Wall clock time and date at job start Tue Mar 31 2020 20:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 114.00266 * 2 1 4 4 C 1.52999 * 109.47204 * 184.73028 * 3 2 1 5 5 N 1.46902 * 109.46693 * 69.38470 * 4 3 2 6 6 C 1.46899 * 110.99900 * 286.22054 * 5 4 3 7 7 C 1.50699 * 109.47158 * 302.81116 * 6 5 4 8 8 H 1.08003 * 120.00262 * 4.37121 * 7 6 5 9 9 C 1.37881 * 120.00035 * 184.36436 * 7 6 5 10 10 N 1.31515 * 119.99913 * 354.86142 * 9 7 6 11 11 Si 1.86799 * 120.00043 * 174.85772 * 9 7 6 12 12 H 1.48499 * 109.47241 * 5.00499 * 11 9 7 13 13 H 1.48503 * 109.47092 * 125.00299 * 11 9 7 14 14 H 1.48498 * 109.47217 * 245.00220 * 11 9 7 15 15 C 1.46903 * 110.99720 * 162.27318 * 5 4 3 16 16 C 1.50700 * 109.46966 * 190.00045 * 15 5 4 17 17 C 1.35377 * 126.73388 * 94.99847 * 16 15 5 18 18 N 1.36106 * 106.04969 * 180.02562 * 17 16 15 19 19 C 1.40301 * 125.94323 * 180.02562 * 18 17 16 20 20 C 1.38817 * 120.03838 * 359.72945 * 19 18 17 21 21 C 1.38107 * 119.96242 * 179.71581 * 20 19 18 22 22 C 1.38494 * 120.03536 * 0.55285 * 21 20 19 23 23 F 1.35095 * 119.95711 * 179.73945 * 22 21 20 24 24 C 1.38478 * 120.07641 * 359.72465 * 22 21 20 25 25 C 1.38103 * 120.04643 * 359.97438 * 24 22 21 26 26 N 1.28728 * 108.11848 * 359.97438 * 18 17 16 27 27 N 1.28610 * 110.23385 * 359.97438 * 26 18 17 28 28 H 1.08997 * 109.47557 * 64.93657 * 1 2 3 29 29 H 1.08995 * 109.46920 * 184.94511 * 1 2 3 30 30 H 1.09004 * 109.46416 * 304.93858 * 1 2 3 31 31 H 1.09004 * 109.46658 * 64.73223 * 3 2 1 32 32 H 1.08997 * 109.47247 * 304.73716 * 3 2 1 33 33 H 1.08992 * 109.47333 * 309.38446 * 4 3 2 34 34 H 1.09005 * 109.46675 * 189.37705 * 4 3 2 35 35 H 1.09001 * 109.47115 * 62.81363 * 6 5 4 36 36 H 1.08995 * 109.47176 * 182.81031 * 6 5 4 37 37 H 0.97002 * 119.99812 * 179.97438 * 10 9 7 38 38 H 1.08993 * 109.47278 * 69.99317 * 15 5 4 39 39 H 1.09008 * 109.46745 * 309.99637 * 15 5 4 40 40 H 1.07995 * 126.97766 * 0.05180 * 17 16 15 41 41 H 1.08007 * 120.01876 * 359.97438 * 20 19 18 42 42 H 1.08001 * 119.98418 * 180.27500 * 21 20 19 43 43 H 1.08003 * 119.97544 * 179.97438 * 24 22 21 44 44 H 1.07995 * 120.02281 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5310 1.1866 -0.1190 5 7 3.8810 0.7062 -1.4624 6 6 3.5710 -0.7224 -1.6078 7 6 4.3023 -1.5055 -0.5481 8 1 4.8775 -0.9880 0.2054 9 6 4.2371 -2.8827 -0.5405 10 7 3.4569 -3.5088 -1.3942 11 14 5.2568 -3.8593 0.6825 12 1 5.9511 -2.9256 1.6053 13 1 4.3678 -4.7569 1.4631 14 1 6.2622 -4.6718 -0.0485 15 6 5.2937 0.9718 -1.7650 16 6 5.5558 0.6948 -3.2229 17 6 5.5433 1.5957 -4.2333 18 7 5.8321 0.8964 -5.3647 19 6 5.9271 1.4279 -6.6596 20 6 5.7127 2.7828 -6.8722 21 6 5.8123 3.3053 -8.1467 22 6 6.1148 2.4763 -9.2141 23 9 6.2067 2.9882 -10.4609 24 6 6.3234 1.1234 -9.0047 25 6 6.2306 0.5985 -7.7307 26 7 6.0040 -0.3373 -5.0398 27 7 5.8473 -0.4895 -3.7724 28 1 -0.3634 0.4353 -0.9308 29 1 -0.3633 -1.0238 0.0886 30 1 -0.3632 0.5886 0.8425 31 1 1.7573 1.8158 0.9294 32 1 1.6232 1.8756 -0.8445 33 1 3.8998 0.4821 0.6264 34 1 3.9859 2.1632 0.0476 35 1 2.4975 -0.8745 -1.4961 36 1 3.8856 -1.0638 -2.5939 37 1 3.4112 -4.4777 -1.3891 38 1 5.9239 0.3262 -1.1534 39 1 5.5221 2.0150 -1.5466 40 1 5.3449 2.6546 -4.1570 41 1 5.4721 3.4287 -6.0407 42 1 5.6499 4.3602 -8.3118 43 1 6.5587 0.4784 -9.8383 44 1 6.3938 -0.4565 -7.5677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600116318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:12 Heat of formation + Delta-G solvation = 38.742586 kcal Electronic energy + Delta-G solvation = -28319.002521 eV Core-core repulsion = 24188.487149 eV Total energy + Delta-G solvation = -4130.515372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 27.91 seconds Orbital eigenvalues (eV) -49.98944 -44.36432 -40.22564 -39.25439 -37.61660 -35.43071 -34.41004 -33.03449 -32.22635 -30.68747 -30.30333 -28.88380 -27.13031 -26.25873 -25.21642 -24.67280 -23.93348 -22.44968 -21.99693 -21.21193 -19.46194 -18.64103 -18.33161 -17.63206 -17.28318 -17.18426 -16.98020 -16.64832 -16.56287 -16.30727 -15.72936 -15.45722 -15.34290 -15.29630 -14.71195 -14.67840 -14.38449 -14.28026 -13.92315 -13.77841 -13.49592 -13.05024 -12.91649 -12.83387 -12.58253 -12.41185 -12.34237 -12.20920 -12.09067 -11.87801 -11.76741 -11.63875 -11.39713 -11.38581 -10.49040 -10.33345 -10.26684 -10.08586 -9.50249 -8.87665 -7.96008 -6.05912 -0.53744 0.03639 0.93363 1.33231 1.36362 1.38938 1.47760 1.58012 2.42929 2.48134 3.10113 3.22173 3.27829 3.33729 3.49389 3.63458 3.71553 3.86655 4.00968 4.11780 4.21886 4.38048 4.40350 4.53127 4.57938 4.59338 4.65379 4.68217 4.78863 4.80465 4.88286 4.91966 4.94093 4.94722 5.07423 5.13971 5.29938 5.34922 5.52033 5.57309 5.68448 5.88887 6.08376 6.25231 6.39842 6.60153 6.74090 7.12546 7.55947 7.59321 9.08895 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013719 B = 0.002917 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.499130 B = 9596.887661 C =10733.665322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.402 6.402 3 C 0.070 3.930 4 C 0.052 3.948 5 N -0.532 5.532 6 C 0.202 3.798 7 C -0.516 4.516 8 H 0.051 0.949 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.941 3.059 12 H -0.264 1.264 13 H -0.284 1.284 14 H -0.289 1.289 15 C 0.139 3.861 16 C -0.010 4.010 17 C -0.020 4.020 18 N -0.248 5.248 19 C 0.094 3.906 20 C -0.079 4.079 21 C -0.120 4.120 22 C 0.098 3.902 23 F -0.136 7.136 24 C -0.131 4.131 25 C -0.090 4.090 26 N -0.126 5.126 27 N -0.282 5.282 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.030 0.970 34 H 0.112 0.888 35 H 0.026 0.974 36 H 0.000 1.000 37 H 0.254 0.746 38 H 0.029 0.971 39 H 0.124 0.876 40 H 0.245 0.755 41 H 0.177 0.823 42 H 0.182 0.818 43 H 0.164 0.836 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.535 21.346 -11.018 24.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.321 6.321 3 C -0.006 4.006 4 C -0.075 4.075 5 N -0.256 5.256 6 C 0.075 3.925 7 C -0.556 4.556 8 H 0.069 0.931 9 C -0.188 4.188 10 N -0.570 5.570 11 Si 0.768 3.232 12 H -0.189 1.189 13 H -0.210 1.210 14 H -0.215 1.215 15 C 0.010 3.990 16 C -0.147 4.147 17 C -0.169 4.169 18 N -0.035 5.035 19 C 0.003 3.997 20 C -0.100 4.100 21 C -0.139 4.139 22 C 0.078 3.922 23 F -0.114 7.114 24 C -0.150 4.150 25 C -0.110 4.110 26 N -0.103 5.103 27 N -0.148 5.148 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.130 0.870 35 H 0.044 0.956 36 H 0.018 0.982 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.142 0.858 40 H 0.261 0.739 41 H 0.194 0.806 42 H 0.199 0.801 43 H 0.182 0.818 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.638 19.837 -11.899 23.282 hybrid contribution 0.446 -0.901 1.177 1.548 sum 3.084 18.936 -10.722 21.978 Atomic orbital electron populations 1.22722 0.81524 1.02117 1.00234 1.88270 1.19812 1.28950 1.95115 1.22615 0.93506 0.84335 1.00169 1.22198 0.94774 1.00359 0.90209 1.62595 1.17288 1.19262 1.26491 1.19502 0.96010 0.82613 0.94329 1.21811 1.29078 0.91939 1.12740 0.93086 1.25609 0.96500 0.99195 0.97451 1.70109 1.39870 1.08017 1.39029 0.85771 0.78896 0.79059 0.79473 1.18855 1.20980 1.21514 1.20316 0.90346 1.01655 0.86705 1.22238 1.04650 0.88880 0.98961 1.24048 1.07164 1.02384 0.83286 1.44881 1.44427 1.06635 1.07563 1.18151 1.06620 0.94628 0.80332 1.21108 0.98344 0.91121 0.99402 1.21326 1.00423 1.02331 0.89778 1.17951 1.01708 0.92321 0.80200 1.91531 1.93569 1.87340 1.39003 1.21192 1.01808 0.94412 0.97555 1.20878 0.98426 1.00774 0.90930 1.78311 1.22201 0.99854 1.09932 1.75273 1.15299 1.25053 0.99203 0.94131 0.91351 0.92360 0.91347 0.92688 0.95157 0.87044 0.95633 0.98180 0.93742 0.95263 0.85800 0.73898 0.80573 0.80051 0.81805 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 11.01 113.37 1.25 2.23 16 2 O -0.40 -16.86 7.95 -148.98 -1.18 -18.05 16 3 C 0.07 2.29 6.20 71.98 0.45 2.74 16 4 C 0.05 1.84 5.32 86.30 0.46 2.30 16 5 N -0.53 -21.93 4.65 -905.37 -4.21 -26.13 16 6 C 0.20 11.07 4.57 85.56 0.39 11.46 16 7 C -0.52 -30.10 7.35 25.60 0.19 -29.91 16 8 H 0.05 2.90 5.95 -2.91 -0.02 2.89 16 9 C 0.01 0.61 5.45 84.66 0.46 1.07 16 10 N -0.93 -60.45 13.29 21.45 0.29 -60.16 16 11 Si 0.94 48.09 29.54 68.60 2.03 50.11 16 12 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 14 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 15 C 0.14 5.07 5.37 85.56 0.46 5.53 16 16 C -0.01 -0.37 5.98 41.60 0.25 -0.12 16 17 C -0.02 -0.56 10.85 83.37 0.90 0.34 16 18 N -0.25 -7.57 3.56 -187.02 -0.67 -8.24 16 19 C 0.09 2.10 6.68 38.06 0.25 2.35 16 20 C -0.08 -1.07 9.45 22.38 0.21 -0.86 16 21 C -0.12 -1.30 10.02 22.30 0.22 -1.07 16 22 C 0.10 1.41 7.30 22.39 0.16 1.58 16 23 F -0.14 -2.08 17.27 44.97 0.78 -1.30 16 24 C -0.13 -2.09 10.02 22.29 0.22 -1.87 16 25 C -0.09 -1.94 9.62 22.38 0.22 -1.73 16 26 N -0.13 -5.18 12.41 37.02 0.46 -4.72 16 27 N -0.28 -13.29 11.25 -48.59 -0.55 -13.84 16 28 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 33 H 0.03 1.27 5.86 -2.39 -0.01 1.26 16 34 H 0.11 2.79 7.77 -2.38 -0.02 2.77 16 35 H 0.03 1.56 5.71 -2.39 -0.01 1.54 16 36 H 0.00 0.01 6.22 -2.39 -0.01 -0.01 16 37 H 0.25 15.77 8.31 -92.71 -0.77 15.00 16 38 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 39 H 0.12 3.08 7.84 -2.38 -0.02 3.06 16 40 H 0.24 3.48 7.10 -2.91 -0.02 3.46 16 41 H 0.18 1.23 6.77 -2.91 -0.02 1.21 16 42 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 43 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 44 H 0.14 3.35 7.69 -2.91 -0.02 3.32 16 Total: -1.00 -85.30 369.34 4.07 -81.23 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.03 Total: 7.08 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 6.10 Total: -5.97 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -4.67 Total: -113.10 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -1.18 Total: -18.05 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.78 Total: -1.30 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.11 kcal Total: -85.30 4.07 -81.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.970 kcal (2) G-P(sol) polarization free energy of solvation -85.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.92 seconds