Wall clock time and date at job start Wed Apr 1 2020 00:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48498 * 109.47342 * 239.99888 * 3 2 1 5 5 H 1.48503 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47239 * 119.99897 * 3 2 1 7 7 C 1.38658 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00205 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99751 * 185.05558 * 9 7 2 11 11 C 1.38870 * 120.06932 * 354.46344 * 10 9 7 12 12 C 1.38097 * 119.93423 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.06238 * 0.02847 * 12 11 10 14 14 C 1.50706 * 119.92542 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.47003 * 90.00021 * 14 13 12 16 16 C 1.34776 * 119.99668 * 179.97438 * 15 14 13 17 17 O 1.21580 * 120.00501 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99910 * 179.97438 * 16 15 14 19 19 C 1.46507 * 120.00220 * 179.97438 * 18 16 15 20 20 C 1.52993 * 109.47138 * 179.97438 * 19 18 16 21 21 O 1.42904 * 109.47015 * 65.00355 * 20 19 18 22 22 C 1.42904 * 114.00010 * 179.97438 * 21 20 19 23 23 C 1.53778 * 113.61250 * 249.13268 * 22 21 20 24 24 C 1.53957 * 87.02167 * 220.04858 * 23 22 21 25 25 C 1.53779 * 113.61255 * 151.52945 * 22 21 20 26 26 C 1.38298 * 120.14108 * 0.24153 * 13 12 11 27 27 C 1.38098 * 120.06860 * 359.45815 * 26 13 12 28 28 H 0.97004 * 119.99492 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.03665 * 359.97438 * 11 10 9 30 30 H 1.08000 * 119.97201 * 179.97438 * 12 11 10 31 31 H 1.08996 * 109.47740 * 329.99681 * 14 13 12 32 32 H 1.09005 * 109.47090 * 209.99349 * 14 13 12 33 33 H 0.96997 * 120.00436 * 359.97438 * 15 14 13 34 34 H 0.97001 * 119.99997 * 0.02562 * 18 16 15 35 35 H 1.08997 * 109.46658 * 60.00121 * 19 18 16 36 36 H 1.08998 * 109.46684 * 300.00132 * 19 18 16 37 37 H 1.09004 * 109.47254 * 184.99789 * 20 19 18 38 38 H 1.09000 * 109.47788 * 305.00148 * 20 19 18 39 39 H 1.09004 * 112.84976 * 20.33229 * 22 21 20 40 40 H 1.09000 * 113.61934 * 334.57225 * 23 22 21 41 41 H 1.09004 * 113.60918 * 105.46997 * 23 22 21 42 42 H 1.09005 * 113.53618 * 270.81666 * 24 23 22 43 43 H 1.08995 * 113.66604 * 139.93582 * 24 23 22 44 44 H 1.09003 * 113.61078 * 254.52726 * 25 22 21 45 45 H 1.08996 * 113.61851 * 25.34626 * 25 22 21 46 46 H 1.08001 * 119.96609 * 179.70901 * 26 13 12 47 47 H 1.07995 * 120.03717 * 180.27086 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0016 10 6 2.0698 -3.5047 0.1045 11 6 3.4570 -3.4396 0.0921 12 6 4.2021 -4.5973 0.1997 13 6 3.5682 -5.8207 0.3192 14 6 4.3845 -7.0822 0.4358 15 7 4.6551 -7.3599 1.8486 16 6 5.3734 -8.4459 2.1963 17 8 5.7964 -9.1955 1.3376 18 7 5.6228 -8.7011 3.4959 19 6 6.4032 -9.8820 3.8740 20 6 6.5399 -9.9368 5.3968 21 8 5.2517 -10.1311 5.9841 22 6 5.2677 -10.1976 7.4115 23 6 4.9450 -11.5949 7.9667 24 6 4.1223 -10.8838 9.0566 25 6 3.9603 -9.7195 8.0650 26 6 2.1870 -5.8894 0.3262 27 6 1.4363 -4.7347 0.2252 28 1 -0.4849 0.8401 0.0004 29 1 3.9525 -2.4847 -0.0025 30 1 5.2809 -4.5474 0.1897 31 1 5.3271 -6.9557 -0.0966 32 1 3.8308 -7.9147 0.0015 33 1 4.3173 -6.7621 2.5337 34 1 5.2850 -8.1033 4.1811 35 1 7.3935 -9.8228 3.4225 36 1 5.8963 -10.7804 3.5218 37 1 7.1938 -10.7640 5.6734 38 1 6.9661 -9.0006 5.7574 39 1 6.1619 -9.7508 7.8461 40 1 4.3428 -12.2042 7.2928 41 1 5.8170 -12.1236 8.3518 42 1 4.7036 -10.6257 9.9419 43 1 3.1856 -11.3871 9.2959 44 1 4.0384 -8.7365 8.5294 45 1 3.0886 -9.8138 7.4176 46 1 1.6949 -6.8467 0.4149 47 1 0.3577 -4.7885 0.2352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743582441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:54 Heat of formation + Delta-G solvation = -61.000499 kcal Electronic energy + Delta-G solvation = -26986.945235 eV Core-core repulsion = 22943.272232 eV Total energy + Delta-G solvation = -4043.673003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.03743 -39.58469 -39.04936 -37.05895 -36.66846 -34.55428 -34.23823 -32.36177 -30.42995 -30.22529 -28.95504 -26.08523 -25.85270 -25.10973 -24.59957 -22.79519 -22.03539 -20.91143 -20.59352 -20.09071 -18.45312 -18.04780 -17.69079 -17.04723 -16.60579 -15.86803 -15.72627 -15.41548 -14.94102 -14.69623 -14.64434 -14.46602 -14.14917 -13.84193 -13.70585 -13.49699 -13.20096 -12.92510 -12.86049 -12.76838 -12.68772 -12.48949 -12.08496 -11.86661 -11.66098 -11.39431 -11.35824 -11.14590 -10.94264 -10.83319 -10.77747 -10.67793 -10.49868 -10.16526 -9.84523 -9.42104 -9.26278 -8.90275 -8.70154 -8.26706 -7.31705 -6.52197 -4.11143 2.05215 2.14775 2.88917 3.09243 3.10510 3.13018 3.22483 3.32971 3.90900 4.13594 4.17660 4.30335 4.37424 4.42570 4.59884 4.64007 4.78401 4.85323 4.99685 5.02755 5.18081 5.24824 5.27194 5.35707 5.37405 5.45664 5.47548 5.51976 5.58358 5.69300 5.71532 5.84719 5.86716 5.96967 6.13742 6.37239 6.39315 6.60824 6.65497 6.82115 6.84046 6.92853 7.02204 7.17662 7.29673 7.36373 7.73181 7.92452 8.10419 8.68444 8.93012 9.61517 10.65263 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.001847 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.571358 B =15157.743852 C =16309.182414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.238 4.238 12 C -0.050 4.050 13 C -0.213 4.213 14 C 0.198 3.802 15 N -0.738 5.738 16 C 0.701 3.299 17 O -0.600 6.600 18 N -0.745 5.745 19 C 0.143 3.857 20 C 0.048 3.952 21 O -0.370 6.370 22 C 0.060 3.940 23 C -0.158 4.158 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.053 4.053 27 C -0.196 4.196 28 H 0.272 0.728 29 H 0.128 0.872 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.397 0.603 34 H 0.398 0.602 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.113 0.887 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.779 -18.179 15.543 26.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.215 4.215 14 C 0.075 3.925 15 N -0.393 5.393 16 C 0.401 3.599 17 O -0.479 6.479 18 N -0.402 5.402 19 C 0.018 3.982 20 C -0.029 4.029 21 O -0.289 6.289 22 C 0.002 3.998 23 C -0.195 4.195 24 C -0.180 4.180 25 C -0.175 4.175 26 C -0.072 4.072 27 C -0.215 4.215 28 H 0.082 0.918 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.232 0.768 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.110 0.890 46 H 0.131 0.869 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.562 -18.666 14.583 26.359 hybrid contribution 0.425 1.454 0.825 1.725 sum 11.987 -17.213 15.408 26.026 Atomic orbital electron populations 1.70029 1.05995 1.27946 1.45422 1.25316 0.95864 0.98921 0.96379 0.85765 0.78715 0.79638 0.79240 1.19431 1.20223 1.19460 1.21303 0.91830 0.80749 1.53087 0.88988 1.83980 1.34485 1.11542 1.77620 1.19439 0.90324 0.88046 0.91625 1.21154 0.93775 0.98944 1.11816 1.20648 0.98383 0.91617 0.96262 1.19236 0.93569 0.93661 1.15007 1.19822 0.98220 0.94533 0.79910 1.45488 1.57400 1.26804 1.09580 1.16009 0.79357 0.81863 0.82654 1.90900 1.57740 1.50110 1.49143 1.45020 1.59657 1.29314 1.06234 1.21161 0.96469 0.88671 0.91852 1.22843 0.86132 1.00704 0.93212 1.88032 1.28448 1.93233 1.19185 1.23778 0.98582 0.96687 0.80718 1.23518 1.00587 0.97224 0.98219 1.22690 1.00906 0.97675 0.96775 1.23202 0.98076 0.98711 0.97506 1.20547 0.92796 0.96838 0.97051 1.20219 0.99673 0.90245 1.11356 0.91845 0.85451 0.87389 0.91812 0.91759 0.76891 0.76774 0.90248 0.90866 0.91620 0.92525 0.89598 0.89163 0.91407 0.90034 0.90684 0.90925 0.88979 0.86921 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.70 13.67 55.48 0.76 -23.94 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.03 29.55 -169.99 -5.02 15.00 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.71 9.49 30.89 0.29 -10.42 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.83 9.76 0.03 0.00 -4.83 16 10 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 11 C -0.24 -4.94 9.17 -39.40 -0.36 -5.30 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 13 C -0.21 -3.47 5.25 -104.57 -0.55 -4.02 16 14 C 0.20 2.88 5.80 -5.19 -0.03 2.85 16 15 N -0.74 -9.70 5.55 -66.41 -0.37 -10.07 16 16 C 0.70 9.88 8.57 -86.92 -0.74 9.13 16 17 O -0.60 -10.73 16.34 5.29 0.09 -10.64 16 18 N -0.75 -7.83 5.51 -65.23 -0.36 -8.19 16 19 C 0.14 1.29 6.06 -4.04 -0.02 1.26 16 20 C 0.05 0.32 5.92 37.15 0.22 0.54 16 21 O -0.37 -3.11 10.30 -35.23 -0.36 -3.47 16 22 C 0.06 0.39 4.30 -25.92 -0.11 0.28 16 23 C -0.16 -0.94 7.93 -25.83 -0.20 -1.14 16 24 C -0.14 -0.76 8.09 -25.83 -0.21 -0.96 16 25 C -0.14 -0.88 7.91 -25.92 -0.21 -1.08 16 26 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 27 C -0.20 -3.97 9.99 -39.40 -0.39 -4.36 16 28 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 30 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 31 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 32 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.40 4.63 8.48 -40.82 -0.35 4.28 16 34 H 0.40 3.45 8.49 -40.82 -0.35 3.10 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.44 7.88 -51.93 -0.41 0.03 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 47 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 397.75 15.07 5.99 5.99 Total: -1.00 -32.58 397.75 -9.86 -42.44 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.14 Total: 9.03 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -3.44 Total: -11.32 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.03 Total: -42.21 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.28 Total: -18.94 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.58 -9.86 -42.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743582441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.561 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds