Wall clock time and date at job start Wed Apr 1 2020 00:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48498 * 109.47342 * 239.99888 * 3 2 1 5 5 H 1.48503 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47239 * 119.99897 * 3 2 1 7 7 C 1.38658 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00205 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99751 * 185.05558 * 9 7 2 11 11 C 1.38870 * 120.06932 * 354.46344 * 10 9 7 12 12 C 1.38097 * 119.93423 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.06238 * 0.02847 * 12 11 10 14 14 C 1.50706 * 119.92542 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.47003 * 90.00021 * 14 13 12 16 16 C 1.34776 * 119.99668 * 179.97438 * 15 14 13 17 17 O 1.21580 * 120.00501 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99910 * 179.97438 * 16 15 14 19 19 C 1.46507 * 120.00220 * 179.97438 * 18 16 15 20 20 C 1.52993 * 109.47138 * 179.97438 * 19 18 16 21 21 O 1.42904 * 109.47015 * 65.00355 * 20 19 18 22 22 C 1.42904 * 114.00010 * 179.97438 * 21 20 19 23 23 C 1.53778 * 113.61250 * 249.13268 * 22 21 20 24 24 C 1.53957 * 87.02167 * 220.04858 * 23 22 21 25 25 C 1.53779 * 113.61255 * 151.52945 * 22 21 20 26 26 C 1.38298 * 120.14108 * 0.24153 * 13 12 11 27 27 C 1.38098 * 120.06860 * 359.45815 * 26 13 12 28 28 H 0.97004 * 119.99492 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.03665 * 359.97438 * 11 10 9 30 30 H 1.08000 * 119.97201 * 179.97438 * 12 11 10 31 31 H 1.08996 * 109.47740 * 329.99681 * 14 13 12 32 32 H 1.09005 * 109.47090 * 209.99349 * 14 13 12 33 33 H 0.96997 * 120.00436 * 359.97438 * 15 14 13 34 34 H 0.97001 * 119.99997 * 0.02562 * 18 16 15 35 35 H 1.08997 * 109.46658 * 60.00121 * 19 18 16 36 36 H 1.08998 * 109.46684 * 300.00132 * 19 18 16 37 37 H 1.09004 * 109.47254 * 184.99789 * 20 19 18 38 38 H 1.09000 * 109.47788 * 305.00148 * 20 19 18 39 39 H 1.09004 * 112.84976 * 20.33229 * 22 21 20 40 40 H 1.09000 * 113.61934 * 334.57225 * 23 22 21 41 41 H 1.09004 * 113.60918 * 105.46997 * 23 22 21 42 42 H 1.09005 * 113.53618 * 270.81666 * 24 23 22 43 43 H 1.08995 * 113.66604 * 139.93582 * 24 23 22 44 44 H 1.09003 * 113.61078 * 254.52726 * 25 22 21 45 45 H 1.08996 * 113.61851 * 25.34626 * 25 22 21 46 46 H 1.08001 * 119.96609 * 179.70901 * 26 13 12 47 47 H 1.07995 * 120.03717 * 180.27086 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0016 10 6 2.0698 -3.5047 0.1045 11 6 3.4570 -3.4396 0.0921 12 6 4.2021 -4.5973 0.1997 13 6 3.5682 -5.8207 0.3192 14 6 4.3845 -7.0822 0.4358 15 7 4.6551 -7.3599 1.8486 16 6 5.3734 -8.4459 2.1963 17 8 5.7964 -9.1955 1.3376 18 7 5.6228 -8.7011 3.4959 19 6 6.4032 -9.8820 3.8740 20 6 6.5399 -9.9368 5.3968 21 8 5.2517 -10.1311 5.9841 22 6 5.2677 -10.1976 7.4115 23 6 4.9450 -11.5949 7.9667 24 6 4.1223 -10.8838 9.0566 25 6 3.9603 -9.7195 8.0650 26 6 2.1870 -5.8894 0.3262 27 6 1.4363 -4.7347 0.2252 28 1 -0.4849 0.8401 0.0004 29 1 3.9525 -2.4847 -0.0025 30 1 5.2809 -4.5474 0.1897 31 1 5.3271 -6.9557 -0.0966 32 1 3.8308 -7.9147 0.0015 33 1 4.3173 -6.7621 2.5337 34 1 5.2850 -8.1033 4.1811 35 1 7.3935 -9.8228 3.4225 36 1 5.8963 -10.7804 3.5218 37 1 7.1938 -10.7640 5.6734 38 1 6.9661 -9.0006 5.7574 39 1 6.1619 -9.7508 7.8461 40 1 4.3428 -12.2042 7.2928 41 1 5.8170 -12.1236 8.3518 42 1 4.7036 -10.6257 9.9419 43 1 3.1856 -11.3871 9.2959 44 1 4.0384 -8.7365 8.5294 45 1 3.0886 -9.8138 7.4176 46 1 1.6949 -6.8467 0.4149 47 1 0.3577 -4.7885 0.2352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743582441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:50 Heat of formation + Delta-G solvation = -83.181927 kcal Electronic energy + Delta-G solvation = -26987.907094 eV Core-core repulsion = 22943.272232 eV Total energy + Delta-G solvation = -4044.634862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 34.08 seconds Orbital eigenvalues (eV) -41.14587 -40.68142 -40.11681 -38.55608 -37.42151 -35.63784 -35.32216 -34.26504 -31.85519 -31.61159 -29.94703 -27.61826 -26.54647 -26.16616 -25.47843 -23.63932 -23.52209 -22.18180 -21.90808 -20.55551 -19.88770 -19.48886 -18.81197 -18.23065 -17.53380 -16.75070 -16.48388 -16.40123 -16.33454 -16.07163 -15.82972 -15.63872 -15.49237 -15.22580 -14.93874 -14.81179 -14.37558 -14.30337 -13.97157 -13.62073 -13.48528 -13.35480 -13.23561 -13.03904 -12.98449 -12.52748 -12.40215 -12.37132 -12.21173 -12.13967 -11.89158 -11.61493 -11.37065 -11.27103 -11.19892 -10.79441 -10.35557 -10.33934 -9.81504 -9.70059 -9.01464 -8.47620 -6.15958 0.53578 0.58385 1.36158 1.45756 1.52083 1.86527 2.17799 2.20223 2.72045 2.81686 3.14156 3.48267 3.49173 3.69079 3.72557 3.88652 3.91247 3.97961 4.04421 4.09658 4.18303 4.24576 4.41832 4.48059 4.53963 4.57665 4.69330 4.76083 4.81512 4.84372 4.87281 4.91118 5.04981 5.05529 5.05727 5.14921 5.25658 5.27455 5.41898 5.48629 5.53174 5.55387 5.69441 5.76605 6.01800 6.03805 6.16962 6.35179 6.96953 7.11995 7.61593 7.76259 8.74921 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.001847 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.571358 B =15157.743852 C =16309.182414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.244 4.244 12 C -0.044 4.044 13 C -0.181 4.181 14 C 0.204 3.796 15 N -0.731 5.731 16 C 0.699 3.301 17 O -0.639 6.639 18 N -0.732 5.732 19 C 0.141 3.859 20 C 0.054 3.946 21 O -0.393 6.393 22 C 0.057 3.943 23 C -0.159 4.159 24 C -0.138 4.138 25 C -0.144 4.144 26 C -0.044 4.044 27 C -0.205 4.205 28 H 0.273 0.727 29 H 0.122 0.878 30 H 0.140 0.860 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.407 0.593 34 H 0.409 0.591 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.145 0.855 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.581 -19.512 17.016 29.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.072 3.928 11 C -0.263 4.263 12 C -0.063 4.063 13 C -0.182 4.182 14 C 0.080 3.920 15 N -0.387 5.387 16 C 0.399 3.601 17 O -0.521 6.521 18 N -0.389 5.389 19 C 0.016 3.984 20 C -0.023 4.023 21 O -0.313 6.313 22 C 0.000 4.000 23 C -0.197 4.197 24 C -0.175 4.175 25 C -0.181 4.181 26 C -0.062 4.062 27 C -0.224 4.224 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.158 0.842 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.242 0.758 34 H 0.245 0.755 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.163 0.837 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.393 -20.047 16.105 29.469 hybrid contribution -0.322 1.464 0.419 1.557 sum 14.072 -18.583 16.524 28.572 Atomic orbital electron populations 1.70177 1.08029 1.28912 1.48534 1.26594 0.96839 1.02780 0.95800 0.84654 0.77393 0.74280 0.79958 1.18211 1.19773 1.18052 1.21797 0.92583 0.81326 1.53300 0.87873 1.83951 1.36066 1.12665 1.80843 1.19986 0.91653 0.87921 0.93266 1.21247 0.92976 1.00090 1.11970 1.20943 0.99842 0.90647 0.94823 1.19493 0.93415 0.94149 1.11166 1.19710 0.98081 0.93268 0.80893 1.45240 1.57349 1.26915 1.09189 1.16124 0.79142 0.81504 0.83322 1.90880 1.59311 1.51383 1.50507 1.44971 1.58963 1.29679 1.05241 1.21276 0.96066 0.87243 0.93771 1.22853 0.85873 1.02328 0.91216 1.87999 1.29514 1.93455 1.20329 1.23948 0.99185 0.97012 0.79889 1.23499 1.00942 0.97051 0.98195 1.22706 1.01022 0.96885 0.96901 1.23220 0.97635 0.99513 0.97773 1.20875 0.93131 0.96950 0.95250 1.20442 1.00063 0.90408 1.11505 0.91812 0.86075 0.84232 0.91326 0.91395 0.75787 0.75499 0.89816 0.92579 0.89733 0.90902 0.87754 0.90568 0.90247 0.88609 0.90760 0.90338 0.90598 0.83685 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.54 13.67 21.61 0.30 -55.25 16 2 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 3 Si 1.02 41.87 29.55 68.60 2.03 43.90 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.41 -23.51 9.49 67.92 0.64 -22.86 16 8 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 9 O -0.23 -13.45 9.76 -22.80 -0.22 -13.68 16 10 C 0.12 5.87 6.65 22.58 0.15 6.02 16 11 C -0.24 -10.05 9.17 22.39 0.21 -9.84 16 12 C -0.04 -1.42 9.69 22.25 0.22 -1.20 16 13 C -0.18 -5.32 5.25 -19.83 -0.10 -5.42 16 14 C 0.20 5.21 5.80 85.63 0.50 5.71 16 15 N -0.73 -16.89 5.55 -482.29 -2.68 -19.57 16 16 C 0.70 17.98 8.57 179.05 1.53 19.51 16 17 O -0.64 -21.64 16.34 -3.97 -0.06 -21.70 16 18 N -0.73 -13.64 5.51 -478.54 -2.64 -16.28 16 19 C 0.14 2.25 6.06 86.38 0.52 2.77 16 20 C 0.05 0.56 5.92 71.98 0.43 0.99 16 21 O -0.39 -5.83 10.30 -148.98 -1.53 -7.37 16 22 C 0.06 0.62 4.30 31.12 0.13 0.75 16 23 C -0.16 -1.62 7.93 31.18 0.25 -1.38 16 24 C -0.14 -1.22 8.09 31.18 0.25 -0.97 16 25 C -0.14 -1.64 7.91 31.12 0.25 -1.39 16 26 C -0.04 -1.38 9.69 22.25 0.22 -1.17 16 27 C -0.20 -8.33 9.99 22.39 0.22 -8.10 16 28 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 29 H 0.12 5.09 5.64 -2.91 -0.02 5.07 16 30 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 31 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 32 H 0.07 1.77 8.08 -2.38 -0.02 1.75 16 33 H 0.41 8.06 8.48 -92.71 -0.79 7.28 16 34 H 0.41 5.95 8.49 -92.71 -0.79 5.17 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.10 0.74 7.88 -2.38 -0.02 0.72 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 0.61 8.14 -2.38 -0.02 0.60 16 42 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 47 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -74.87 397.75 0.49 -74.38 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -0.58 Total: 32.90 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 5.88 Total: -17.35 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -5.02 Total: -91.10 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.82 Total: -42.74 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -74.87 0.49 -74.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743582441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.797 kcal (2) G-P(sol) polarization free energy of solvation -74.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 34.08 seconds