Wall clock time and date at job start Tue Mar 31 2020 23:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86799 * 120.00084 * 2 1 4 4 H 1.48500 * 109.47183 * 270.00199 * 3 2 1 5 5 H 1.48504 * 109.47103 * 29.99844 * 3 2 1 6 6 H 1.48497 * 109.47614 * 150.00048 * 3 2 1 7 7 C 1.37875 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00502 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47469 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47102 * 55.00252 * 10 9 7 12 12 N 1.46498 * 109.47358 * 295.00373 * 10 9 7 13 13 C 1.34774 * 120.00384 * 154.99763 * 12 10 9 14 14 O 1.21583 * 119.99936 * 359.97438 * 13 12 10 15 15 N 1.34776 * 120.00161 * 179.97438 * 13 12 10 16 16 C 1.46492 * 120.00129 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.62093 * 34.77903 * 16 15 13 18 18 C 1.53184 * 109.54793 * 274.55397 * 16 15 13 19 19 C 1.53085 * 109.16730 * 183.14985 * 18 16 15 20 20 O 1.42908 * 109.41265 * 57.61113 * 19 18 16 21 21 C 1.42899 * 114.09678 * 298.83890 * 20 19 18 22 22 C 1.53091 * 109.41444 * 61.16229 * 21 20 19 23 23 H 1.08998 * 109.52465 * 62.35836 * 22 21 20 24 24 O 1.42905 * 109.52393 * 182.48348 * 22 21 20 25 25 C 1.50702 * 109.47410 * 174.99706 * 10 9 7 26 26 C 1.38236 * 119.99316 * 79.73036 * 25 10 9 27 27 C 1.38247 * 119.99089 * 179.74355 * 26 25 10 28 28 C 1.38222 * 120.00019 * 0.55084 * 27 26 25 29 29 C 1.38235 * 120.00387 * 359.70164 * 28 27 26 30 30 C 1.38228 * 120.00088 * 0.02562 * 29 28 27 31 31 H 0.96999 * 120.00185 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47627 * 60.00188 * 9 7 2 33 33 H 1.09007 * 109.47168 * 299.99825 * 9 7 2 34 34 H 0.97000 * 119.99623 * 334.99319 * 12 10 9 35 35 H 0.97000 * 119.99846 * 359.97438 * 15 13 12 36 36 H 1.09007 * 109.51599 * 63.24574 * 18 16 15 37 37 H 1.09000 * 109.51666 * 303.06657 * 18 16 15 38 38 H 1.08997 * 109.48208 * 297.63192 * 19 18 16 39 39 H 1.08996 * 109.48201 * 177.58834 * 19 18 16 40 40 H 1.08991 * 109.48614 * 301.17424 * 21 20 19 41 41 H 1.09007 * 109.47757 * 181.14036 * 21 20 19 42 42 H 0.96696 * 114.00036 * 299.99764 * 24 22 21 43 43 H 1.07992 * 120.00508 * 359.97438 * 26 25 10 44 44 H 1.08003 * 119.99187 * 180.27155 * 27 26 25 45 45 H 1.08008 * 119.99821 * 179.72162 * 28 27 26 46 46 H 1.08000 * 120.00172 * 180.02562 * 29 28 27 47 47 H 1.07995 * 120.00351 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 1 2.9301 -3.5556 0.8396 12 7 3.0054 -3.6533 -1.2541 13 6 4.2300 -4.2139 -1.3031 14 8 4.7042 -4.7265 -0.3078 15 7 4.9291 -4.2063 -2.4554 16 6 6.2604 -4.8152 -2.5084 17 1 6.2901 -5.6879 -1.8560 18 6 7.3085 -3.7966 -2.0496 19 6 8.7025 -4.4150 -2.1830 20 8 8.9166 -4.8159 -3.5379 21 6 7.9953 -5.8025 -4.0068 22 6 6.5728 -5.2399 -3.9467 23 1 6.4943 -4.3767 -4.6076 24 8 5.6441 -6.2441 -4.3604 25 6 1.4960 -4.9637 0.1221 26 6 0.8888 -5.5199 -0.9883 27 6 0.2060 -6.7167 -0.8757 28 6 0.1208 -7.3512 0.3494 29 6 0.7236 -6.7923 1.4607 30 6 1.4112 -5.5985 1.3471 31 1 -0.4850 0.8400 0.0004 32 1 0.6241 -2.5568 -0.8903 33 1 0.6247 -2.5571 0.8897 34 1 2.6272 -3.2441 -2.0481 35 1 4.5506 -3.7977 -3.2496 36 1 7.1262 -3.5304 -1.0083 37 1 7.2450 -2.9035 -2.6713 38 1 8.7785 -5.2846 -1.5303 39 1 9.4551 -3.6797 -1.8984 40 1 8.0620 -6.6903 -3.3780 41 1 8.2385 -6.0668 -5.0361 42 1 5.7861 -6.5637 -5.2619 43 1 0.9510 -5.0215 -1.9443 44 1 -0.2647 -7.1535 -1.7441 45 1 -0.4165 -8.2839 0.4382 46 1 0.6574 -7.2883 2.4178 47 1 1.8818 -5.1616 2.2154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602278202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:31 Heat of formation + Delta-G solvation = -107.270449 kcal Electronic energy + Delta-G solvation = -29378.438557 eV Core-core repulsion = 25332.759138 eV Total energy + Delta-G solvation = -4045.679419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.33456 -39.38214 -38.40603 -36.78036 -35.42049 -34.41181 -32.74566 -31.77523 -30.60929 -30.36521 -29.87686 -28.65012 -25.25867 -24.36411 -23.60340 -22.23858 -21.90634 -20.87875 -20.57830 -19.72015 -18.00591 -17.67587 -17.05434 -16.59003 -16.44566 -16.11298 -15.47817 -15.31723 -14.83922 -14.72978 -14.55379 -14.28550 -14.12245 -13.82004 -13.48025 -13.29811 -13.06885 -12.92174 -12.63844 -12.47614 -12.40404 -12.07453 -11.67405 -11.56447 -11.49517 -11.11586 -10.88989 -10.70277 -10.69566 -10.59831 -10.52780 -10.41524 -9.90354 -9.74626 -9.53545 -9.27119 -8.88584 -8.48842 -8.43151 -8.25790 -8.11355 -6.07811 -4.10814 1.84579 1.87189 3.08433 3.26622 3.34324 3.38346 3.42611 3.72590 3.93987 4.26267 4.39252 4.40501 4.51143 4.68376 4.79662 4.88485 4.99150 5.16476 5.28970 5.30860 5.32329 5.33780 5.35533 5.43825 5.51125 5.60781 5.65232 5.86891 5.97570 6.00411 6.06145 6.21288 6.42096 6.48815 6.63095 6.74022 6.79455 6.91044 6.91483 7.01802 7.16539 7.31560 7.36382 7.47362 7.54308 7.71706 7.89423 8.28067 8.56858 8.95135 9.14939 9.53895 11.02798 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007866 B = 0.004244 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.877372 B = 6595.957027 C = 9270.242372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.203 3.797 11 H 0.086 0.914 12 N -0.716 5.716 13 C 0.707 3.293 14 O -0.599 6.599 15 N -0.741 5.741 16 C 0.176 3.824 17 H 0.093 0.907 18 C -0.167 4.167 19 C 0.061 3.939 20 O -0.378 6.378 21 C 0.035 3.965 22 C 0.064 3.936 23 H 0.069 0.931 24 O -0.551 6.551 25 C -0.070 4.070 26 C -0.105 4.105 27 C -0.126 4.126 28 C -0.136 4.136 29 C -0.124 4.124 30 C -0.108 4.108 31 H 0.261 0.739 32 H 0.024 0.976 33 H 0.035 0.965 34 H 0.396 0.604 35 H 0.394 0.606 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.098 0.902 42 H 0.377 0.623 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.754 -12.676 -8.753 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.098 3.902 11 H 0.104 0.896 12 N -0.368 5.368 13 C 0.407 3.593 14 O -0.478 6.478 15 N -0.395 5.395 16 C 0.069 3.931 17 H 0.112 0.888 18 C -0.207 4.207 19 C -0.017 4.017 20 O -0.297 6.297 21 C -0.043 4.043 22 C 0.004 3.996 23 H 0.087 0.913 24 O -0.356 6.356 25 C -0.072 4.072 26 C -0.123 4.123 27 C -0.144 4.144 28 C -0.154 4.154 29 C -0.142 4.142 30 C -0.127 4.127 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.230 0.770 35 H 0.228 0.772 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.224 0.776 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.921 -12.836 -7.305 18.368 hybrid contribution -0.036 1.207 -1.191 1.696 sum 10.885 -11.628 -8.497 18.052 Atomic orbital electron populations 1.69955 1.06003 1.26747 1.50430 1.24981 0.94780 0.99170 0.95225 0.86605 0.79922 0.83503 0.78034 1.20766 1.21236 1.19896 1.21134 0.93073 0.90365 1.50997 0.92410 1.19399 0.93238 0.90212 0.98543 1.20102 0.92891 0.91642 0.85588 0.89630 1.45116 1.16123 1.60915 1.14598 1.15955 0.81078 0.79127 0.83173 1.90858 1.70773 1.51851 1.34348 1.44941 1.18101 1.64260 1.12236 1.20644 0.82027 0.96102 0.94293 0.88849 1.22703 0.94288 0.99439 1.04231 1.22674 0.96695 0.99463 0.82820 1.87945 1.53720 1.59039 1.28969 1.23285 0.88387 0.91672 1.00963 1.22791 0.89105 0.91316 0.96406 0.91323 1.86664 1.55230 1.58036 1.35676 1.20603 0.96579 0.96720 0.93276 1.20888 0.97450 0.95524 0.98478 1.21030 1.00037 0.96004 0.97300 1.20975 1.01149 1.00024 0.93247 1.21026 0.98672 0.96243 0.98241 1.21008 0.99110 0.95089 0.97449 0.92903 0.95786 0.94701 0.77004 0.77208 0.89027 0.90546 0.92530 0.88123 0.91997 0.88428 0.77561 0.86689 0.86848 0.86928 0.86684 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -13.74 8.84 -34.44 -0.30 -14.04 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.57 4.49 -27.88 -0.13 0.44 16 10 C 0.20 4.23 2.11 -69.08 -0.15 4.09 16 11 H 0.09 1.96 7.44 -51.92 -0.39 1.58 16 12 N -0.72 -13.30 4.05 -59.81 -0.24 -13.54 16 13 C 0.71 13.10 8.49 -86.92 -0.74 12.36 16 14 O -0.60 -13.15 15.67 5.29 0.08 -13.07 16 15 N -0.74 -10.65 5.01 -58.50 -0.29 -10.94 16 16 C 0.18 2.24 2.22 -67.75 -0.15 2.09 16 17 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 18 C -0.17 -1.96 5.72 -26.59 -0.15 -2.11 16 19 C 0.06 0.59 6.84 37.20 0.25 0.85 16 20 O -0.38 -3.88 10.77 -35.23 -0.38 -4.26 16 21 C 0.03 0.29 6.47 37.20 0.24 0.53 16 22 C 0.06 0.61 3.17 -26.59 -0.08 0.53 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 24 O -0.55 -5.34 13.25 -35.23 -0.47 -5.80 16 25 C -0.07 -1.36 4.91 -104.62 -0.51 -1.87 16 26 C -0.11 -1.85 9.32 -39.58 -0.37 -2.22 16 27 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 28 C -0.14 -2.03 10.05 -39.59 -0.40 -2.42 16 29 C -0.12 -1.95 10.05 -39.59 -0.40 -2.34 16 30 C -0.11 -1.96 9.67 -39.59 -0.38 -2.34 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.40 6.76 8.62 -40.82 -0.35 6.41 16 35 H 0.39 4.84 8.62 -40.82 -0.35 4.49 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 42 H 0.38 1.81 9.08 45.56 0.41 2.23 16 43 H 0.12 1.92 7.73 -52.49 -0.41 1.51 16 44 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 45 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 46 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 47 H 0.12 2.07 8.04 -52.49 -0.42 1.65 16 LS Contribution 391.35 15.07 5.90 5.90 Total: -1.00 -33.65 391.35 -9.96 -43.61 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -6.51 Total: 14.24 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -3.76 Total: -7.28 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.20 Total: -49.39 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.76 Total: -23.13 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.65 -9.96 -43.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602278202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.659 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds