Wall clock time and date at job start Tue Mar 31 2020 21:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47019 * 134.07178 * 3 2 1 5 5 N 1.46496 * 109.47332 * 179.97438 * 4 3 2 6 6 C 1.46502 * 119.99977 * 89.99512 * 5 4 3 7 7 C 1.50702 * 109.47130 * 90.00369 * 6 5 4 8 8 H 1.08002 * 119.99783 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00365 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99388 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00213 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47087 * 179.97438 * 11 9 7 13 13 H 1.48501 * 109.47055 * 300.00333 * 11 9 7 14 14 H 1.48502 * 109.47002 * 60.00087 * 11 9 7 15 15 C 1.34779 * 120.00030 * 270.00439 * 5 4 3 16 16 O 1.21277 * 119.99995 * 179.97438 * 15 5 4 17 17 C 1.50697 * 119.99942 * 359.97438 * 15 5 4 18 18 O 1.45194 * 109.47024 * 180.02562 * 17 15 5 19 19 C 1.34232 * 116.99979 * 180.02562 * 18 17 15 20 20 O 1.20829 * 120.00044 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.00154 * 180.02562 * 19 18 17 22 22 H 1.09003 * 115.55825 * 11.69739 * 21 19 18 23 23 C 1.53085 * 117.51047 * 157.42086 * 21 19 18 24 24 C 1.52559 * 117.50855 * 225.92008 * 21 19 18 25 25 C 1.53873 * 120.82301 * 142.33549 * 24 21 19 26 26 C 1.54993 * 104.06015 * 192.34826 * 25 24 21 27 27 C 1.54924 * 102.81871 * 37.57153 * 26 25 24 28 28 C 1.53476 * 121.09386 * 2.95995 * 24 21 19 29 29 H 1.08998 * 109.46869 * 14.07094 * 3 2 1 30 30 H 1.08999 * 109.46681 * 254.07206 * 3 2 1 31 31 H 1.09004 * 109.47507 * 59.99519 * 4 3 2 32 32 H 1.09006 * 109.47097 * 299.99815 * 4 3 2 33 33 H 1.08996 * 109.47192 * 330.00619 * 6 5 4 34 34 H 1.08997 * 109.47382 * 210.00146 * 6 5 4 35 35 H 0.97003 * 119.99446 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47350 * 300.00732 * 17 15 5 37 37 H 1.09004 * 109.46805 * 60.00589 * 17 15 5 38 38 H 1.09008 * 117.50856 * 214.90993 * 23 21 19 39 39 H 1.08997 * 117.51327 * 359.95645 * 23 21 19 40 40 H 1.09000 * 110.51463 * 310.99532 * 25 24 21 41 41 H 1.09006 * 110.51247 * 73.70692 * 25 24 21 42 42 H 1.08995 * 110.74628 * 279.24128 * 26 25 24 43 43 H 1.08999 * 110.89625 * 155.97512 * 26 25 24 44 44 H 1.08997 * 110.48133 * 203.59825 * 27 26 25 45 45 H 1.08993 * 110.48286 * 80.96338 * 27 26 25 46 46 H 1.09006 * 110.07237 * 263.32358 * 28 24 21 47 47 H 1.09001 * 110.06810 * 24.79301 * 28 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1176 1.0042 -1.0364 5 7 4.5825 1.0054 -1.0360 6 6 5.3160 0.0942 -1.9181 7 6 5.5670 0.7698 -3.2416 8 1 5.2151 1.7770 -3.4090 9 6 6.2461 0.1022 -4.2387 10 7 6.6742 -1.1246 -4.0348 11 14 6.5566 0.9394 -5.8793 12 1 7.3012 0.0163 -6.7730 13 1 5.2587 1.2966 -6.5063 14 1 7.3573 2.1712 -5.6628 15 6 5.2556 1.8446 -0.2240 16 8 6.4683 1.8452 -0.2234 17 6 4.5011 2.7821 0.6831 18 8 5.4438 3.5761 1.4505 19 6 4.9299 4.4670 2.3131 20 8 3.7319 4.5799 2.4228 21 6 5.8469 5.3272 3.1437 22 1 6.8970 5.3136 2.8516 23 6 5.2819 6.6409 3.6901 24 6 5.5299 5.4647 4.6297 25 6 6.6578 5.5160 5.6750 26 6 5.9253 5.3333 7.0287 27 6 4.8200 4.3036 6.6851 28 6 4.3613 4.6990 5.2650 29 1 2.9718 -0.9960 -0.2498 30 1 2.9712 0.2828 0.9882 31 1 2.7538 2.0009 -0.7866 32 1 2.7544 0.7220 -2.0246 33 1 4.7276 -0.8094 -2.0773 34 1 6.2685 -0.1688 -1.4580 35 1 7.1516 -1.5944 -4.7365 36 1 3.8743 3.4420 0.0833 37 1 3.8745 2.2043 1.3626 38 1 5.9605 7.4913 3.7579 39 1 4.2471 6.8832 3.4480 40 1 7.3670 4.7044 5.5120 41 1 7.1653 6.4802 5.6425 42 1 5.4865 6.2743 7.3603 43 1 6.6011 4.9361 7.7860 44 1 3.9919 4.3836 7.3894 45 1 5.2269 3.2924 6.6867 46 1 3.4809 5.3392 5.3209 47 1 4.1377 3.8062 4.6811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747731299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:57 Heat of formation + Delta-G solvation = -94.970416 kcal Electronic energy + Delta-G solvation = -28395.973176 eV Core-core repulsion = 24350.827127 eV Total energy + Delta-G solvation = -4045.146049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.74 seconds Orbital eigenvalues (eV) -41.99251 -40.82598 -39.69006 -38.07222 -37.44426 -36.72729 -35.14032 -34.89104 -32.25151 -30.90189 -29.66489 -28.64551 -26.82589 -25.59218 -25.38735 -24.33262 -21.90126 -21.43673 -20.36330 -19.83906 -18.92075 -18.85639 -18.38298 -17.85581 -17.67873 -17.44986 -16.80613 -16.47304 -16.21872 -16.03397 -15.82473 -15.68076 -14.96521 -14.61526 -14.53439 -14.30482 -14.02636 -13.89971 -13.71983 -13.62519 -13.59722 -13.36408 -13.21385 -13.04472 -12.96981 -12.75304 -12.52820 -12.19651 -12.12489 -12.09337 -11.96574 -11.86473 -11.75273 -11.69526 -11.55301 -11.41350 -11.35658 -10.78970 -10.68739 -10.58507 -9.59990 -8.18984 -6.30948 0.95305 1.23601 1.41002 1.43789 1.50273 1.56149 1.77092 1.80733 2.29283 2.44585 2.71643 3.01729 3.13632 3.39371 3.53263 3.53692 3.71502 3.78348 3.86596 3.96239 3.97046 4.06931 4.10988 4.25514 4.30290 4.49893 4.55676 4.70883 4.73834 4.77415 4.84291 4.87648 4.98085 4.99276 5.04166 5.05180 5.09998 5.22350 5.26605 5.27164 5.31708 5.37352 5.49773 5.55041 5.82309 6.10285 6.51861 6.57773 6.67442 6.77590 7.23518 7.41213 8.87936 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.002732 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.034996 B =10246.275405 C =11742.505801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.245 3.755 3 C -0.039 4.039 4 C 0.108 3.892 5 N -0.589 5.589 6 C 0.260 3.740 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.013 3.987 10 N -0.924 5.924 11 Si 0.957 3.043 12 H -0.282 1.282 13 H -0.263 1.263 14 H -0.280 1.280 15 C 0.506 3.494 16 O -0.568 6.568 17 C 0.054 3.946 18 O -0.347 6.347 19 C 0.491 3.509 20 O -0.524 6.524 21 C -0.180 4.180 22 H 0.142 0.858 23 C -0.116 4.116 24 C -0.088 4.088 25 C -0.090 4.090 26 C -0.117 4.117 27 C -0.124 4.124 28 C -0.094 4.094 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.008 0.992 35 H 0.266 0.734 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.137 0.863 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.768 13.132 20.804 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.073 4.073 3 C -0.080 4.080 4 C -0.017 4.017 5 N -0.321 5.321 6 C 0.140 3.860 7 C -0.583 4.583 8 H 0.072 0.928 9 C -0.186 4.186 10 N -0.564 5.564 11 Si 0.783 3.217 12 H -0.207 1.207 13 H -0.188 1.188 14 H -0.205 1.205 15 C 0.294 3.706 16 O -0.447 6.447 17 C -0.022 4.022 18 O -0.263 6.263 19 C 0.336 3.664 20 O -0.414 6.414 21 C -0.199 4.199 22 H 0.159 0.841 23 C -0.153 4.153 24 C -0.088 4.088 25 C -0.127 4.127 26 C -0.155 4.155 27 C -0.162 4.162 28 C -0.131 4.131 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.061 0.939 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.133 0.867 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.102 12.964 20.712 24.961 hybrid contribution 0.614 -0.246 -1.590 1.722 sum -4.488 12.718 19.121 23.399 Atomic orbital electron populations 1.81254 1.14382 1.10416 1.10406 1.29106 0.94920 0.91649 0.91603 1.19840 0.80220 1.04529 1.03444 1.21632 0.78688 1.00511 1.00843 1.47994 1.06914 1.38111 1.39073 1.18910 0.91678 0.88353 0.87088 1.21712 1.36671 1.00813 0.99073 0.92766 1.25702 0.95133 0.95490 1.02313 1.70011 1.38874 1.12344 1.35149 0.85621 0.78686 0.78143 0.79299 1.20700 1.18804 1.20526 1.20448 0.87694 0.81448 0.81058 1.90711 1.16017 1.69163 1.68772 1.22926 0.90521 0.94029 0.94764 1.86559 1.40874 1.48341 1.50509 1.23133 0.88113 0.77876 0.77271 1.90631 1.17187 1.67512 1.66055 1.21995 1.00294 1.01254 0.96401 0.84059 1.23322 1.03149 0.90274 0.98527 1.22038 0.99150 1.00314 0.87328 1.22025 0.95110 1.03227 0.92369 1.22480 0.97139 0.99427 0.96420 1.22390 0.99260 0.99461 0.95083 1.21698 0.96342 0.98781 0.96295 0.85418 0.84992 0.87953 0.88731 0.93883 0.97399 0.92484 0.86664 0.85563 0.84507 0.88077 0.90826 0.89283 0.90401 0.90150 0.90585 0.91813 0.91072 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.86 18.54 20.01 0.37 -13.49 16 2 C 0.24 5.47 15.43 89.44 1.38 6.85 16 3 C -0.04 -0.72 6.03 28.79 0.17 -0.55 16 4 C 0.11 2.62 5.17 86.38 0.45 3.07 16 5 N -0.59 -21.06 2.46 -826.17 -2.03 -23.09 16 6 C 0.26 12.34 5.16 85.63 0.44 12.78 16 7 C -0.54 -29.03 9.39 25.60 0.24 -28.79 16 8 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 9 C 0.01 0.72 5.46 84.65 0.46 1.18 16 10 N -0.92 -52.97 13.29 21.45 0.28 -52.68 16 11 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 15 C 0.51 19.00 7.75 87.66 0.68 19.68 16 16 O -0.57 -27.83 16.08 15.78 0.25 -27.58 16 17 C 0.05 1.50 4.50 71.24 0.32 1.82 16 18 O -0.35 -10.75 9.75 -45.08 -0.44 -11.19 16 19 C 0.49 12.90 6.98 71.24 0.50 13.40 16 20 O -0.52 -14.68 14.83 21.95 0.33 -14.35 16 21 C -0.18 -3.55 6.16 -11.66 -0.07 -3.62 16 22 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 23 C -0.12 -1.68 9.75 30.48 0.30 -1.39 16 24 C -0.09 -1.38 2.43 -52.02 -0.13 -1.51 16 25 C -0.09 -1.03 6.58 31.57 0.21 -0.82 16 26 C -0.12 -1.17 6.91 31.93 0.22 -0.94 16 27 C -0.12 -1.62 6.84 31.72 0.22 -1.40 16 28 C -0.09 -1.62 5.66 31.22 0.18 -1.44 16 29 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.13 1.81 7.22 -2.39 -0.02 1.79 16 31 H 0.10 1.98 6.44 -2.38 -0.02 1.96 16 32 H 0.09 2.46 8.07 -2.38 -0.02 2.44 16 33 H 0.04 1.99 8.07 -2.39 -0.02 1.97 16 34 H 0.01 0.44 7.42 -2.39 -0.02 0.42 16 35 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.12 2.78 7.39 -2.39 -0.02 2.76 16 37 H 0.13 2.65 7.18 -2.38 -0.02 2.63 16 38 H 0.14 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.10 1.66 7.85 -2.39 -0.02 1.64 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 41 H 0.09 0.73 8.11 -2.38 -0.02 0.71 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 47 H 0.05 0.99 6.82 -2.39 -0.02 0.98 16 Total: -1.00 -75.47 399.97 7.33 -68.14 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.97 Total: 10.64 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 5.56 Total: 18.31 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -1.37 Total: -89.27 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: 0.14 Total: -53.12 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -75.47 7.33 -68.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747731299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.835 kcal (2) G-P(sol) polarization free energy of solvation -75.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.75 seconds