Wall clock time and date at job start Tue Mar 31 2020 23:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46539 * 198.26420 * 3 2 1 5 5 N 1.46501 * 109.46894 * 180.02562 * 4 3 2 6 6 C 1.46501 * 120.00258 * 270.00227 * 5 4 3 7 7 C 1.50701 * 109.46913 * 270.00250 * 6 5 4 8 8 H 1.07997 * 120.00184 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00069 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99961 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00363 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47405 * 89.99466 * 11 9 7 13 13 H 1.48495 * 109.47637 * 209.99937 * 11 9 7 14 14 H 1.48506 * 109.47210 * 330.00023 * 11 9 7 15 15 C 1.34774 * 120.00014 * 90.00262 * 5 4 3 16 16 O 1.21286 * 120.00187 * 180.02562 * 15 5 4 17 17 C 1.50701 * 120.00060 * 359.97438 * 15 5 4 18 18 O 1.45202 * 109.47450 * 180.02562 * 17 15 5 19 19 C 1.34230 * 117.00207 * 179.97438 * 18 17 15 20 20 O 1.20820 * 120.00012 * 359.97438 * 19 18 17 21 21 C 1.50698 * 119.99809 * 179.97438 * 19 18 17 22 22 C 1.50701 * 109.47031 * 179.97438 * 21 19 18 23 23 C 1.29445 * 117.95895 * 94.73363 * 22 21 19 24 24 C 1.50074 * 124.07477 * 180.75080 * 23 22 21 25 25 C 1.53016 * 110.14671 * 342.87319 * 24 23 22 26 26 C 1.53391 * 108.44058 * 49.43435 * 25 24 23 27 27 C 1.50066 * 117.96583 * 275.00349 * 22 21 19 28 28 H 1.09002 * 109.47214 * 78.27129 * 3 2 1 29 29 H 1.08998 * 109.47779 * 318.26174 * 3 2 1 30 30 H 1.08998 * 109.47659 * 60.00298 * 4 3 2 31 31 H 1.09000 * 109.47491 * 299.99854 * 4 3 2 32 32 H 1.08998 * 109.46765 * 29.99330 * 6 5 4 33 33 H 1.08999 * 109.47427 * 150.00095 * 6 5 4 34 34 H 0.97001 * 120.00351 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.47154 * 60.00189 * 17 15 5 36 36 H 1.09006 * 109.46806 * 300.00140 * 17 15 5 37 37 H 1.08999 * 109.47012 * 59.99823 * 21 19 18 38 38 H 1.08997 * 109.47081 * 300.00004 * 21 19 18 39 39 H 1.07999 * 117.96176 * 0.73020 * 23 22 21 40 40 H 1.09002 * 109.35609 * 222.66402 * 24 23 22 41 41 H 1.09003 * 109.35439 * 103.08085 * 24 23 22 42 42 H 1.09003 * 109.64533 * 289.75036 * 25 24 23 43 43 H 1.09000 * 109.64519 * 169.11862 * 25 24 23 44 44 H 1.09001 * 109.64689 * 172.88318 * 26 25 24 45 45 H 1.09003 * 109.64136 * 52.25083 * 26 25 24 46 46 H 1.09003 * 109.35468 * 282.79297 * 27 22 21 47 47 H 1.08998 * 109.35916 * 42.51411 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1173 1.3708 0.4521 5 7 4.5823 1.3717 0.4515 6 6 5.3156 0.9743 1.6560 7 6 5.5662 2.1873 2.5145 8 1 5.2149 3.1571 2.1947 9 6 6.2451 2.0590 3.7077 10 7 6.6734 0.8780 4.0969 11 14 6.5564 3.5625 4.7716 12 1 5.4270 3.7409 5.7192 13 1 7.8174 3.3773 5.5336 14 1 6.6722 4.7648 3.9077 15 6 5.2555 1.7382 -0.6570 16 8 6.4684 1.7385 -0.6577 17 6 4.5013 2.1464 -1.8962 18 8 5.4442 2.4926 -2.9447 19 6 4.9304 2.8802 -4.1227 20 8 3.7326 2.9281 -4.2729 21 6 5.8478 3.2556 -5.2578 22 6 5.0263 3.6495 -6.4583 23 6 4.7728 4.9067 -6.6341 24 6 3.9566 5.4489 -7.7708 25 6 3.8403 4.4032 -8.8819 26 6 3.4068 3.0730 -8.2528 27 6 4.5479 2.5595 -7.3721 28 1 2.9715 -0.2081 -1.0062 29 1 2.9718 -0.7660 0.6841 30 1 2.7539 1.5797 1.4583 31 1 2.7536 2.1375 -0.2320 32 1 4.7271 0.2479 2.2164 33 1 6.2682 0.5279 1.3707 34 1 7.1506 0.7876 4.9365 35 1 3.8739 3.0090 -1.6720 36 1 3.8754 1.3186 -2.2297 37 1 6.4777 2.4034 -5.5129 38 1 6.4755 4.0939 -4.9557 39 1 5.1733 5.6090 -5.9181 40 1 4.4372 6.3439 -8.1659 41 1 2.9605 5.7053 -7.4102 42 1 4.8064 4.2793 -9.3712 43 1 3.0956 4.7238 -9.6104 44 1 3.1956 2.3476 -9.0385 45 1 2.5158 3.2286 -7.6444 46 1 5.3725 2.2304 -8.0045 47 1 4.1918 1.7190 -6.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730335841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:15 Heat of formation + Delta-G solvation = -111.452106 kcal Electronic energy + Delta-G solvation = -28113.163674 eV Core-core repulsion = 24067.302925 eV Total energy + Delta-G solvation = -4045.860749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 9.73 seconds Orbital eigenvalues (eV) -41.79173 -40.66783 -39.40367 -38.06318 -37.42694 -36.70945 -34.88824 -33.97517 -32.23923 -31.63197 -30.90076 -29.04524 -27.92078 -25.38244 -24.66948 -24.15908 -23.04717 -21.72984 -20.30465 -19.00207 -18.88494 -18.43102 -18.37795 -17.87568 -17.73093 -17.39613 -16.80597 -16.44754 -16.11071 -15.96996 -15.70271 -15.15346 -15.02253 -14.76442 -14.61538 -14.38496 -14.33584 -13.82520 -13.78170 -13.60541 -13.57448 -13.47815 -13.20102 -13.09187 -13.01221 -12.96751 -12.74817 -12.67230 -12.51934 -12.19828 -12.04920 -11.74660 -11.67494 -11.67077 -11.61314 -11.32497 -11.10230 -10.70041 -10.58166 -9.74359 -9.58488 -8.18585 -6.30377 0.98690 1.15761 1.40515 1.42923 1.51359 1.55769 1.60914 1.81385 1.81902 2.36489 2.47499 3.04724 3.14128 3.55188 3.57698 3.77205 3.79869 3.98651 3.99417 4.08639 4.09469 4.13560 4.24717 4.33976 4.45958 4.51300 4.53699 4.68245 4.73633 4.75901 4.78691 5.00427 5.01169 5.04535 5.05981 5.10314 5.19785 5.30353 5.32990 5.35545 5.49569 5.56176 5.72562 5.83176 6.04892 6.10981 6.54005 6.59179 6.71235 6.78523 7.25231 7.42131 8.88403 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012371 B = 0.002536 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.802946 B =11036.770229 C =12498.448448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.245 3.755 3 C -0.039 4.039 4 C 0.108 3.892 5 N -0.590 5.590 6 C 0.260 3.740 7 C -0.542 4.542 8 H 0.054 0.946 9 C 0.013 3.987 10 N -0.924 5.924 11 Si 0.957 3.043 12 H -0.268 1.268 13 H -0.284 1.284 14 H -0.275 1.275 15 C 0.506 3.494 16 O -0.568 6.568 17 C 0.054 3.946 18 O -0.350 6.350 19 C 0.463 3.537 20 O -0.524 6.524 21 C -0.080 4.080 22 C -0.122 4.122 23 C -0.144 4.144 24 C -0.092 4.092 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.082 4.082 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.043 0.957 33 H 0.008 0.992 34 H 0.266 0.734 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.050 0.950 46 H 0.088 0.912 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.296 4.175 -24.038 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.073 4.073 3 C -0.080 4.080 4 C -0.016 4.016 5 N -0.322 5.322 6 C 0.139 3.861 7 C -0.581 4.581 8 H 0.072 0.928 9 C -0.187 4.187 10 N -0.564 5.564 11 Si 0.783 3.217 12 H -0.193 1.193 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.293 3.707 16 O -0.447 6.447 17 C -0.023 4.023 18 O -0.266 6.266 19 C 0.307 3.693 20 O -0.413 6.413 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.162 4.162 24 C -0.129 4.129 25 C -0.155 4.155 26 C -0.157 4.157 27 C -0.119 4.119 28 H 0.151 0.849 29 H 0.146 0.854 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.624 4.081 -23.884 25.119 hybrid contribution 0.667 0.541 1.368 1.615 sum -5.957 4.622 -22.516 23.745 Atomic orbital electron populations 1.81255 1.14421 1.09981 1.10893 1.29122 0.94941 0.91814 0.91395 1.19847 0.80171 1.00779 1.07232 1.21624 0.78729 0.96311 1.04984 1.47999 1.06894 1.65219 1.12062 1.18909 0.91698 0.94844 0.80608 1.21732 1.36549 0.95115 1.04699 0.92809 1.25699 0.95174 0.98720 0.99093 1.70012 1.38965 1.24263 1.23120 0.85565 0.77858 0.79600 0.78684 1.19278 1.20987 1.19942 1.20480 0.87708 0.77794 0.84684 1.90711 1.15986 1.53799 1.84157 1.22898 0.90564 1.04191 0.84610 1.86589 1.40874 1.77163 1.21955 1.24376 0.89161 0.72788 0.82943 1.90656 1.17709 1.50190 1.82707 1.20664 0.96660 1.06198 0.88147 1.20436 1.00368 0.95565 0.95825 1.22190 0.98931 0.95782 0.99304 1.20490 0.99321 0.99030 0.94031 1.21609 1.02179 0.94478 0.97270 1.21587 0.97501 0.97811 0.98819 1.20394 0.98777 0.95933 0.96767 0.84883 0.85430 0.88821 0.87976 0.93940 0.97338 0.92508 0.86893 0.85533 0.85097 0.85692 0.87697 0.89740 0.91152 0.91089 0.90721 0.90535 0.93151 0.89340 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.84 18.54 20.01 0.37 -13.47 16 2 C 0.24 5.43 15.43 89.44 1.38 6.81 16 3 C -0.04 -0.71 6.03 28.79 0.17 -0.53 16 4 C 0.11 2.59 5.17 86.38 0.45 3.04 16 5 N -0.59 -20.80 2.46 -826.15 -2.03 -22.82 16 6 C 0.26 12.22 5.16 85.63 0.44 12.66 16 7 C -0.54 -28.75 9.39 25.60 0.24 -28.51 16 8 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 9 C 0.01 0.69 5.46 84.65 0.46 1.15 16 10 N -0.92 -52.68 13.29 21.45 0.28 -52.40 16 11 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 C 0.51 18.56 7.75 87.66 0.68 19.24 16 16 O -0.57 -27.25 16.08 15.75 0.25 -27.00 16 17 C 0.05 1.44 4.50 71.24 0.32 1.76 16 18 O -0.35 -10.07 9.76 -45.06 -0.44 -10.51 16 19 C 0.46 11.19 7.95 71.24 0.57 11.75 16 20 O -0.52 -14.45 15.78 21.98 0.35 -14.11 16 21 C -0.08 -1.35 5.82 29.10 0.17 -1.18 16 22 C -0.12 -2.04 4.33 -15.10 -0.07 -2.10 16 23 C -0.14 -2.32 9.37 27.04 0.25 -2.07 16 24 C -0.09 -1.20 6.11 29.66 0.18 -1.02 16 25 C -0.12 -1.35 6.01 30.73 0.18 -1.17 16 26 C -0.12 -1.65 6.01 30.73 0.18 -1.46 16 27 C -0.08 -1.22 5.80 29.66 0.17 -1.05 16 28 H 0.13 1.75 7.22 -2.39 -0.02 1.73 16 29 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.09 2.42 8.07 -2.39 -0.02 2.40 16 31 H 0.10 1.95 6.44 -2.39 -0.02 1.93 16 32 H 0.04 1.95 8.07 -2.39 -0.02 1.93 16 33 H 0.01 0.47 7.42 -2.39 -0.02 0.45 16 34 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 35 H 0.11 2.65 7.39 -2.39 -0.02 2.63 16 36 H 0.13 2.52 7.18 -2.38 -0.02 2.51 16 37 H 0.13 1.73 8.11 -2.39 -0.02 1.71 16 38 H 0.13 1.79 7.80 -2.39 -0.02 1.77 16 39 H 0.11 1.61 7.74 -2.91 -0.02 1.59 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 43 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.05 0.86 8.12 -2.39 -0.02 0.84 16 46 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -75.52 401.85 7.57 -67.95 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.97 Total: 9.91 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 5.79 Total: 17.30 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -1.37 Total: -88.69 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: 0.16 Total: -51.62 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -75.52 7.57 -67.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730335841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.506 kcal (2) G-P(sol) polarization free energy of solvation -75.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.73 seconds