Wall clock time and date at job start Wed Apr 1 2020 00:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86804 * 119.99797 * 2 1 4 4 H 1.48499 * 109.47120 * 270.00185 * 3 2 1 5 5 H 1.48503 * 109.47031 * 30.00757 * 3 2 1 6 6 H 1.48505 * 109.46823 * 150.00310 * 3 2 1 7 7 C 1.38651 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00443 * 359.97438 * 7 2 1 9 9 O 1.34838 * 119.99444 * 179.97438 * 7 2 1 10 10 C 1.35751 * 116.99484 * 185.05646 * 9 7 2 11 11 C 1.38876 * 120.07089 * 354.46052 * 10 9 7 12 12 C 1.38103 * 119.93373 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.06371 * 0.02582 * 12 11 10 14 14 C 1.50710 * 119.92910 * 179.97438 * 13 12 11 15 15 N 1.46504 * 109.46976 * 90.00026 * 14 13 12 16 16 C 1.34769 * 119.99651 * 179.97438 * 15 14 13 17 17 O 1.21586 * 120.00528 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99613 * 179.97438 * 16 15 14 19 19 C 1.46502 * 119.99813 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47326 * 180.02562 * 19 18 16 21 21 O 1.42898 * 109.46990 * 64.99836 * 20 19 18 22 22 C 1.42902 * 113.99863 * 180.02562 * 21 20 19 23 23 C 1.53005 * 109.46903 * 180.02562 * 22 21 20 24 24 C 1.53007 * 117.49769 * 243.62184 * 23 22 21 25 25 C 1.52994 * 59.99847 * 252.51028 * 24 23 22 26 26 C 1.38303 * 120.14121 * 0.24733 * 13 12 11 27 27 C 1.38101 * 120.06741 * 359.46082 * 26 13 12 28 28 H 0.96999 * 119.99772 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.03734 * 0.02562 * 11 10 9 30 30 H 1.07996 * 119.97073 * 179.97438 * 12 11 10 31 31 H 1.08997 * 109.46638 * 329.99988 * 14 13 12 32 32 H 1.08998 * 109.47117 * 209.99637 * 14 13 12 33 33 H 0.97000 * 119.99456 * 359.97438 * 15 14 13 34 34 H 0.96998 * 120.00325 * 0.02562 * 18 16 15 35 35 H 1.08996 * 109.47102 * 60.00305 * 19 18 16 36 36 H 1.09002 * 109.47476 * 300.00360 * 19 18 16 37 37 H 1.09002 * 109.46984 * 305.00127 * 20 19 18 38 38 H 1.08996 * 109.47407 * 185.00103 * 20 19 18 39 39 H 1.08998 * 109.47064 * 60.00366 * 22 21 20 40 40 H 1.08995 * 109.47166 * 299.99938 * 22 21 20 41 41 H 1.08993 * 115.55096 * 29.32629 * 23 22 21 42 42 H 1.09004 * 117.49696 * 359.97438 * 24 23 22 43 43 H 1.08996 * 117.49929 * 145.02175 * 24 23 22 44 44 H 1.09003 * 117.50114 * 252.50727 * 25 24 23 45 45 H 1.09007 * 117.50009 * 107.49156 * 25 24 23 46 46 H 1.08004 * 119.96460 * 179.69997 * 26 13 12 47 47 H 1.08004 * 120.03543 * 180.27451 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6527 0.7002 6 1 3.5472 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2007 -0.0011 10 6 3.9734 -2.4056 -0.1082 11 6 3.2234 -3.5743 -0.0951 12 6 3.8533 -4.7985 -0.2037 13 6 5.2296 -4.8613 -0.3249 14 6 5.9138 -6.1989 -0.4427 15 7 6.0172 -6.5718 -1.8557 16 6 6.5982 -7.7368 -2.2043 17 8 7.0361 -8.4786 -1.3463 18 7 6.6929 -8.0800 -3.5042 19 6 7.3239 -9.3467 -3.8832 20 6 7.3025 -9.4916 -5.4062 21 8 8.1157 -8.4736 -5.9930 22 6 8.1640 -8.5191 -7.4205 23 6 9.0586 -7.3904 -7.9368 24 6 8.4045 -6.3082 -8.7982 25 6 9.3344 -7.3393 -9.4408 26 6 5.9797 -3.6994 -0.3326 27 6 5.3552 -2.4719 -0.2304 28 1 -0.4850 0.8401 0.0004 29 1 2.1487 -3.5260 -0.0001 30 1 3.2707 -5.7078 -0.1932 31 1 5.3335 -6.9520 0.0903 32 1 6.9121 -6.1357 -0.0096 33 1 5.6675 -5.9801 -2.5402 34 1 6.3432 -7.4885 -4.1888 35 1 6.7773 -10.1744 -3.4315 36 1 8.3558 -9.3580 -3.5320 37 1 6.2786 -9.3912 -5.7663 38 1 7.6907 -10.4716 -5.6835 39 1 7.1579 -8.3983 -7.8220 40 1 8.5698 -9.4789 -7.7399 41 1 9.8620 -7.0836 -7.2671 42 1 7.3368 -6.4007 -8.9975 43 1 8.7774 -5.2893 -8.6953 44 1 10.3192 -6.9986 -9.7607 45 1 8.8785 -8.1099 -10.0626 46 1 7.0547 -3.7520 -0.4225 47 1 5.9412 -1.5647 -0.2409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731043661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:57 Heat of formation + Delta-G solvation = -76.231353 kcal Electronic energy + Delta-G solvation = -26860.140300 eV Core-core repulsion = 22815.806837 eV Total energy + Delta-G solvation = -4044.333463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.18066 -40.75449 -39.43933 -38.64659 -37.64170 -35.76079 -35.47211 -34.43864 -31.93505 -31.75094 -30.28035 -27.85327 -27.45681 -25.95733 -23.72153 -23.53940 -23.23984 -22.11762 -21.90708 -21.56840 -19.87115 -19.49741 -19.07881 -18.01106 -17.58635 -16.99995 -16.76398 -16.49484 -16.22252 -16.13205 -15.79342 -15.67241 -15.46311 -15.22494 -15.16667 -14.73466 -14.63185 -14.32086 -14.19564 -14.05444 -13.85310 -13.39331 -13.14878 -13.08900 -12.58410 -12.48575 -12.46322 -12.37480 -12.30754 -12.00495 -11.93650 -11.41590 -11.33062 -11.30194 -11.16786 -10.90921 -10.44281 -10.34633 -9.84235 -9.70685 -9.10392 -8.50712 -6.23669 0.47738 0.54864 1.32495 1.35603 1.52359 1.85424 2.19803 2.27644 2.50908 2.75396 2.95569 3.03090 3.12846 3.47890 3.80554 3.86508 3.97256 4.00077 4.02187 4.14534 4.16593 4.23417 4.35580 4.45584 4.46014 4.54794 4.57464 4.69468 4.71123 4.74448 4.78097 4.81642 4.91112 4.96371 5.02093 5.22642 5.23340 5.25171 5.33675 5.48475 5.53503 5.55088 5.71483 5.79050 5.88296 6.03195 6.19538 6.24880 6.83408 7.11421 7.56407 7.61250 8.60461 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.001955 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.821363 B =14322.161695 C =16018.855775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.083 0.917 9 O -0.242 6.242 10 C 0.129 3.871 11 C -0.238 4.238 12 C -0.049 4.049 13 C -0.173 4.173 14 C 0.202 3.798 15 N -0.732 5.732 16 C 0.700 3.300 17 O -0.638 6.638 18 N -0.732 5.732 19 C 0.141 3.859 20 C 0.055 3.945 21 O -0.405 6.405 22 C 0.093 3.907 23 C -0.169 4.169 24 C -0.184 4.184 25 C -0.165 4.165 26 C -0.045 4.045 27 C -0.192 4.192 28 H 0.285 0.715 29 H 0.110 0.890 30 H 0.134 0.866 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.407 0.593 34 H 0.409 0.591 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.152 0.848 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.392 -18.043 -17.235 30.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.101 0.899 9 O -0.149 6.149 10 C 0.080 3.920 11 C -0.257 4.257 12 C -0.067 4.067 13 C -0.174 4.174 14 C 0.078 3.922 15 N -0.387 5.387 16 C 0.399 3.601 17 O -0.520 6.520 18 N -0.389 5.389 19 C 0.017 3.983 20 C -0.021 4.021 21 O -0.325 6.325 22 C 0.017 3.983 23 C -0.187 4.187 24 C -0.221 4.221 25 C -0.201 4.201 26 C -0.063 4.063 27 C -0.211 4.211 28 H 0.094 0.906 29 H 0.128 0.872 30 H 0.152 0.848 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.242 0.758 34 H 0.245 0.755 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.170 0.830 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 17.786 -18.260 -16.329 30.272 hybrid contribution -0.930 1.148 -0.459 1.547 sum 16.856 -17.112 -16.788 29.305 Atomic orbital electron populations 1.69730 1.06899 1.29629 1.49885 1.25291 0.95886 1.02195 0.95505 0.85221 0.78804 0.77424 0.79304 1.18995 1.19378 1.18671 1.20709 0.78015 0.96159 1.52650 0.89927 1.83527 1.21323 1.27526 1.82560 1.19733 0.93236 0.85064 0.94006 1.21271 1.00333 0.93015 1.11116 1.20920 0.94313 0.96243 0.95244 1.19544 0.93050 0.94586 1.10189 1.19739 0.99861 0.91632 0.80921 1.45219 1.63609 1.20719 1.09168 1.16115 0.78868 0.81779 0.83305 1.90884 1.56495 1.54120 1.50542 1.44974 1.64579 1.24065 1.05268 1.21278 0.98087 0.85378 0.93601 1.22809 0.95685 0.92367 0.91268 1.87910 1.70342 1.53775 1.20478 1.22092 0.98543 0.97528 0.80156 1.22165 1.02440 0.99795 0.94304 1.23147 0.99441 0.95541 1.03946 1.23061 1.01555 1.02170 0.93356 1.20948 1.00316 0.89908 0.95150 1.20512 0.90508 0.99762 1.10314 0.90557 0.87196 0.84785 0.91563 0.90971 0.75758 0.75503 0.89724 0.92399 0.91009 0.89461 0.92156 0.91699 0.88228 0.88152 0.88787 0.87886 0.87471 0.83014 0.85109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.16 13.96 21.61 0.30 -53.85 16 2 C 0.01 0.56 5.49 84.83 0.47 1.03 16 3 Si 0.97 44.55 28.62 68.60 1.96 46.51 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.40 -22.96 9.95 67.92 0.68 -22.28 16 8 H 0.08 4.97 5.44 -2.91 -0.02 4.96 16 9 O -0.24 -12.76 8.59 -22.84 -0.20 -12.96 16 10 C 0.13 5.76 6.65 22.58 0.15 5.91 16 11 C -0.24 -9.92 9.17 22.39 0.21 -9.72 16 12 C -0.05 -1.57 9.69 22.25 0.22 -1.36 16 13 C -0.17 -4.81 5.25 -19.83 -0.10 -4.92 16 14 C 0.20 4.95 5.80 85.64 0.50 5.45 16 15 N -0.73 -16.32 5.55 -482.29 -2.68 -19.00 16 16 C 0.70 17.58 8.57 179.06 1.53 19.11 16 17 O -0.64 -21.25 16.34 -3.99 -0.07 -21.31 16 18 N -0.73 -13.34 5.51 -478.54 -2.64 -15.97 16 19 C 0.14 2.19 6.06 86.38 0.52 2.71 16 20 C 0.06 0.56 6.07 71.98 0.44 0.99 16 21 O -0.40 -5.88 10.29 -148.98 -1.53 -7.41 16 22 C 0.09 0.99 6.22 71.98 0.45 1.44 16 23 C -0.17 -2.04 6.06 -10.79 -0.07 -2.10 16 24 C -0.18 -2.02 10.18 30.59 0.31 -1.71 16 25 C -0.16 -1.45 10.25 30.59 0.31 -1.14 16 26 C -0.04 -1.27 9.69 22.25 0.22 -1.06 16 27 C -0.19 -6.86 9.99 22.39 0.22 -6.63 16 28 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.11 5.09 5.64 -2.91 -0.02 5.08 16 30 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 31 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 32 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 33 H 0.41 7.73 8.48 -92.71 -0.79 6.94 16 34 H 0.41 5.82 8.49 -92.71 -0.79 5.03 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.06 0.52 7.88 -2.39 -0.02 0.50 16 40 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.10 0.99 8.03 -2.39 -0.02 0.97 16 43 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 46 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 47 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -71.51 401.14 0.63 -70.88 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -0.58 Total: 27.38 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 6.05 Total: -14.27 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -5.01 Total: -88.83 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.79 Total: -41.68 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.96 Total: 46.51 kcal Total: -71.51 0.63 -70.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731043661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.349 kcal (2) G-P(sol) polarization free energy of solvation -71.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds