Wall clock time and date at job start Tue Mar 31 2020 23:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86795 * 119.99743 * 2 1 4 4 H 1.48503 * 109.47101 * 269.99512 * 3 2 1 5 5 H 1.48504 * 109.47557 * 29.99309 * 3 2 1 6 6 H 1.48503 * 109.47128 * 149.99583 * 3 2 1 7 7 C 1.39887 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00046 * 197.93795 * 7 2 1 9 9 C 1.41220 * 120.00150 * 17.93998 * 7 2 1 10 10 C 1.40835 * 120.17651 * 24.54856 * 9 7 2 11 11 C 1.36435 * 119.80794 * 180.02562 * 10 9 7 12 12 C 1.39313 * 120.18827 * 359.97438 * 11 10 9 13 13 O 1.35668 * 119.81719 * 179.97438 * 12 11 10 14 14 C 1.42909 * 116.99971 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47137 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.47200 * 304.99188 * 15 14 13 17 17 O 1.42896 * 109.47515 * 64.99713 * 15 14 13 18 18 C 1.53001 * 109.46940 * 184.99794 * 15 14 13 19 19 N 1.46900 * 109.47002 * 179.97438 * 18 15 14 20 20 C 1.45759 * 110.99827 * 170.00085 * 19 18 15 21 21 C 1.51685 * 113.93501 * 192.72551 * 20 19 18 22 22 C 1.53113 * 110.75985 * 293.22311 * 21 20 19 23 23 N 1.47245 * 108.40056 * 85.59483 * 22 21 20 24 24 C 1.33613 * 119.84471 * 290.01960 * 23 22 21 25 25 O 1.21281 * 119.88559 * 179.47612 * 24 23 22 26 26 C 1.46874 * 111.00091 * 295.81540 * 19 18 15 27 27 C 1.39317 * 120.36261 * 0.25701 * 12 11 10 28 28 C 1.36434 * 120.18371 * 359.48700 * 27 12 11 29 29 H 0.96999 * 120.00095 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.09416 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.90587 * 179.97438 * 11 10 9 32 32 H 1.08994 * 109.47250 * 59.99059 * 14 13 12 33 33 H 1.09004 * 109.46815 * 299.99556 * 14 13 12 34 34 H 0.96701 * 114.00229 * 60.00121 * 17 15 14 35 35 H 1.08998 * 109.47417 * 299.99621 * 18 15 14 36 36 H 1.08996 * 109.47307 * 59.99693 * 18 15 14 37 37 H 1.09006 * 108.59039 * 313.87375 * 20 19 18 38 38 H 1.08998 * 108.59366 * 71.71890 * 20 19 18 39 39 H 1.08994 * 109.22513 * 53.55588 * 21 20 19 40 40 H 1.09004 * 109.21678 * 172.93588 * 21 20 19 41 41 H 1.08992 * 109.67919 * 205.32358 * 22 21 20 42 42 H 1.09003 * 109.67312 * 325.86704 * 22 21 20 43 43 H 0.96996 * 120.07581 * 109.99792 * 23 22 21 44 44 H 1.09001 * 109.60762 * 268.97077 * 26 19 18 45 45 H 1.09005 * 109.60353 * 29.45036 * 26 19 18 46 46 H 1.08002 * 119.90692 * 179.72232 * 27 12 11 47 47 H 1.07996 * 120.09402 * 180.25499 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4401 2.6528 0.6999 6 1 3.5402 1.4402 0.7001 7 6 2.0082 -1.2115 0.0005 8 1 3.0489 -1.2341 0.2886 9 6 1.3536 -2.4049 -0.3756 10 6 0.2247 -2.3584 -1.2163 11 6 -0.4023 -3.5160 -1.5746 12 6 0.0716 -4.7416 -1.1118 13 8 -0.5579 -5.8880 -1.4723 14 6 -0.0214 -7.1106 -0.9628 15 6 -0.8566 -8.2862 -1.4738 16 1 -1.9032 -8.1289 -1.2129 17 8 -0.7285 -8.3800 -2.8939 18 6 -0.3601 -9.5824 -0.8302 19 7 -1.1625 -10.7111 -1.3204 20 6 -0.5758 -11.9831 -0.9172 21 6 -1.1635 -13.1856 -1.6309 22 6 -2.6262 -13.3938 -1.2291 23 7 -3.4699 -12.5504 -2.0922 24 6 -3.4461 -11.2219 -1.9517 25 8 -4.1336 -10.5260 -2.6686 26 6 -2.5640 -10.5822 -0.9005 27 6 1.1849 -4.7959 -0.2759 28 6 1.8265 -3.6480 0.0875 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1442 -1.4091 -1.5756 31 1 -1.2684 -3.4822 -2.2188 32 1 -0.0470 -7.0925 0.1267 33 1 1.0090 -7.2237 -1.3001 34 1 0.1784 -8.5206 -3.1986 35 1 0.6865 -9.7399 -1.0910 36 1 -0.4578 -9.5110 0.2530 37 1 0.4954 -11.9502 -1.1160 38 1 -0.7255 -12.1105 0.1549 39 1 -1.1063 -13.0271 -2.7078 40 1 -0.5898 -14.0744 -1.3683 41 1 -2.8975 -14.4411 -1.3611 42 1 -2.7649 -13.1067 -0.1868 43 1 -4.0414 -12.9583 -2.7614 44 1 -2.7078 -11.0877 0.0544 45 1 -2.8203 -9.5274 -0.8007 46 1 1.5434 -5.7497 0.0822 47 1 2.6918 -3.6922 0.7322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726846130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:22 Heat of formation + Delta-G solvation = -92.174233 kcal Electronic energy + Delta-G solvation = -28257.184632 eV Core-core repulsion = 24212.159835 eV Total energy + Delta-G solvation = -4045.024798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.54986 -39.05265 -38.07303 -36.97921 -36.05345 -35.16643 -33.29906 -32.07999 -30.63848 -29.62084 -28.99856 -28.04386 -26.50403 -24.86197 -24.05829 -21.88468 -21.46231 -20.68452 -20.54982 -20.11791 -17.66655 -17.43269 -17.33635 -17.07396 -16.43758 -16.13949 -15.68993 -15.52713 -15.17501 -14.65940 -14.41382 -14.27467 -14.00389 -13.92767 -13.83206 -13.57154 -13.37608 -12.83570 -12.66748 -12.30967 -12.21168 -12.12165 -11.95112 -11.68969 -11.63427 -11.46924 -11.36811 -11.13685 -10.90565 -10.72481 -10.59876 -10.15890 -9.98140 -9.86919 -9.80761 -9.41278 -9.31364 -9.01049 -8.68653 -7.62750 -7.01661 -6.70734 -4.24171 2.34034 2.79234 2.96547 3.02460 3.09696 3.12808 3.22875 3.34862 3.96004 3.99912 4.26449 4.28265 4.39830 4.46641 4.58762 4.63614 4.80622 4.82943 4.90858 4.94462 5.04828 5.14121 5.19393 5.25670 5.31844 5.37195 5.41738 5.61230 5.68572 5.72852 6.01921 6.06510 6.24575 6.45708 6.50728 6.65627 6.75461 6.98238 6.99072 7.12650 7.20090 7.48251 7.57341 7.80107 7.82026 8.02216 8.06441 8.22139 8.47185 8.67124 8.91348 9.00355 10.23675 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.034089 B = 0.001901 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.188292 B =14726.367147 C =15201.903064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.087 3.913 10 C -0.133 4.133 11 C -0.119 4.119 12 C -0.008 4.008 13 O -0.316 6.316 14 C 0.039 3.961 15 C 0.112 3.888 16 H 0.106 0.894 17 O -0.533 6.533 18 C 0.032 3.968 19 N -0.526 5.526 20 C 0.057 3.943 21 C -0.141 4.141 22 C 0.107 3.893 23 N -0.728 5.728 24 C 0.532 3.468 25 O -0.536 6.536 26 C 0.036 3.964 27 C -0.168 4.168 28 C -0.199 4.199 29 H 0.280 0.720 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.368 0.632 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.400 0.600 44 H 0.063 0.937 45 H 0.109 0.891 46 H 0.092 0.908 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 -25.985 0.921 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.085 3.915 10 C -0.152 4.152 11 C -0.138 4.138 12 C -0.051 4.051 13 O -0.231 6.231 14 C -0.038 4.038 15 C 0.052 3.948 16 H 0.123 0.877 17 O -0.337 6.337 18 C -0.096 4.096 19 N -0.252 5.252 20 C -0.071 4.071 21 C -0.180 4.180 22 C -0.017 4.017 23 N -0.382 5.382 24 C 0.317 3.683 25 O -0.410 6.410 26 C -0.095 4.095 27 C -0.187 4.187 28 C -0.219 4.219 29 H 0.091 0.909 30 H 0.144 0.856 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.214 0.786 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.236 0.764 44 H 0.081 0.919 45 H 0.127 0.873 46 H 0.110 0.890 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.650 -25.263 0.129 25.402 hybrid contribution 1.070 0.303 1.039 1.522 sum -1.580 -24.961 1.169 25.038 Atomic orbital electron populations 1.69834 1.07494 1.29139 1.35991 1.25881 0.94727 1.01227 0.92416 0.86323 0.80413 0.80737 0.79271 1.19320 1.20403 1.18746 1.19459 0.98083 0.91231 1.40602 0.90567 1.17602 0.91877 0.92119 0.89886 1.20991 0.98462 0.96327 0.99461 1.19860 1.00841 0.90230 1.02828 1.18628 0.96992 0.84848 1.04673 1.85908 1.54414 1.11969 1.70831 1.23094 0.97115 0.85292 0.98341 1.21939 1.00851 0.89847 0.82157 0.87681 1.86711 1.32404 1.95110 1.19442 1.22737 0.98021 0.90736 0.98097 1.60590 1.00502 1.02061 1.62054 1.21678 0.99598 0.88613 0.97213 1.21897 0.95735 0.97604 1.02764 1.21796 0.90168 0.95264 0.94520 1.45997 1.45965 1.06704 1.39493 1.20390 0.81675 0.81977 0.84274 1.90785 1.43381 1.61863 1.45013 1.22516 0.88430 1.03176 0.95336 1.20380 0.98051 0.97689 1.02613 1.20544 1.03120 0.92547 1.05669 0.90911 0.85648 0.88373 0.92565 0.92862 0.78554 0.89469 0.93107 0.90275 0.94825 0.89969 0.89861 0.89390 0.90999 0.76396 0.91906 0.87260 0.88997 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.91 10.96 55.54 0.61 -20.30 16 2 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 3 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.39 9.04 -37.83 -0.34 -12.73 16 8 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 9 C 0.09 2.36 5.57 -106.80 -0.60 1.76 16 10 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 11 C -0.12 -2.96 9.92 -39.83 -0.40 -3.35 16 12 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16 13 O -0.32 -6.62 10.09 -23.55 -0.24 -6.85 16 14 C 0.04 0.59 4.37 37.16 0.16 0.75 16 15 C 0.11 1.45 3.15 -26.73 -0.08 1.36 16 16 H 0.11 1.51 6.16 -51.93 -0.32 1.19 16 17 O -0.53 -7.87 13.17 -40.08 -0.53 -8.39 16 18 C 0.03 0.28 4.60 -3.82 -0.02 0.27 16 19 N -0.53 -4.71 4.25 -237.46 -1.01 -5.72 16 20 C 0.06 0.34 4.93 -5.11 -0.03 0.31 16 21 C -0.14 -0.65 5.86 -27.34 -0.16 -0.81 16 22 C 0.11 0.45 6.50 -3.58 -0.02 0.43 16 23 N -0.73 -5.62 5.33 -59.75 -0.32 -5.94 16 24 C 0.53 6.26 7.46 -11.16 -0.08 6.18 16 25 O -0.54 -9.06 17.92 5.56 0.10 -8.96 16 26 C 0.04 0.35 5.09 -4.64 -0.02 0.33 16 27 C -0.17 -3.80 8.96 -39.83 -0.36 -4.16 16 28 C -0.20 -4.90 9.74 -39.25 -0.38 -5.29 16 29 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 30 H 0.13 3.41 6.16 -52.49 -0.32 3.08 16 31 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 32 H 0.06 0.80 7.63 -51.93 -0.40 0.41 16 33 H 0.05 0.75 7.66 -51.93 -0.40 0.35 16 34 H 0.37 4.09 9.05 45.56 0.41 4.50 16 35 H 0.09 0.65 7.84 -51.93 -0.41 0.25 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.42 7.79 -51.93 -0.40 0.02 16 38 H 0.03 0.17 7.77 -51.93 -0.40 -0.24 16 39 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 40 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.07 0.27 6.76 -51.93 -0.35 -0.08 16 43 H 0.40 2.74 8.92 -40.82 -0.36 2.38 16 44 H 0.06 0.45 6.66 -51.93 -0.35 0.10 16 45 H 0.11 1.23 5.69 -51.93 -0.30 0.93 16 46 H 0.09 1.76 6.27 -52.49 -0.33 1.43 16 47 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -34.31 377.46 -9.75 -44.06 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.01 Total: 10.07 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -3.02 Total: -17.48 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: -0.72 Total: -31.95 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.67 Total: -24.21 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.31 -9.75 -44.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726846130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.118 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds