Wall clock time and date at job start Tue Mar 31 2020 23:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86799 * 120.00084 * 2 1 4 4 H 1.48500 * 109.47183 * 270.00199 * 3 2 1 5 5 H 1.48504 * 109.47103 * 29.99844 * 3 2 1 6 6 H 1.48497 * 109.47614 * 150.00048 * 3 2 1 7 7 C 1.37875 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00502 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47469 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47102 * 55.00252 * 10 9 7 12 12 N 1.46498 * 109.47358 * 295.00373 * 10 9 7 13 13 C 1.34774 * 120.00384 * 154.99763 * 12 10 9 14 14 O 1.21583 * 119.99936 * 359.97438 * 13 12 10 15 15 N 1.34776 * 120.00161 * 179.97438 * 13 12 10 16 16 C 1.46492 * 120.00129 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.62093 * 34.77903 * 16 15 13 18 18 C 1.53184 * 109.54793 * 274.55397 * 16 15 13 19 19 C 1.53085 * 109.16730 * 183.14985 * 18 16 15 20 20 O 1.42908 * 109.41265 * 57.61113 * 19 18 16 21 21 C 1.42899 * 114.09678 * 298.83890 * 20 19 18 22 22 C 1.53091 * 109.41444 * 61.16229 * 21 20 19 23 23 H 1.08998 * 109.52465 * 62.35836 * 22 21 20 24 24 O 1.42905 * 109.52393 * 182.48348 * 22 21 20 25 25 C 1.50702 * 109.47410 * 174.99706 * 10 9 7 26 26 C 1.38236 * 119.99316 * 79.73036 * 25 10 9 27 27 C 1.38247 * 119.99089 * 179.74355 * 26 25 10 28 28 C 1.38222 * 120.00019 * 0.55084 * 27 26 25 29 29 C 1.38235 * 120.00387 * 359.70164 * 28 27 26 30 30 C 1.38228 * 120.00088 * 0.02562 * 29 28 27 31 31 H 0.96999 * 120.00185 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47627 * 60.00188 * 9 7 2 33 33 H 1.09007 * 109.47168 * 299.99825 * 9 7 2 34 34 H 0.97000 * 119.99623 * 334.99319 * 12 10 9 35 35 H 0.97000 * 119.99846 * 359.97438 * 15 13 12 36 36 H 1.09007 * 109.51599 * 63.24574 * 18 16 15 37 37 H 1.09000 * 109.51666 * 303.06657 * 18 16 15 38 38 H 1.08997 * 109.48208 * 297.63192 * 19 18 16 39 39 H 1.08996 * 109.48201 * 177.58834 * 19 18 16 40 40 H 1.08991 * 109.48614 * 301.17424 * 21 20 19 41 41 H 1.09007 * 109.47757 * 181.14036 * 21 20 19 42 42 H 0.96696 * 114.00036 * 299.99764 * 24 22 21 43 43 H 1.07992 * 120.00508 * 359.97438 * 26 25 10 44 44 H 1.08003 * 119.99187 * 180.27155 * 27 26 25 45 45 H 1.08008 * 119.99821 * 179.72162 * 28 27 26 46 46 H 1.08000 * 120.00172 * 180.02562 * 29 28 27 47 47 H 1.07995 * 120.00351 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 1 2.9301 -3.5556 0.8396 12 7 3.0054 -3.6533 -1.2541 13 6 4.2300 -4.2139 -1.3031 14 8 4.7042 -4.7265 -0.3078 15 7 4.9291 -4.2063 -2.4554 16 6 6.2604 -4.8152 -2.5084 17 1 6.2901 -5.6879 -1.8560 18 6 7.3085 -3.7966 -2.0496 19 6 8.7025 -4.4150 -2.1830 20 8 8.9166 -4.8159 -3.5379 21 6 7.9953 -5.8025 -4.0068 22 6 6.5728 -5.2399 -3.9467 23 1 6.4943 -4.3767 -4.6076 24 8 5.6441 -6.2441 -4.3604 25 6 1.4960 -4.9637 0.1221 26 6 0.8888 -5.5199 -0.9883 27 6 0.2060 -6.7167 -0.8757 28 6 0.1208 -7.3512 0.3494 29 6 0.7236 -6.7923 1.4607 30 6 1.4112 -5.5985 1.3471 31 1 -0.4850 0.8400 0.0004 32 1 0.6241 -2.5568 -0.8903 33 1 0.6247 -2.5571 0.8897 34 1 2.6272 -3.2441 -2.0481 35 1 4.5506 -3.7977 -3.2496 36 1 7.1262 -3.5304 -1.0083 37 1 7.2450 -2.9035 -2.6713 38 1 8.7785 -5.2846 -1.5303 39 1 9.4551 -3.6797 -1.8984 40 1 8.0620 -6.6903 -3.3780 41 1 8.2385 -6.0668 -5.0361 42 1 5.7861 -6.5637 -5.2619 43 1 0.9510 -5.0215 -1.9443 44 1 -0.2647 -7.1535 -1.7441 45 1 -0.4165 -8.2839 0.4382 46 1 0.6574 -7.2883 2.4178 47 1 1.8818 -5.1616 2.2154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602278202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:30 Heat of formation + Delta-G solvation = -132.429939 kcal Electronic energy + Delta-G solvation = -29379.529554 eV Core-core repulsion = 25332.759138 eV Total energy + Delta-G solvation = -4046.770416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.51312 -40.56322 -39.68812 -37.56571 -36.90691 -35.72666 -34.72998 -33.09061 -31.81731 -31.56854 -30.80088 -30.41581 -26.84080 -25.55459 -24.42897 -23.79068 -23.37388 -22.19282 -21.63767 -21.22117 -19.37763 -18.64466 -18.44887 -17.98895 -17.53525 -17.23585 -16.78492 -16.53431 -16.41431 -16.04083 -15.84998 -15.53903 -15.19959 -15.13851 -14.72831 -14.48489 -14.26094 -14.18437 -14.15050 -13.75347 -13.65874 -13.42777 -13.30600 -12.93530 -12.62465 -12.55790 -12.47928 -12.39564 -12.14353 -11.87322 -11.58744 -11.46272 -11.43267 -11.33571 -11.24977 -10.59432 -10.49379 -10.28210 -9.77493 -9.71036 -9.50322 -8.20082 -6.30062 0.51959 0.56732 1.38225 1.40435 1.50775 1.77250 2.24630 2.39738 2.70507 2.95818 3.13103 3.17284 3.37774 3.61714 3.75183 3.92582 4.01423 4.04180 4.09694 4.13180 4.21144 4.28166 4.32287 4.44420 4.53064 4.65508 4.66444 4.68372 4.75995 4.79646 4.83240 4.95083 5.08499 5.13529 5.20470 5.29734 5.43250 5.53432 5.61660 5.63131 5.64967 5.78205 5.88476 6.06238 6.11553 6.16985 6.21748 6.82155 6.84098 7.17062 7.38808 7.67722 8.90728 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007866 B = 0.004244 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.877372 B = 6595.957027 C = 9270.242372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.039 3.961 10 C 0.220 3.780 11 H 0.055 0.945 12 N -0.712 5.712 13 C 0.704 3.296 14 O -0.637 6.637 15 N -0.725 5.725 16 C 0.168 3.832 17 H 0.065 0.935 18 C -0.162 4.162 19 C 0.065 3.935 20 O -0.385 6.385 21 C 0.035 3.965 22 C 0.076 3.924 23 H 0.084 0.916 24 O -0.569 6.569 25 C -0.098 4.098 26 C -0.120 4.120 27 C -0.126 4.126 28 C -0.130 4.130 29 C -0.124 4.124 30 C -0.133 4.133 31 H 0.264 0.736 32 H 0.012 0.988 33 H 0.005 0.995 34 H 0.403 0.597 35 H 0.407 0.593 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.117 0.883 40 H 0.059 0.941 41 H 0.130 0.870 42 H 0.400 0.600 43 H 0.118 0.882 44 H 0.145 0.855 45 H 0.152 0.848 46 H 0.144 0.856 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.385 -13.772 -10.666 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.070 0.930 9 C 0.001 3.999 10 C 0.114 3.886 11 H 0.073 0.927 12 N -0.364 5.364 13 C 0.404 3.596 14 O -0.519 6.519 15 N -0.380 5.380 16 C 0.063 3.937 17 H 0.083 0.917 18 C -0.201 4.201 19 C -0.012 4.012 20 O -0.304 6.304 21 C -0.042 4.042 22 C 0.016 3.984 23 H 0.101 0.899 24 O -0.378 6.378 25 C -0.099 4.099 26 C -0.138 4.138 27 C -0.144 4.144 28 C -0.148 4.148 29 C -0.142 4.142 30 C -0.152 4.152 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.023 0.977 34 H 0.238 0.762 35 H 0.242 0.758 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.135 0.865 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.251 0.749 43 H 0.136 0.864 44 H 0.163 0.837 45 H 0.169 0.831 46 H 0.162 0.838 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.572 -13.938 -9.285 20.357 hybrid contribution -0.270 1.446 -0.597 1.588 sum 11.302 -12.492 -9.882 19.530 Atomic orbital electron populations 1.70067 1.07451 1.27717 1.51349 1.25763 0.95557 1.02597 0.94791 0.85575 0.78446 0.79236 0.78522 1.19461 1.20901 1.19819 1.21365 0.92893 0.91555 1.50682 0.93007 1.19132 0.93235 0.91128 0.96388 1.19567 0.91670 0.91799 0.85575 0.92664 1.44916 1.16314 1.61180 1.14022 1.16080 0.80920 0.78805 0.83785 1.90825 1.71526 1.53477 1.36085 1.44852 1.18416 1.63508 1.11239 1.20839 0.81165 0.95272 0.96462 0.91721 1.22619 0.95394 0.99553 1.02563 1.22665 0.95633 0.99827 0.83058 1.87942 1.54147 1.59482 1.28787 1.23431 0.87169 0.90951 1.02667 1.22639 0.89753 0.92006 0.94046 0.89866 1.86613 1.55399 1.58082 1.37746 1.20503 0.98161 0.96516 0.94714 1.21037 0.98078 0.96716 0.97991 1.21429 0.99017 0.94957 0.98949 1.21459 0.99995 1.00941 0.92361 1.21384 0.97525 0.95124 1.00143 1.21175 1.00448 0.96641 0.96948 0.92718 0.96991 0.97693 0.76177 0.75750 0.91738 0.89941 0.92486 0.86497 0.92298 0.85228 0.74936 0.86439 0.83707 0.83067 0.83798 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.30 13.29 21.45 0.28 -54.01 16 2 C 0.01 0.64 5.46 84.66 0.46 1.10 16 3 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.53 -28.95 8.84 25.60 0.23 -28.72 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 9 C 0.04 1.98 4.49 29.85 0.13 2.11 16 10 C 0.22 9.75 2.11 44.25 0.09 9.85 16 11 H 0.06 2.75 7.44 -2.38 -0.02 2.73 16 12 N -0.71 -27.64 4.05 -461.41 -1.87 -29.50 16 13 C 0.70 27.13 8.49 179.06 1.52 28.65 16 14 O -0.64 -29.49 15.67 -3.98 -0.06 -29.55 16 15 N -0.73 -21.05 5.01 -457.24 -2.29 -23.35 16 16 C 0.17 4.29 2.22 45.12 0.10 4.39 16 17 H 0.06 2.04 7.58 -2.39 -0.02 2.02 16 18 C -0.16 -3.80 5.72 30.68 0.18 -3.63 16 19 C 0.07 1.21 6.84 72.01 0.49 1.71 16 20 O -0.38 -7.08 10.77 -148.98 -1.60 -8.68 16 21 C 0.04 0.51 6.47 72.01 0.47 0.97 16 22 C 0.08 1.31 3.17 30.69 0.10 1.40 16 23 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 24 O -0.57 -9.89 13.25 -148.98 -1.97 -11.86 16 25 C -0.10 -3.92 4.91 -19.86 -0.10 -4.01 16 26 C -0.12 -4.24 9.32 22.27 0.21 -4.03 16 27 C -0.13 -3.67 10.05 22.27 0.22 -3.44 16 28 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 29 C -0.12 -3.74 10.05 22.27 0.22 -3.52 16 30 C -0.13 -5.00 9.67 22.27 0.22 -4.78 16 31 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 34 H 0.40 14.23 8.62 -92.71 -0.80 13.43 16 35 H 0.41 9.73 8.62 -92.71 -0.80 8.94 16 36 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.40 2.71 9.08 -74.06 -0.67 2.04 16 43 H 0.12 3.95 7.73 -2.91 -0.02 3.93 16 44 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 45 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 46 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 47 H 0.11 4.19 8.04 -2.91 -0.02 4.17 16 Total: -1.00 -75.29 391.35 -1.99 -77.28 By element: Atomic # 1 Polarization: 40.50 SS G_CDS: -1.27 Total: 39.23 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 4.76 Total: -5.23 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -3.87 Total: -106.86 kcal Atomic # 8 Polarization: -46.45 SS G_CDS: -3.64 Total: -50.09 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -75.29 -1.99 -77.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602278202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.149 kcal (2) G-P(sol) polarization free energy of solvation -75.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds