Wall clock time and date at job start Tue Mar 31 2020 21:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47019 * 134.07178 * 3 2 1 5 5 N 1.46496 * 109.47332 * 179.97438 * 4 3 2 6 6 C 1.46502 * 119.99977 * 89.99512 * 5 4 3 7 7 C 1.50702 * 109.47130 * 90.00369 * 6 5 4 8 8 H 1.08002 * 119.99783 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00365 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99388 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00213 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47087 * 179.97438 * 11 9 7 13 13 H 1.48501 * 109.47055 * 300.00333 * 11 9 7 14 14 H 1.48502 * 109.47002 * 60.00087 * 11 9 7 15 15 C 1.34779 * 120.00030 * 270.00439 * 5 4 3 16 16 O 1.21277 * 119.99995 * 179.97438 * 15 5 4 17 17 C 1.50697 * 119.99942 * 359.97438 * 15 5 4 18 18 O 1.45194 * 109.47024 * 180.02562 * 17 15 5 19 19 C 1.34232 * 116.99979 * 180.02562 * 18 17 15 20 20 O 1.20829 * 120.00044 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.00154 * 180.02562 * 19 18 17 22 22 H 1.09003 * 115.55825 * 11.69739 * 21 19 18 23 23 C 1.53085 * 117.51047 * 157.42086 * 21 19 18 24 24 C 1.52559 * 117.50855 * 225.92008 * 21 19 18 25 25 C 1.53873 * 120.82301 * 142.33549 * 24 21 19 26 26 C 1.54993 * 104.06015 * 192.34826 * 25 24 21 27 27 C 1.54924 * 102.81871 * 37.57153 * 26 25 24 28 28 C 1.53476 * 121.09386 * 2.95995 * 24 21 19 29 29 H 1.08998 * 109.46869 * 14.07094 * 3 2 1 30 30 H 1.08999 * 109.46681 * 254.07206 * 3 2 1 31 31 H 1.09004 * 109.47507 * 59.99519 * 4 3 2 32 32 H 1.09006 * 109.47097 * 299.99815 * 4 3 2 33 33 H 1.08996 * 109.47192 * 330.00619 * 6 5 4 34 34 H 1.08997 * 109.47382 * 210.00146 * 6 5 4 35 35 H 0.97003 * 119.99446 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47350 * 300.00732 * 17 15 5 37 37 H 1.09004 * 109.46805 * 60.00589 * 17 15 5 38 38 H 1.09008 * 117.50856 * 214.90993 * 23 21 19 39 39 H 1.08997 * 117.51327 * 359.95645 * 23 21 19 40 40 H 1.09000 * 110.51463 * 310.99532 * 25 24 21 41 41 H 1.09006 * 110.51247 * 73.70692 * 25 24 21 42 42 H 1.08995 * 110.74628 * 279.24128 * 26 25 24 43 43 H 1.08999 * 110.89625 * 155.97512 * 26 25 24 44 44 H 1.08997 * 110.48133 * 203.59825 * 27 26 25 45 45 H 1.08993 * 110.48286 * 80.96338 * 27 26 25 46 46 H 1.09006 * 110.07237 * 263.32358 * 28 24 21 47 47 H 1.09001 * 110.06810 * 24.79301 * 28 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1176 1.0042 -1.0364 5 7 4.5825 1.0054 -1.0360 6 6 5.3160 0.0942 -1.9181 7 6 5.5670 0.7698 -3.2416 8 1 5.2151 1.7770 -3.4090 9 6 6.2461 0.1022 -4.2387 10 7 6.6742 -1.1246 -4.0348 11 14 6.5566 0.9394 -5.8793 12 1 7.3012 0.0163 -6.7730 13 1 5.2587 1.2966 -6.5063 14 1 7.3573 2.1712 -5.6628 15 6 5.2556 1.8446 -0.2240 16 8 6.4683 1.8452 -0.2234 17 6 4.5011 2.7821 0.6831 18 8 5.4438 3.5761 1.4505 19 6 4.9299 4.4670 2.3131 20 8 3.7319 4.5799 2.4228 21 6 5.8469 5.3272 3.1437 22 1 6.8970 5.3136 2.8516 23 6 5.2819 6.6409 3.6901 24 6 5.5299 5.4647 4.6297 25 6 6.6578 5.5160 5.6750 26 6 5.9253 5.3333 7.0287 27 6 4.8200 4.3036 6.6851 28 6 4.3613 4.6990 5.2650 29 1 2.9718 -0.9960 -0.2498 30 1 2.9712 0.2828 0.9882 31 1 2.7538 2.0009 -0.7866 32 1 2.7544 0.7220 -2.0246 33 1 4.7276 -0.8094 -2.0773 34 1 6.2685 -0.1688 -1.4580 35 1 7.1516 -1.5944 -4.7365 36 1 3.8743 3.4420 0.0833 37 1 3.8745 2.2043 1.3626 38 1 5.9605 7.4913 3.7579 39 1 4.2471 6.8832 3.4480 40 1 7.3670 4.7044 5.5120 41 1 7.1653 6.4802 5.6425 42 1 5.4865 6.2743 7.3603 43 1 6.6011 4.9361 7.7860 44 1 3.9919 4.3836 7.3894 45 1 5.2269 3.2924 6.6867 46 1 3.4809 5.3392 5.3209 47 1 4.1377 3.8062 4.6811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747731299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:11 Heat of formation + Delta-G solvation = -77.622142 kcal Electronic energy + Delta-G solvation = -28395.220899 eV Core-core repulsion = 24350.827127 eV Total energy + Delta-G solvation = -4044.393772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -40.98014 -39.54655 -38.73211 -36.92325 -36.34084 -35.28397 -34.47559 -32.95504 -30.92566 -29.51610 -29.07119 -27.03665 -26.04207 -24.65308 -24.09069 -22.69559 -21.22220 -20.63632 -19.23430 -18.77188 -17.83350 -17.72480 -16.74130 -16.54299 -16.47381 -16.18338 -15.78696 -15.55315 -15.22831 -14.76001 -14.55339 -14.29918 -13.85657 -13.65756 -13.38997 -13.34093 -12.92282 -12.80216 -12.69237 -12.49089 -12.40764 -12.14929 -12.07328 -11.79609 -11.48134 -11.41456 -11.33240 -11.30842 -11.07007 -10.98888 -10.89730 -10.68656 -10.67181 -10.63695 -10.56509 -10.23485 -10.05939 -9.78583 -9.15034 -8.50689 -7.97537 -6.12825 -4.17836 1.93307 2.33514 2.70191 2.79584 3.10391 3.28666 3.33473 3.36615 3.45253 3.57715 4.03573 4.14014 4.24402 4.38165 4.39749 4.47063 4.71795 4.79397 4.81391 4.90781 4.96258 5.00416 5.12862 5.14980 5.18159 5.23009 5.30641 5.35120 5.41625 5.43177 5.47283 5.55473 5.63822 5.71103 5.75103 5.77290 5.84510 5.95837 5.99851 6.03296 6.31304 6.82397 7.25455 7.33165 7.55390 7.68490 7.82810 8.08515 8.11931 8.70814 8.88002 9.47806 10.95359 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.002732 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.034996 B =10246.275405 C =11742.505801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.113 3.887 5 N -0.592 5.592 6 C 0.246 3.754 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.286 1.286 13 H -0.277 1.277 14 H -0.276 1.276 15 C 0.509 3.491 16 O -0.508 6.508 17 C 0.046 3.954 18 O -0.324 6.324 19 C 0.492 3.508 20 O -0.510 6.510 21 C -0.160 4.160 22 H 0.136 0.864 23 C -0.131 4.131 24 C -0.091 4.091 25 C -0.091 4.091 26 C -0.122 4.122 27 C -0.125 4.125 28 C -0.090 4.090 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.039 0.961 34 H 0.049 0.951 35 H 0.265 0.735 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.111 11.445 19.624 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.014 4.014 5 N -0.325 5.325 6 C 0.128 3.872 7 C -0.571 4.571 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.726 3.274 12 H -0.212 1.212 13 H -0.202 1.202 14 H -0.201 1.201 15 C 0.294 3.706 16 O -0.383 6.383 17 C -0.031 4.031 18 O -0.239 6.239 19 C 0.336 3.664 20 O -0.399 6.399 21 C -0.179 4.179 22 H 0.154 0.846 23 C -0.168 4.168 24 C -0.092 4.092 25 C -0.128 4.128 26 C -0.159 4.159 27 C -0.162 4.162 28 C -0.127 4.127 29 H 0.138 0.862 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.385 11.268 19.520 22.962 hybrid contribution 0.427 0.280 -1.255 1.355 sum -3.958 11.549 18.265 21.969 Atomic orbital electron populations 1.81212 1.13000 1.08905 1.08818 1.29040 0.95046 0.93063 0.93062 1.19889 0.81533 1.04858 1.02958 1.21397 0.81945 0.98067 0.99962 1.48160 1.04988 1.39187 1.40203 1.19416 0.92668 0.87407 0.87684 1.21367 1.37019 1.00950 0.97760 0.92340 1.24910 0.95183 0.94878 0.98917 1.69909 1.38021 1.11107 1.34117 0.86557 0.78425 0.79413 0.83050 1.21160 1.20214 1.20121 1.19738 0.88183 0.81555 0.81158 1.90742 1.13283 1.67392 1.66856 1.22983 0.91284 0.94215 0.94623 1.86554 1.39913 1.47602 1.49821 1.22569 0.87739 0.78334 0.77773 1.90650 1.16556 1.67065 1.65637 1.21841 1.00456 1.00079 0.95548 0.84623 1.23197 1.03112 0.90301 1.00160 1.21884 0.98715 1.00547 0.88020 1.21974 0.95707 1.02371 0.92792 1.22472 0.97508 0.99391 0.96547 1.22382 0.98487 0.99259 0.96104 1.21681 0.96015 0.99694 0.95358 0.86199 0.87689 0.90660 0.88178 0.94302 0.93337 0.92532 0.88504 0.88766 0.87195 0.87295 0.90457 0.91003 0.91299 0.91260 0.91424 0.91400 0.90833 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.60 18.54 42.15 0.78 -5.82 16 2 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16 3 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16 4 C 0.11 1.47 5.17 -4.05 -0.02 1.45 16 5 N -0.59 -10.69 2.46 -175.06 -0.43 -11.12 16 6 C 0.25 5.72 5.16 -5.19 -0.03 5.69 16 7 C -0.53 -14.02 9.39 -34.44 -0.32 -14.34 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 11 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.51 9.55 7.75 -10.99 -0.09 9.47 16 16 O -0.51 -12.04 16.08 -14.10 -0.23 -12.27 16 17 C 0.05 0.67 4.50 36.00 0.16 0.84 16 18 O -0.32 -5.08 9.75 -45.91 -0.45 -5.53 16 19 C 0.49 6.64 6.98 36.01 0.25 6.90 16 20 O -0.51 -7.42 14.83 -18.75 -0.28 -7.70 16 21 C -0.16 -1.66 6.16 -91.95 -0.57 -2.23 16 22 H 0.14 1.29 8.14 -51.93 -0.42 0.86 16 23 C -0.13 -1.08 9.75 -26.91 -0.26 -1.34 16 24 C -0.09 -0.79 2.43 -154.25 -0.37 -1.17 16 25 C -0.09 -0.63 6.58 -25.22 -0.17 -0.79 16 26 C -0.12 -0.76 6.91 -24.66 -0.17 -0.93 16 27 C -0.12 -0.91 6.84 -24.99 -0.17 -1.08 16 28 C -0.09 -0.82 5.66 -25.76 -0.15 -0.97 16 29 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.11 0.90 7.22 -51.93 -0.38 0.52 16 31 H 0.08 0.84 6.44 -51.93 -0.33 0.50 16 32 H 0.10 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.04 0.88 8.07 -51.93 -0.42 0.47 16 34 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.10 1.27 7.39 -51.93 -0.38 0.89 16 37 H 0.09 1.11 7.18 -51.93 -0.37 0.74 16 38 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.11 0.98 7.85 -51.93 -0.41 0.57 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.75 6.82 -51.93 -0.35 0.40 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -33.65 399.97 -8.58 -42.22 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -7.22 Total: -2.16 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -2.50 Total: 4.74 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 1.09 Total: -41.37 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.95 Total: -25.50 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.65 -8.58 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747731299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.399 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds