Wall clock time and date at job start Wed Apr 1 2020 00:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86804 * 119.99797 * 2 1 4 4 H 1.48499 * 109.47120 * 270.00185 * 3 2 1 5 5 H 1.48503 * 109.47031 * 30.00757 * 3 2 1 6 6 H 1.48505 * 109.46823 * 150.00310 * 3 2 1 7 7 C 1.38651 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00443 * 359.97438 * 7 2 1 9 9 O 1.34838 * 119.99444 * 179.97438 * 7 2 1 10 10 C 1.35751 * 116.99484 * 185.05646 * 9 7 2 11 11 C 1.38876 * 120.07089 * 354.46052 * 10 9 7 12 12 C 1.38103 * 119.93373 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.06371 * 0.02582 * 12 11 10 14 14 C 1.50710 * 119.92910 * 179.97438 * 13 12 11 15 15 N 1.46504 * 109.46976 * 90.00026 * 14 13 12 16 16 C 1.34769 * 119.99651 * 179.97438 * 15 14 13 17 17 O 1.21586 * 120.00528 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99613 * 179.97438 * 16 15 14 19 19 C 1.46502 * 119.99813 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47326 * 180.02562 * 19 18 16 21 21 O 1.42898 * 109.46990 * 64.99836 * 20 19 18 22 22 C 1.42902 * 113.99863 * 180.02562 * 21 20 19 23 23 C 1.53005 * 109.46903 * 180.02562 * 22 21 20 24 24 C 1.53007 * 117.49769 * 243.62184 * 23 22 21 25 25 C 1.52994 * 59.99847 * 252.51028 * 24 23 22 26 26 C 1.38303 * 120.14121 * 0.24733 * 13 12 11 27 27 C 1.38101 * 120.06741 * 359.46082 * 26 13 12 28 28 H 0.96999 * 119.99772 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.03734 * 0.02562 * 11 10 9 30 30 H 1.07996 * 119.97073 * 179.97438 * 12 11 10 31 31 H 1.08997 * 109.46638 * 329.99988 * 14 13 12 32 32 H 1.08998 * 109.47117 * 209.99637 * 14 13 12 33 33 H 0.97000 * 119.99456 * 359.97438 * 15 14 13 34 34 H 0.96998 * 120.00325 * 0.02562 * 18 16 15 35 35 H 1.08996 * 109.47102 * 60.00305 * 19 18 16 36 36 H 1.09002 * 109.47476 * 300.00360 * 19 18 16 37 37 H 1.09002 * 109.46984 * 305.00127 * 20 19 18 38 38 H 1.08996 * 109.47407 * 185.00103 * 20 19 18 39 39 H 1.08998 * 109.47064 * 60.00366 * 22 21 20 40 40 H 1.08995 * 109.47166 * 299.99938 * 22 21 20 41 41 H 1.08993 * 115.55096 * 29.32629 * 23 22 21 42 42 H 1.09004 * 117.49696 * 359.97438 * 24 23 22 43 43 H 1.08996 * 117.49929 * 145.02175 * 24 23 22 44 44 H 1.09003 * 117.50114 * 252.50727 * 25 24 23 45 45 H 1.09007 * 117.50009 * 107.49156 * 25 24 23 46 46 H 1.08004 * 119.96460 * 179.69997 * 26 13 12 47 47 H 1.08004 * 120.03543 * 180.27451 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6527 0.7002 6 1 3.5472 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2007 -0.0011 10 6 3.9734 -2.4056 -0.1082 11 6 3.2234 -3.5743 -0.0951 12 6 3.8533 -4.7985 -0.2037 13 6 5.2296 -4.8613 -0.3249 14 6 5.9138 -6.1989 -0.4427 15 7 6.0172 -6.5718 -1.8557 16 6 6.5982 -7.7368 -2.2043 17 8 7.0361 -8.4786 -1.3463 18 7 6.6929 -8.0800 -3.5042 19 6 7.3239 -9.3467 -3.8832 20 6 7.3025 -9.4916 -5.4062 21 8 8.1157 -8.4736 -5.9930 22 6 8.1640 -8.5191 -7.4205 23 6 9.0586 -7.3904 -7.9368 24 6 8.4045 -6.3082 -8.7982 25 6 9.3344 -7.3393 -9.4408 26 6 5.9797 -3.6994 -0.3326 27 6 5.3552 -2.4719 -0.2304 28 1 -0.4850 0.8401 0.0004 29 1 2.1487 -3.5260 -0.0001 30 1 3.2707 -5.7078 -0.1932 31 1 5.3335 -6.9520 0.0903 32 1 6.9121 -6.1357 -0.0096 33 1 5.6675 -5.9801 -2.5402 34 1 6.3432 -7.4885 -4.1888 35 1 6.7773 -10.1744 -3.4315 36 1 8.3558 -9.3580 -3.5320 37 1 6.2786 -9.3912 -5.7663 38 1 7.6907 -10.4716 -5.6835 39 1 7.1579 -8.3983 -7.8220 40 1 8.5698 -9.4789 -7.7399 41 1 9.8620 -7.0836 -7.2671 42 1 7.3368 -6.4007 -8.9975 43 1 8.7774 -5.2893 -8.6953 44 1 10.3192 -6.9986 -9.7607 45 1 8.8785 -8.1099 -10.0626 46 1 7.0547 -3.7520 -0.4225 47 1 5.9412 -1.5647 -0.2409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731043661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:58 Heat of formation + Delta-G solvation = -55.228245 kcal Electronic energy + Delta-G solvation = -26859.229537 eV Core-core repulsion = 22815.806837 eV Total energy + Delta-G solvation = -4043.422700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.02447 -39.25920 -38.86220 -37.24264 -36.95391 -34.80408 -34.30214 -32.46949 -30.68577 -30.33479 -29.31563 -27.11651 -25.94889 -24.49995 -22.89148 -22.77008 -22.16320 -21.08928 -20.93559 -20.57451 -18.50107 -17.96027 -17.46725 -17.34771 -16.74688 -16.35270 -15.61723 -15.48729 -15.00594 -14.88820 -14.69344 -14.41697 -14.16981 -14.01272 -13.86239 -13.70173 -13.38175 -13.22349 -12.91243 -12.72560 -12.55999 -12.26100 -11.99905 -11.97375 -11.85369 -11.50950 -11.45390 -10.93953 -10.88145 -10.83014 -10.75757 -10.72358 -10.22147 -10.19217 -9.96175 -9.47588 -9.29287 -8.94717 -8.74204 -8.36051 -7.46989 -6.49390 -4.16298 1.94173 2.04462 2.84196 2.99485 3.17422 3.21009 3.28043 3.35344 3.41793 4.17183 4.23370 4.29395 4.41789 4.48682 4.53282 4.66814 4.74365 4.76212 4.81392 4.88851 5.02094 5.02706 5.14725 5.17527 5.18552 5.35093 5.40059 5.45003 5.55925 5.59114 5.65057 5.74205 5.77239 5.91155 6.04654 6.27123 6.36258 6.47476 6.60239 6.69678 6.72907 6.86955 7.00985 7.14901 7.20933 7.51382 7.71564 7.95044 8.06770 8.65126 8.85282 9.46260 10.57785 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.001955 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.821363 B =14322.161695 C =16018.855775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.391 4.391 8 H 0.108 0.892 9 O -0.213 6.213 10 C 0.166 3.834 11 C -0.225 4.225 12 C -0.052 4.052 13 C -0.205 4.205 14 C 0.197 3.803 15 N -0.738 5.738 16 C 0.702 3.298 17 O -0.599 6.599 18 N -0.745 5.745 19 C 0.144 3.856 20 C 0.050 3.950 21 O -0.381 6.381 22 C 0.093 3.907 23 C -0.155 4.155 24 C -0.176 4.176 25 C -0.175 4.175 26 C -0.055 4.055 27 C -0.195 4.195 28 H 0.280 0.720 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.397 0.603 34 H 0.399 0.601 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.115 0.885 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.048 -16.686 -15.777 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.125 0.875 9 O -0.118 6.118 10 C 0.113 3.887 11 C -0.244 4.244 12 C -0.071 4.071 13 C -0.206 4.206 14 C 0.074 3.926 15 N -0.393 5.393 16 C 0.402 3.598 17 O -0.478 6.478 18 N -0.402 5.402 19 C 0.019 3.981 20 C -0.027 4.027 21 O -0.301 6.301 22 C 0.017 3.983 23 C -0.173 4.173 24 C -0.213 4.213 25 C -0.212 4.212 26 C -0.074 4.074 27 C -0.215 4.215 28 H 0.091 0.909 29 H 0.152 0.848 30 H 0.129 0.871 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.233 0.767 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.132 0.868 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.133 0.867 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.421 -16.873 -14.820 27.243 hybrid contribution -0.427 1.078 -0.858 1.442 sum 14.994 -15.795 -15.678 26.835 Atomic orbital electron populations 1.69645 1.05591 1.28639 1.47428 1.24492 0.95053 0.98927 0.95521 0.86172 0.80349 0.81330 0.79010 1.19827 1.20701 1.18317 1.20784 0.76779 0.96706 1.52374 0.87506 1.83578 1.22746 1.25844 1.79613 1.19184 0.91744 0.85498 0.92235 1.21280 1.01232 0.91775 1.10087 1.20709 0.93347 0.96830 0.96176 1.19312 0.93785 0.93599 1.13904 1.19840 0.99768 0.93003 0.80023 1.45453 1.63678 1.20673 1.09508 1.15992 0.79119 0.82056 0.82663 1.90905 1.54790 1.52949 1.49189 1.45014 1.65461 1.23487 1.06238 1.21160 0.99149 0.86084 0.91711 1.22799 0.94914 0.91779 0.93243 1.87948 1.69794 1.52980 1.19360 1.22007 0.98061 0.97172 0.81067 1.22142 1.02383 0.99152 0.93652 1.23090 0.98987 0.95590 1.03656 1.22979 1.01454 1.02504 0.94263 1.20554 0.98487 0.91193 0.97189 1.20218 0.91936 0.97912 1.11399 0.90933 0.84813 0.87081 0.91651 0.91658 0.76864 0.76741 0.90112 0.90815 0.92477 0.91523 0.93079 0.92878 0.86779 0.88585 0.88436 0.88361 0.88701 0.86727 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.73 13.96 55.48 0.77 -23.96 16 2 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 21.16 28.62 -169.99 -4.86 16.29 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.39 -10.71 9.95 30.88 0.31 -10.40 16 8 H 0.11 2.98 5.44 -52.49 -0.29 2.69 16 9 O -0.21 -5.45 8.59 0.02 0.00 -5.45 16 10 C 0.17 3.67 6.65 -39.11 -0.26 3.41 16 11 C -0.22 -4.60 9.17 -39.39 -0.36 -4.96 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 13 C -0.20 -3.18 5.25 -104.57 -0.55 -3.73 16 14 C 0.20 2.75 5.80 -5.19 -0.03 2.72 16 15 N -0.74 -9.37 5.55 -66.41 -0.37 -9.74 16 16 C 0.70 9.64 8.57 -86.92 -0.74 8.89 16 17 O -0.60 -10.50 16.34 5.29 0.09 -10.42 16 18 N -0.75 -7.63 5.51 -65.23 -0.36 -7.99 16 19 C 0.14 1.25 6.06 -4.04 -0.02 1.23 16 20 C 0.05 0.31 6.07 37.16 0.23 0.54 16 21 O -0.38 -3.16 10.29 -35.23 -0.36 -3.52 16 22 C 0.09 0.60 6.22 37.16 0.23 0.83 16 23 C -0.16 -1.04 6.06 -90.61 -0.55 -1.59 16 24 C -0.18 -1.08 10.18 -26.73 -0.27 -1.36 16 25 C -0.17 -0.93 10.25 -26.74 -0.27 -1.20 16 26 C -0.06 -0.89 9.69 -39.61 -0.38 -1.27 16 27 C -0.20 -3.67 9.99 -39.39 -0.39 -4.06 16 28 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16 30 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.40 4.44 8.48 -40.82 -0.35 4.10 16 34 H 0.40 3.36 8.49 -40.82 -0.35 3.02 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 0.29 7.88 -51.93 -0.41 -0.12 16 40 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 0.55 8.03 -51.93 -0.42 0.13 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.42 8.14 -51.92 -0.42 -0.01 16 46 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 47 H 0.12 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 401.14 15.07 6.05 6.05 Total: -1.00 -31.73 401.14 -9.75 -41.48 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.15 Total: 7.82 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -3.56 Total: -10.55 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.05 Total: -41.69 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.28 Total: -19.39 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.86 Total: 16.29 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.73 -9.75 -41.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731043661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.746 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds