Wall clock time and date at job start Tue Mar 31 2020 23:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86795 * 119.99743 * 2 1 4 4 H 1.48503 * 109.47101 * 269.99512 * 3 2 1 5 5 H 1.48504 * 109.47557 * 29.99309 * 3 2 1 6 6 H 1.48503 * 109.47128 * 149.99583 * 3 2 1 7 7 C 1.39887 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00046 * 197.93795 * 7 2 1 9 9 C 1.41220 * 120.00150 * 17.93998 * 7 2 1 10 10 C 1.40835 * 120.17651 * 24.54856 * 9 7 2 11 11 C 1.36435 * 119.80794 * 180.02562 * 10 9 7 12 12 C 1.39313 * 120.18827 * 359.97438 * 11 10 9 13 13 O 1.35668 * 119.81719 * 179.97438 * 12 11 10 14 14 C 1.42909 * 116.99971 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47137 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.47200 * 304.99188 * 15 14 13 17 17 O 1.42896 * 109.47515 * 64.99713 * 15 14 13 18 18 C 1.53001 * 109.46940 * 184.99794 * 15 14 13 19 19 N 1.46900 * 109.47002 * 179.97438 * 18 15 14 20 20 C 1.45759 * 110.99827 * 170.00085 * 19 18 15 21 21 C 1.51685 * 113.93501 * 192.72551 * 20 19 18 22 22 C 1.53113 * 110.75985 * 293.22311 * 21 20 19 23 23 N 1.47245 * 108.40056 * 85.59483 * 22 21 20 24 24 C 1.33613 * 119.84471 * 290.01960 * 23 22 21 25 25 O 1.21281 * 119.88559 * 179.47612 * 24 23 22 26 26 C 1.46874 * 111.00091 * 295.81540 * 19 18 15 27 27 C 1.39317 * 120.36261 * 0.25701 * 12 11 10 28 28 C 1.36434 * 120.18371 * 359.48700 * 27 12 11 29 29 H 0.96999 * 120.00095 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.09416 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.90587 * 179.97438 * 11 10 9 32 32 H 1.08994 * 109.47250 * 59.99059 * 14 13 12 33 33 H 1.09004 * 109.46815 * 299.99556 * 14 13 12 34 34 H 0.96701 * 114.00229 * 60.00121 * 17 15 14 35 35 H 1.08998 * 109.47417 * 299.99621 * 18 15 14 36 36 H 1.08996 * 109.47307 * 59.99693 * 18 15 14 37 37 H 1.09006 * 108.59039 * 313.87375 * 20 19 18 38 38 H 1.08998 * 108.59366 * 71.71890 * 20 19 18 39 39 H 1.08994 * 109.22513 * 53.55588 * 21 20 19 40 40 H 1.09004 * 109.21678 * 172.93588 * 21 20 19 41 41 H 1.08992 * 109.67919 * 205.32358 * 22 21 20 42 42 H 1.09003 * 109.67312 * 325.86704 * 22 21 20 43 43 H 0.96996 * 120.07581 * 109.99792 * 23 22 21 44 44 H 1.09001 * 109.60762 * 268.97077 * 26 19 18 45 45 H 1.09005 * 109.60353 * 29.45036 * 26 19 18 46 46 H 1.08002 * 119.90692 * 179.72232 * 27 12 11 47 47 H 1.07996 * 120.09402 * 180.25499 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4401 2.6528 0.6999 6 1 3.5402 1.4402 0.7001 7 6 2.0082 -1.2115 0.0005 8 1 3.0489 -1.2341 0.2886 9 6 1.3536 -2.4049 -0.3756 10 6 0.2247 -2.3584 -1.2163 11 6 -0.4023 -3.5160 -1.5746 12 6 0.0716 -4.7416 -1.1118 13 8 -0.5579 -5.8880 -1.4723 14 6 -0.0214 -7.1106 -0.9628 15 6 -0.8566 -8.2862 -1.4738 16 1 -1.9032 -8.1289 -1.2129 17 8 -0.7285 -8.3800 -2.8939 18 6 -0.3601 -9.5824 -0.8302 19 7 -1.1625 -10.7111 -1.3204 20 6 -0.5758 -11.9831 -0.9172 21 6 -1.1635 -13.1856 -1.6309 22 6 -2.6262 -13.3938 -1.2291 23 7 -3.4699 -12.5504 -2.0922 24 6 -3.4461 -11.2219 -1.9517 25 8 -4.1336 -10.5260 -2.6686 26 6 -2.5640 -10.5822 -0.9005 27 6 1.1849 -4.7959 -0.2759 28 6 1.8265 -3.6480 0.0875 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1442 -1.4091 -1.5756 31 1 -1.2684 -3.4822 -2.2188 32 1 -0.0470 -7.0925 0.1267 33 1 1.0090 -7.2237 -1.3001 34 1 0.1784 -8.5206 -3.1986 35 1 0.6865 -9.7399 -1.0910 36 1 -0.4578 -9.5110 0.2530 37 1 0.4954 -11.9502 -1.1160 38 1 -0.7255 -12.1105 0.1549 39 1 -1.1063 -13.0271 -2.7078 40 1 -0.5898 -14.0744 -1.3683 41 1 -2.8975 -14.4411 -1.3611 42 1 -2.7649 -13.1067 -0.1868 43 1 -4.0414 -12.9583 -2.7614 44 1 -2.7078 -11.0877 0.0544 45 1 -2.8203 -9.5274 -0.8007 46 1 1.5434 -5.7497 0.0822 47 1 2.6918 -3.6922 0.7322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726846130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:21 Heat of formation + Delta-G solvation = -119.506153 kcal Electronic energy + Delta-G solvation = -28258.369833 eV Core-core repulsion = 24212.159835 eV Total energy + Delta-G solvation = -4046.209999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.30503 -40.60182 -39.20426 -38.20110 -37.39819 -35.95032 -35.17709 -32.74612 -31.96153 -31.23522 -30.79477 -28.85318 -27.35138 -26.50508 -25.05266 -23.15511 -22.45817 -22.23072 -21.80935 -20.85557 -19.25434 -18.79028 -18.31177 -18.04535 -17.60657 -17.24406 -17.04672 -16.43614 -16.31215 -15.83482 -15.70506 -15.61936 -15.16108 -14.89902 -14.80447 -14.56176 -14.28639 -14.06853 -14.05234 -13.90371 -13.58466 -13.37294 -13.02236 -12.96169 -12.80755 -12.59372 -12.51143 -12.37234 -12.07415 -11.87575 -11.84206 -11.64495 -11.58164 -11.20397 -11.05339 -10.92337 -10.87447 -10.09172 -9.56307 -9.30034 -8.92512 -8.59317 -6.22587 0.94837 1.02788 1.39733 1.51452 1.52983 1.53182 2.22714 2.37149 2.40834 2.72729 2.99659 3.53984 3.60485 3.70353 3.76737 3.91382 3.96451 3.99552 4.06249 4.09697 4.28944 4.33137 4.37036 4.43423 4.46715 4.50536 4.60461 4.64167 4.75182 4.86533 4.94775 4.99546 5.04965 5.07891 5.21894 5.28532 5.36212 5.59259 5.64162 5.81914 5.88453 5.89405 6.06060 6.09221 6.26227 6.28513 6.57079 6.81384 6.92061 6.95224 7.11194 7.26841 8.37249 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.034089 B = 0.001901 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.188292 B =14726.367147 C =15201.903064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.031 3.969 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.498 4.498 8 H 0.078 0.922 9 C 0.053 3.947 10 C -0.153 4.153 11 C -0.138 4.138 12 C 0.001 3.999 13 O -0.335 6.335 14 C 0.031 3.969 15 C 0.117 3.883 16 H 0.083 0.917 17 O -0.561 6.561 18 C 0.044 3.956 19 N -0.543 5.543 20 C 0.051 3.949 21 C -0.137 4.137 22 C 0.101 3.899 23 N -0.716 5.716 24 C 0.523 3.477 25 O -0.604 6.604 26 C 0.039 3.961 27 C -0.162 4.162 28 C -0.206 4.206 29 H 0.287 0.713 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.382 0.618 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.403 0.597 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.134 0.866 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.481 -28.711 2.452 28.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.183 4.183 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.527 4.527 8 H 0.096 0.904 9 C 0.051 3.949 10 C -0.173 4.173 11 C -0.157 4.157 12 C -0.043 4.043 13 O -0.251 6.251 14 C -0.045 4.045 15 C 0.057 3.943 16 H 0.101 0.899 17 O -0.367 6.367 18 C -0.084 4.084 19 N -0.269 5.269 20 C -0.076 4.076 21 C -0.176 4.176 22 C -0.021 4.021 23 N -0.367 5.367 24 C 0.309 3.691 25 O -0.484 6.484 26 C -0.091 4.091 27 C -0.181 4.181 28 C -0.225 4.225 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.231 0.769 35 H 0.127 0.873 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.103 0.897 43 H 0.239 0.761 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.151 0.849 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.739 -28.081 1.684 28.141 hybrid contribution 0.439 0.884 0.541 1.125 sum -0.301 -27.197 2.225 27.290 Atomic orbital electron populations 1.69900 1.09045 1.30440 1.36577 1.26774 0.95485 1.04621 0.91399 0.85183 0.79077 0.75910 0.79389 1.18907 1.19465 1.17979 1.19718 0.98397 0.92313 1.42311 0.90382 1.17969 0.92581 0.93544 0.90766 1.20891 0.99465 0.96248 1.00698 1.20011 1.01218 0.90968 1.03455 1.18696 0.96716 0.85364 1.03550 1.85903 1.54994 1.12953 1.71289 1.23504 0.98385 0.83316 0.99327 1.21931 0.99541 0.91205 0.81649 0.89946 1.86677 1.33932 1.95282 1.20779 1.22602 0.98724 0.88479 0.98583 1.60514 1.00003 1.03438 1.62958 1.21839 0.99996 0.87285 0.98436 1.21898 0.96145 0.98344 1.01188 1.22149 0.89447 0.96166 0.94377 1.46073 1.45506 1.05855 1.39307 1.20875 0.81178 0.82991 0.84039 1.90745 1.46274 1.63697 1.47729 1.22404 0.88824 1.02006 0.95901 1.20706 0.97057 0.98852 1.01482 1.20822 1.03636 0.92461 1.05622 0.90270 0.87410 0.88056 0.90999 0.90980 0.76936 0.87286 0.91278 0.89286 0.92931 0.92224 0.86852 0.86378 0.89741 0.76106 0.88894 0.89582 0.84867 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.94 10.96 21.82 0.24 -44.70 16 2 C 0.03 1.59 5.13 85.23 0.44 2.03 16 3 Si 0.98 38.95 29.59 68.60 2.03 40.98 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.50 -27.17 9.04 23.40 0.21 -26.96 16 8 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 9 C 0.05 2.96 5.57 -21.28 -0.12 2.84 16 10 C -0.15 -8.50 8.64 22.48 0.19 -8.31 16 11 C -0.14 -7.07 9.92 22.11 0.22 -6.85 16 12 C 0.00 0.03 6.71 22.79 0.15 0.18 16 13 O -0.34 -13.87 10.09 -85.21 -0.86 -14.73 16 14 C 0.03 0.87 4.37 71.98 0.31 1.18 16 15 C 0.12 2.88 3.15 30.59 0.10 2.98 16 16 H 0.08 2.42 6.16 -2.39 -0.01 2.40 16 17 O -0.56 -16.36 13.17 -144.35 -1.90 -18.26 16 18 C 0.04 0.65 4.60 86.30 0.40 1.05 16 19 N -0.54 -8.47 4.25 -905.19 -3.84 -12.31 16 20 C 0.05 0.41 4.93 86.09 0.42 0.83 16 21 C -0.14 -0.78 5.86 30.20 0.18 -0.60 16 22 C 0.10 0.52 6.50 86.27 0.56 1.08 16 23 N -0.72 -10.17 5.33 -461.99 -2.46 -12.63 16 24 C 0.52 12.37 7.46 88.06 0.66 13.03 16 25 O -0.60 -21.63 17.92 -3.03 -0.05 -21.69 16 26 C 0.04 0.72 5.09 85.79 0.44 1.16 16 27 C -0.16 -7.06 8.96 22.11 0.20 -6.86 16 28 C -0.21 -10.04 9.74 22.48 0.22 -9.82 16 29 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 30 H 0.11 6.22 6.16 -2.91 -0.02 6.20 16 31 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 32 H 0.07 1.83 7.63 -2.39 -0.02 1.81 16 33 H 0.07 1.78 7.66 -2.39 -0.02 1.77 16 34 H 0.38 8.08 9.05 -74.06 -0.67 7.41 16 35 H 0.11 1.18 7.84 -2.39 -0.02 1.16 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 0.57 7.79 -2.38 -0.02 0.55 16 38 H 0.05 0.26 7.77 -2.39 -0.02 0.24 16 39 H 0.06 0.65 8.05 -2.39 -0.02 0.63 16 40 H 0.11 0.02 8.14 -2.38 -0.02 0.00 16 41 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.08 0.28 6.76 -2.39 -0.02 0.27 16 43 H 0.40 5.25 8.92 -92.71 -0.83 4.42 16 44 H 0.09 1.07 6.66 -2.39 -0.02 1.06 16 45 H 0.09 1.99 5.69 -2.38 -0.01 1.97 16 46 H 0.13 4.60 6.27 -2.91 -0.02 4.58 16 47 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -79.39 377.46 -2.75 -82.14 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -0.48 Total: 34.23 kcal Atomic # 6 Polarization: -37.62 SS G_CDS: 4.58 Total: -33.04 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -6.06 Total: -69.64 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -2.81 Total: -54.67 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -79.39 -2.75 -82.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726846130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.363 kcal (2) G-P(sol) polarization free energy of solvation -79.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds