Wall clock time and date at job start Tue Mar 31 2020 23:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46539 * 198.26420 * 3 2 1 5 5 N 1.46501 * 109.46894 * 180.02562 * 4 3 2 6 6 C 1.46501 * 120.00258 * 270.00227 * 5 4 3 7 7 C 1.50701 * 109.46913 * 270.00250 * 6 5 4 8 8 H 1.07997 * 120.00184 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00069 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99961 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00363 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47405 * 89.99466 * 11 9 7 13 13 H 1.48495 * 109.47637 * 209.99937 * 11 9 7 14 14 H 1.48506 * 109.47210 * 330.00023 * 11 9 7 15 15 C 1.34774 * 120.00014 * 90.00262 * 5 4 3 16 16 O 1.21286 * 120.00187 * 180.02562 * 15 5 4 17 17 C 1.50701 * 120.00060 * 359.97438 * 15 5 4 18 18 O 1.45202 * 109.47450 * 180.02562 * 17 15 5 19 19 C 1.34230 * 117.00207 * 179.97438 * 18 17 15 20 20 O 1.20820 * 120.00012 * 359.97438 * 19 18 17 21 21 C 1.50698 * 119.99809 * 179.97438 * 19 18 17 22 22 C 1.50701 * 109.47031 * 179.97438 * 21 19 18 23 23 C 1.29445 * 117.95895 * 94.73363 * 22 21 19 24 24 C 1.50074 * 124.07477 * 180.75080 * 23 22 21 25 25 C 1.53016 * 110.14671 * 342.87319 * 24 23 22 26 26 C 1.53391 * 108.44058 * 49.43435 * 25 24 23 27 27 C 1.50066 * 117.96583 * 275.00349 * 22 21 19 28 28 H 1.09002 * 109.47214 * 78.27129 * 3 2 1 29 29 H 1.08998 * 109.47779 * 318.26174 * 3 2 1 30 30 H 1.08998 * 109.47659 * 60.00298 * 4 3 2 31 31 H 1.09000 * 109.47491 * 299.99854 * 4 3 2 32 32 H 1.08998 * 109.46765 * 29.99330 * 6 5 4 33 33 H 1.08999 * 109.47427 * 150.00095 * 6 5 4 34 34 H 0.97001 * 120.00351 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.47154 * 60.00189 * 17 15 5 36 36 H 1.09006 * 109.46806 * 300.00140 * 17 15 5 37 37 H 1.08999 * 109.47012 * 59.99823 * 21 19 18 38 38 H 1.08997 * 109.47081 * 300.00004 * 21 19 18 39 39 H 1.07999 * 117.96176 * 0.73020 * 23 22 21 40 40 H 1.09002 * 109.35609 * 222.66402 * 24 23 22 41 41 H 1.09003 * 109.35439 * 103.08085 * 24 23 22 42 42 H 1.09003 * 109.64533 * 289.75036 * 25 24 23 43 43 H 1.09000 * 109.64519 * 169.11862 * 25 24 23 44 44 H 1.09001 * 109.64689 * 172.88318 * 26 25 24 45 45 H 1.09003 * 109.64136 * 52.25083 * 26 25 24 46 46 H 1.09003 * 109.35468 * 282.79297 * 27 22 21 47 47 H 1.08998 * 109.35916 * 42.51411 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1173 1.3708 0.4521 5 7 4.5823 1.3717 0.4515 6 6 5.3156 0.9743 1.6560 7 6 5.5662 2.1873 2.5145 8 1 5.2149 3.1571 2.1947 9 6 6.2451 2.0590 3.7077 10 7 6.6734 0.8780 4.0969 11 14 6.5564 3.5625 4.7716 12 1 5.4270 3.7409 5.7192 13 1 7.8174 3.3773 5.5336 14 1 6.6722 4.7648 3.9077 15 6 5.2555 1.7382 -0.6570 16 8 6.4684 1.7385 -0.6577 17 6 4.5013 2.1464 -1.8962 18 8 5.4442 2.4926 -2.9447 19 6 4.9304 2.8802 -4.1227 20 8 3.7326 2.9281 -4.2729 21 6 5.8478 3.2556 -5.2578 22 6 5.0263 3.6495 -6.4583 23 6 4.7728 4.9067 -6.6341 24 6 3.9566 5.4489 -7.7708 25 6 3.8403 4.4032 -8.8819 26 6 3.4068 3.0730 -8.2528 27 6 4.5479 2.5595 -7.3721 28 1 2.9715 -0.2081 -1.0062 29 1 2.9718 -0.7660 0.6841 30 1 2.7539 1.5797 1.4583 31 1 2.7536 2.1375 -0.2320 32 1 4.7271 0.2479 2.2164 33 1 6.2682 0.5279 1.3707 34 1 7.1506 0.7876 4.9365 35 1 3.8739 3.0090 -1.6720 36 1 3.8754 1.3186 -2.2297 37 1 6.4777 2.4034 -5.5129 38 1 6.4755 4.0939 -4.9557 39 1 5.1733 5.6090 -5.9181 40 1 4.4372 6.3439 -8.1659 41 1 2.9605 5.7053 -7.4102 42 1 4.8064 4.2793 -9.3712 43 1 3.0956 4.7238 -9.6104 44 1 3.1956 2.3476 -9.0385 45 1 2.5158 3.2286 -7.6444 46 1 5.3725 2.2304 -8.0045 47 1 4.1918 1.7190 -6.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730335841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:20 Heat of formation + Delta-G solvation = -93.870633 kcal Electronic energy + Delta-G solvation = -28112.401284 eV Core-core repulsion = 24067.302925 eV Total energy + Delta-G solvation = -4045.098359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -40.72865 -39.34444 -38.64526 -36.92636 -36.33103 -35.28312 -33.30221 -32.95400 -31.03741 -30.92741 -29.61532 -27.92459 -26.53069 -24.11050 -23.61137 -22.97915 -22.22707 -20.85463 -18.89553 -18.01414 -17.77886 -17.63622 -16.76753 -16.69924 -16.46288 -16.07896 -15.84121 -15.26420 -14.85811 -14.73887 -14.58215 -14.23638 -14.03885 -13.93992 -13.65728 -13.25158 -12.98653 -12.85706 -12.69354 -12.49367 -12.48093 -12.44141 -12.23369 -12.11403 -11.95682 -11.78522 -11.34246 -11.07743 -11.06392 -10.99032 -10.77124 -10.70241 -10.64720 -10.60401 -10.51279 -10.23729 -9.77241 -9.17771 -9.06890 -8.51634 -7.97748 -6.13396 -4.18327 1.77330 2.13991 2.59267 2.71860 2.79674 3.10637 3.26296 3.33738 3.37728 3.62882 4.12238 4.23904 4.37993 4.38698 4.63812 4.72932 4.79817 4.84031 4.90513 4.98054 5.00719 5.06915 5.12539 5.15810 5.18628 5.22554 5.29653 5.30543 5.36799 5.42277 5.54680 5.63643 5.67840 5.74962 5.76806 5.88101 5.99675 6.05723 6.27572 6.39225 6.69714 6.82175 7.25060 7.32906 7.55459 7.68667 7.82394 8.08246 8.11486 8.70526 8.87805 9.47386 10.94787 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012371 B = 0.002536 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.802946 B =11036.770229 C =12498.448448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.113 3.887 5 N -0.592 5.592 6 C 0.246 3.754 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.509 3.491 16 O -0.509 6.509 17 C 0.046 3.954 18 O -0.330 6.330 19 C 0.461 3.539 20 O -0.504 6.504 21 C -0.081 4.081 22 C -0.111 4.111 23 C -0.138 4.138 24 C -0.089 4.089 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.080 4.080 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.264 0.736 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.556 3.355 -22.544 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.014 4.014 5 N -0.325 5.325 6 C 0.128 3.872 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.726 3.274 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.294 3.706 16 O -0.384 6.384 17 C -0.031 4.031 18 O -0.245 6.245 19 C 0.304 3.696 20 O -0.392 6.392 21 C -0.119 4.119 22 C -0.111 4.111 23 C -0.157 4.157 24 C -0.126 4.126 25 C -0.158 4.158 26 C -0.157 4.157 27 C -0.117 4.117 28 H 0.123 0.877 29 H 0.138 0.862 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.122 0.878 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.826 3.257 -22.376 23.350 hybrid contribution 0.433 0.788 0.932 1.295 sum -5.393 4.046 -21.443 22.478 Atomic orbital electron populations 1.81212 1.13005 1.08563 1.09155 1.29039 0.95048 0.93208 0.92921 1.19889 0.81533 1.02362 1.05447 1.21397 0.81941 0.93795 1.04231 1.48163 1.04993 1.65826 1.13566 1.19421 0.92675 0.95984 0.79137 1.21400 1.36936 0.94410 1.04258 0.92297 1.24913 0.95192 0.96175 0.97653 1.69913 1.38097 1.22521 1.22597 0.86498 0.77735 0.82980 0.80235 1.20619 1.21061 1.19854 1.19758 0.88184 0.79130 0.83573 1.90741 1.13288 1.51327 1.83010 1.22963 0.91298 1.02396 0.86449 1.86578 1.40085 1.76729 1.21153 1.23739 0.88893 0.73760 0.83244 1.90669 1.16752 1.49215 1.82574 1.20512 0.96946 1.04998 0.89420 1.20315 0.99925 0.95165 0.95676 1.21969 0.99126 0.95700 0.98858 1.20433 0.99722 0.98285 0.94171 1.21610 1.01530 0.95292 0.97378 1.21582 0.98418 0.96870 0.98781 1.20358 0.98089 0.96571 0.96704 0.87675 0.86202 0.88195 0.90659 0.94309 0.93330 0.92589 0.88583 0.88782 0.86904 0.86994 0.87794 0.91066 0.90683 0.91736 0.91776 0.91710 0.91444 0.90857 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.60 18.54 42.15 0.78 -5.82 16 2 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16 3 C -0.05 -0.53 6.03 -29.52 -0.18 -0.70 16 4 C 0.11 1.47 5.17 -4.04 -0.02 1.45 16 5 N -0.59 -10.63 2.46 -175.06 -0.43 -11.05 16 6 C 0.25 5.68 5.16 -5.19 -0.03 5.66 16 7 C -0.53 -13.94 9.39 -34.44 -0.32 -14.27 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.09 13.29 55.43 0.74 -24.36 16 11 Si 0.90 21.00 29.54 -169.99 -5.02 15.97 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 15 C 0.51 9.45 7.75 -10.99 -0.09 9.36 16 16 O -0.51 -11.93 16.08 -14.11 -0.23 -12.16 16 17 C 0.05 0.66 4.50 36.01 0.16 0.82 16 18 O -0.33 -4.96 9.76 -45.90 -0.45 -5.41 16 19 C 0.46 5.92 7.95 36.00 0.29 6.20 16 20 O -0.50 -7.38 15.78 -18.75 -0.30 -7.67 16 21 C -0.08 -0.76 5.82 -29.04 -0.17 -0.92 16 22 C -0.11 -1.01 4.33 -100.94 -0.44 -1.45 16 23 C -0.14 -1.22 9.37 -35.90 -0.34 -1.56 16 24 C -0.09 -0.66 6.11 -28.18 -0.17 -0.83 16 25 C -0.12 -0.81 6.01 -26.52 -0.16 -0.97 16 26 C -0.12 -0.91 6.01 -26.52 -0.16 -1.07 16 27 C -0.08 -0.66 5.80 -28.18 -0.16 -0.83 16 28 H 0.11 0.89 7.22 -51.93 -0.37 0.52 16 29 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.10 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 32 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.10 1.25 7.39 -51.93 -0.38 0.87 16 36 H 0.09 1.09 7.18 -51.93 -0.37 0.72 16 37 H 0.11 0.85 8.11 -51.93 -0.42 0.43 16 38 H 0.11 0.89 7.80 -51.93 -0.41 0.49 16 39 H 0.10 0.87 7.74 -52.49 -0.41 0.46 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 401.85 15.07 6.06 6.06 Total: -1.00 -34.02 401.85 -8.32 -42.34 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -7.27 Total: -2.74 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -2.20 Total: 4.84 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 1.09 Total: -41.23 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.97 Total: -25.24 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.02 -8.32 -42.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730335841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.528 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds