9.71268 -9.65206 -9.34605 -8.99631 -8.83838 -8.54391 -8.06812 -7.09262 -5.74147 -3.76228 0.32773 0.71398 1.99503 2.36028 2.96617 3.21584 3.44241 3.51457 3.52830 3.80194 4.13885 4.31458 4.51391 4.53912 4.64634 4.69581 4.77427 5.03786 5.20320 5.29588 5.37970 5.43745 5.56454 5.59582 5.61011 5.65804 5.69822 5.81863 5.86524 5.91481 5.96258 6.07907 6.18534 6.20124 6.27796 6.30545 6.48174 6.68037 6.80831 6.92570 7.47151 7.86841 7.93730 8.18172 8.26079 8.46602 8.57057 8.87988 9.28652 9.85389 11.33466 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013719 B = 0.002917 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.499130 B = 9596.887661 C =10733.665322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.352 6.352 3 C 0.073 3.927 4 C 0.055 3.945 5 N -0.538 5.538 6 C 0.180 3.820 7 C -0.525 4.525 8 H 0.050 0.950 9 C 0.070 3.930 10 N -0.887 5.887 11 Si 0.880 3.120 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.285 1.285 15 C 0.136 3.864 16 C 0.026 3.974 17 C -0.052 4.052 18 N -0.261 5.261 19 C 0.134 3.866 20 C -0.095 4.095 21 C -0.131 4.131 22 C 0.096 3.904 23 F -0.136 7.136 24 C -0.131 4.131 25 C -0.078 4.078 26 N -0.090 5.090 27 N -0.214 5.214 28 H 0.031 0.969 29 H 0.079 0.921 30 H 0.027 0.973 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.256 0.744 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.189 0.811 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.354 16.973 -10.826 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C -0.005 4.005 4 C -0.073 4.073 5 N -0.263 5.263 6 C 0.055 3.945 7 C -0.565 4.565 8 H 0.068 0.932 9 C -0.131 4.131 10 N -0.527 5.527 11 Si 0.708 3.292 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.212 1.212 15 C 0.006 3.994 16 C -0.110 4.110 17 C -0.199 4.199 18 N -0.048 5.048 19 C 0.041 3.959 20 C -0.116 4.116 21 C -0.151 4.151 22 C 0.076 3.924 23 F -0.114 7.114 24 C -0.151 4.151 25 C -0.098 4.098 26 N -0.067 5.067 27 N -0.082 5.082 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.206 0.794 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.166 0.834 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.442 15.457 -11.689 19.532 hybrid contribution 0.500 0.261 1.304 1.421 sum 2.942 15.718 -10.385 19.067 Atomic orbital electron populations 1.22626 0.83365 1.02017 0.98483 1.88347 1.17466 1.26450 1.94729 1.22446 0.94545 0.85350 0.98114 1.22008 0.93432 0.99056 0.92828 1.62713 1.15534 1.23212 1.24824 1.20045 0.98302 0.79268 0.96925 1.21503 1.30267 0.91732 1.12956 0.93164 1.24793 0.95158 0.97754 0.95441 1.69963 1.37835 1.08039 1.36852 0.86755 0.80485 0.80417 0.81508 1.20193 1.21499 1.21174 1.20204 0.92694 0.99457 0.87031 1.22000 1.02434 0.88642 0.97899 1.23385 1.10580 1.00912 0.84993 1.44635 1.46612 1.07566 1.05985 1.17699 1.03479 0.92938 0.81783 1.20778 1.00262 0.92635 0.97948 1.20964 1.02279 1.00898 0.90922 1.17764 1.02473 0.92302 0.79867 1.91522 1.93662 1.87421 1.38817 1.21074 1.02276 0.93703 0.98023 1.20898 0.97626 1.01296 0.89971 1.78432 1.20040 0.97606 1.10669 1.75365 1.12764 1.22311 0.97727 0.95003 0.90223 0.95429 0.94570 0.93780 0.91780 0.91909 0.92734 0.94525 0.93444 0.91732 0.91187 0.79441 0.83663 0.83487 0.83449 0.82845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.64 16 2 O -0.35 -7.35 7.95 -35.23 -0.28 -7.63 16 3 C 0.07 1.26 6.20 37.16 0.23 1.49 16 4 C 0.06 1.01 5.32 -3.82 -0.02 0.99 16 5 N -0.54 -11.21 4.65 -237.52 -1.10 -12.31 16 6 C 0.18 4.72 4.57 -4.98 -0.02 4.70 16 7 C -0.53 -14.76 7.35 -34.44 -0.25 -15.01 16 8 H 0.05 1.39 5.95 -52.48 -0.31 1.08 16 9 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 10 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 11 Si 0.88 22.61 29.54 -169.99 -5.02 17.59 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 15 C 0.14 2.54 5.37 -4.97 -0.03 2.51 16 16 C 0.03 0.50 5.98 -82.77 -0.49 0.00 16 17 C -0.05 -0.77 10.85 -16.68 -0.18 -0.95 16 18 N -0.26 -4.04 3.56 -10.46 -0.04 -4.08 16 19 C 0.13 1.59 6.68 -83.55 -0.56 1.03 16 20 C -0.10 -0.83 9.45 -39.42 -0.37 -1.21 16 21 C -0.13 -1.00 10.02 -39.54 -0.40 -1.39 16 22 C 0.10 0.83 7.30 -39.40 -0.29 0.55 16 23 F -0.14 -1.24 17.27 2.25 0.04 -1.20 16 24 C -0.13 -1.14 10.02 -39.54 -0.40 -1.54 16 25 C -0.08 -0.84 9.62 -39.42 -0.38 -1.22 16 26 N -0.09 -1.75 12.41 60.35 0.75 -1.00 16 27 N -0.21 -4.77 11.25 33.29 0.37 -4.40 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 1.36 5.86 -51.93 -0.30 1.06 16 34 H 0.06 0.92 7.77 -51.93 -0.40 0.52 16 35 H 0.05 1.58 5.71 -51.93 -0.30 1.28 16 36 H 0.04 1.08 6.22 -51.93 -0.32 0.75 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 38 H 0.06 1.37 6.86 -51.93 -0.36 1.01 16 39 H 0.07 1.01 7.84 -51.92 -0.41 0.60 16 40 H 0.19 1.88 7.10 -52.49 -0.37 1.51 16 41 H 0.15 0.95 6.77 -52.48 -0.36 0.60 16 42 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 44 H 0.15 1.72 7.69 -52.49 -0.40 1.32 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -35.31 369.34 -6.75 -42.06 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.63 Total: -1.40 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.14 Total: -6.44 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.72 Total: -48.54 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.28 Total: -7.63 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.31 -6.75 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.992 kcal (2) G-P(sol) polarization free energy of solvation -35.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 36.09 seconds