Wall clock time and date at job start Tue Mar 31 2020 17:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47275 * 2 1 4 4 C 1.50696 * 109.47015 * 120.00187 * 2 1 3 5 5 N 1.28004 * 120.00602 * 359.97438 * 4 2 1 6 6 N 1.40104 * 120.00495 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99836 * 180.02562 * 6 5 4 8 8 S 1.71202 * 119.99572 * 179.97438 * 7 6 5 9 9 N 1.34778 * 120.00506 * 359.97438 * 7 6 5 10 10 C 1.46496 * 119.99813 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46662 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.47163 * 180.02562 * 11 10 9 13 13 C 1.38225 * 119.61903 * 124.72524 * 12 11 10 14 14 C 1.38628 * 119.15868 * 179.75305 * 13 12 11 15 15 C 1.38681 * 118.42043 * 0.51112 * 14 13 12 16 16 C 1.38179 * 119.15955 * 359.73317 * 15 14 13 17 17 N 1.31858 * 119.61572 * 305.00069 * 12 11 10 18 18 C 1.52999 * 109.46757 * 240.00084 * 2 1 3 19 19 C 1.50708 * 109.47053 * 60.00065 * 18 2 1 20 20 H 1.08000 * 119.99777 * 359.97438 * 19 18 2 21 21 C 1.37874 * 119.99578 * 179.97438 * 19 18 2 22 22 N 1.31513 * 120.00634 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99611 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46913 * 60.00104 * 23 21 19 25 25 H 1.48499 * 109.47121 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46793 * 299.99649 * 23 21 19 27 27 H 1.09009 * 109.47143 * 299.99750 * 1 2 3 28 28 H 1.08994 * 109.47545 * 59.99628 * 1 2 3 29 29 H 1.08994 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47430 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47000 * 300.00252 * 3 2 1 32 32 H 1.09003 * 109.47261 * 60.00103 * 3 2 1 33 33 H 1.08006 * 119.99414 * 179.97438 * 4 2 1 34 34 H 0.97001 * 119.99777 * 359.97438 * 6 5 4 35 35 H 0.96998 * 119.99136 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.47282 * 60.00376 * 10 9 7 37 37 H 1.08995 * 109.47185 * 299.99757 * 10 9 7 38 38 H 1.08997 * 109.47394 * 59.99835 * 11 10 9 39 39 H 1.09004 * 109.47644 * 299.99906 * 11 10 9 40 40 H 1.07994 * 120.42134 * 359.97438 * 13 12 11 41 41 H 1.08000 * 120.79027 * 180.26248 * 14 13 12 42 42 H 1.07997 * 120.41814 * 179.70894 * 15 14 13 43 43 H 1.08004 * 119.61107 * 180.02562 * 16 15 14 44 44 H 1.09006 * 109.47332 * 179.97438 * 18 2 1 45 45 H 1.08999 * 109.47700 * 299.99918 * 18 2 1 46 46 H 0.96996 * 120.00037 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.2006 -1.1965 2.0733 6 7 1.6676 -1.8566 3.2175 7 6 0.7918 -2.3688 4.1046 8 16 1.3625 -3.1759 5.5024 9 7 -0.5333 -2.2457 3.8914 10 6 -1.4852 -2.8020 4.8560 11 6 -2.9130 -2.5278 4.3796 12 6 -3.8924 -3.0995 5.3722 13 6 -4.8567 -2.2809 5.9295 14 6 -5.7559 -2.8179 6.8377 15 6 -5.6444 -4.1619 7.1609 16 6 -4.6512 -4.9170 6.5669 17 7 -3.8159 -4.3736 5.7031 18 6 2.0399 -0.7212 -1.2493 19 6 1.5375 -0.0107 -2.4797 20 1 0.9163 0.8671 -2.3806 21 6 1.8710 -0.4815 -3.7320 22 7 2.6270 -1.5508 -3.8528 23 14 1.2477 0.3987 -5.2572 24 1 1.7417 1.7991 -5.2571 25 1 1.7427 -0.3012 -6.4697 26 1 -0.2374 0.3975 -5.2572 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.0942 -0.8094 1.4010 34 1 2.6213 -1.9455 3.3708 35 1 -0.8566 -1.7880 3.0996 36 1 -1.3307 -2.3358 5.8292 37 1 -1.3308 -3.8777 4.9398 38 1 -3.0673 -2.9942 3.4066 39 1 -3.0678 -1.4521 4.2955 40 1 -4.9111 -1.2370 5.6582 41 1 -6.5226 -2.2034 7.2859 42 1 -6.3249 -4.6126 7.8681 43 1 -4.5579 -5.9645 6.8130 44 1 3.1300 -0.7209 -1.2496 45 1 1.6766 -1.7489 -1.2494 46 1 2.8619 -1.8817 -4.7338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755682518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:54 Heat of formation + Delta-G solvation = 71.661896 kcal Electronic energy + Delta-G solvation = -24969.133729 eV Core-core repulsion = 21406.259021 eV Total energy + Delta-G solvation = -3562.874708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 11.01 seconds Orbital eigenvalues (eV) -40.59060 -39.25069 -37.69469 -35.99369 -33.79684 -32.76772 -32.56686 -31.45872 -29.10396 -27.25404 -26.67513 -25.00977 -24.48801 -23.79495 -23.27998 -21.92988 -21.57291 -19.12386 -18.16736 -17.47127 -17.14269 -16.63239 -16.41447 -16.06157 -15.65114 -15.50610 -15.12065 -14.74770 -14.35049 -13.98188 -13.95031 -13.67437 -13.35261 -13.19678 -13.11368 -12.35643 -12.23110 -12.17227 -12.02618 -11.64227 -11.29884 -11.25474 -11.12903 -11.03544 -10.94062 -10.78836 -10.42877 -10.32618 -10.23483 -10.00019 -9.76769 -9.57657 -9.35134 -9.17940 -8.84503 -8.49308 -7.80146 -7.59956 -6.13551 -4.16225 0.71710 0.91985 1.19083 1.75901 2.33946 2.67064 2.90101 3.24398 3.30622 3.31438 3.43559 3.91440 4.30494 4.34183 4.48839 4.58874 4.71174 4.75842 4.86297 4.89685 5.05838 5.10085 5.23023 5.29795 5.38088 5.56100 5.58921 5.67003 5.69334 5.79975 5.81425 5.87298 6.01495 6.17590 6.26831 6.32472 6.40210 6.50621 6.56911 6.80455 6.84464 6.92764 7.12006 7.42127 7.51002 7.64743 7.82518 7.94668 8.21549 8.87313 9.47991 10.97622 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013033 B = 0.002170 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.824793 B =12901.295352 C =14178.424336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.018 4.018 3 C -0.124 4.124 4 C 0.150 3.850 5 N -0.306 5.306 6 N -0.546 5.546 7 C 0.602 3.398 8 S -0.654 6.654 9 N -0.667 5.667 10 C 0.131 3.869 11 C -0.085 4.085 12 C 0.136 3.864 13 C -0.167 4.167 14 C -0.074 4.074 15 C -0.178 4.178 16 C 0.105 3.895 17 N -0.476 5.476 18 C 0.040 3.960 19 C -0.516 4.516 20 H 0.062 0.938 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.892 3.108 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.277 1.277 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.111 0.889 34 H 0.411 0.589 35 H 0.412 0.588 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.157 0.843 44 H 0.022 0.978 45 H 0.020 0.980 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.350 0.807 17.830 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.021 4.021 3 C -0.183 4.183 4 C -0.065 4.065 5 N -0.109 5.109 6 N -0.267 5.267 7 C 0.240 3.760 8 S -0.530 6.530 9 N -0.296 5.296 10 C 0.007 3.993 11 C -0.123 4.123 12 C -0.002 4.002 13 C -0.186 4.186 14 C -0.100 4.100 15 C -0.198 4.198 16 C -0.052 4.052 17 N -0.185 5.185 18 C 0.001 3.999 19 C -0.554 4.554 20 H 0.080 0.920 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.719 3.281 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.202 1.202 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.128 0.872 34 H 0.255 0.745 35 H 0.251 0.749 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.175 0.825 44 H 0.040 0.960 45 H 0.038 0.962 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.408 -0.527 18.525 23.474 hybrid contribution -0.021 1.402 -1.545 2.086 sum -14.428 0.875 16.980 22.299 Atomic orbital electron populations 1.21641 0.93778 1.01624 1.00714 1.19965 0.96693 0.95031 0.90420 1.21733 1.00804 0.94226 1.01488 1.26841 0.96900 0.89854 0.92880 1.74211 1.29149 1.11349 0.96225 1.46435 1.08551 1.53064 1.18675 1.21864 0.83321 0.82394 0.88396 1.93556 1.83341 1.56904 1.19153 1.44921 1.03151 1.55162 1.26339 1.21650 0.84524 1.01619 0.91548 1.20753 0.92033 1.01457 0.98106 1.20874 0.94398 0.89639 0.95305 1.21993 0.96659 1.01332 0.98657 1.21600 0.97628 0.95303 0.95440 1.22179 1.00509 0.95139 1.01942 1.22795 0.90286 1.00362 0.91741 1.67487 1.25158 1.12384 1.13457 1.19154 0.96540 0.95349 0.88808 1.21063 1.31783 1.12389 0.90139 0.91984 1.25004 0.95136 0.95012 0.99182 1.69938 1.36543 1.22842 1.23846 0.86663 0.79217 0.79759 0.82412 1.20175 1.21353 1.20223 0.94461 0.91244 0.93077 0.92853 0.90246 0.94492 0.87208 0.74538 0.74897 0.89690 0.88216 0.88808 0.89363 0.84632 0.84756 0.84750 0.82537 0.96018 0.96194 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 7.45 37.16 0.28 -1.65 16 2 C -0.02 -0.30 0.75 -155.66 -0.12 -0.42 16 3 C -0.12 -1.89 8.20 37.16 0.30 -1.58 16 4 C 0.15 2.19 9.56 -13.88 -0.13 2.05 16 5 N -0.31 -4.33 9.01 32.67 0.29 -4.04 16 6 N -0.55 -7.53 6.25 29.96 0.19 -7.34 16 7 C 0.60 8.79 7.97 -86.92 -0.69 8.10 16 8 S -0.65 -11.59 29.32 -107.50 -3.15 -14.74 16 9 N -0.67 -8.05 5.52 -62.04 -0.34 -8.40 16 10 C 0.13 1.42 4.99 -4.04 -0.02 1.40 16 11 C -0.09 -0.70 5.73 -27.88 -0.16 -0.86 16 12 C 0.14 1.25 6.18 -82.58 -0.51 0.74 16 13 C -0.17 -1.21 9.71 -39.44 -0.38 -1.60 16 14 C -0.07 -0.47 10.18 -39.27 -0.40 -0.87 16 15 C -0.18 -1.14 10.11 -39.44 -0.40 -1.54 16 16 C 0.11 0.86 11.18 -17.55 -0.20 0.67 16 17 N -0.48 -4.99 9.88 -9.47 -0.09 -5.09 16 18 C 0.04 0.87 4.02 -27.88 -0.11 0.76 16 19 C -0.52 -12.59 7.65 -34.44 -0.26 -12.85 16 20 H 0.06 1.44 5.68 -52.49 -0.30 1.14 16 21 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 22 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 23 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H 0.04 0.52 8.06 -51.92 -0.42 0.10 16 28 H 0.07 1.19 6.62 -51.93 -0.34 0.85 16 29 H 0.05 0.85 8.06 -51.93 -0.42 0.43 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.31 6.62 -51.93 -0.34 0.96 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.11 1.41 8.00 -52.48 -0.42 0.99 16 34 H 0.41 5.25 8.61 -182.59 -1.57 3.68 16 35 H 0.41 4.62 7.51 -40.82 -0.31 4.31 16 36 H 0.08 1.00 7.99 -51.93 -0.42 0.58 16 37 H 0.10 1.30 7.79 -51.93 -0.40 0.89 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.56 7.87 -51.93 -0.41 0.15 16 40 H 0.14 0.70 7.95 -52.49 -0.42 0.28 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 43 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 397.24 15.07 5.99 5.99 Total: -1.00 -31.33 397.24 -12.59 -43.92 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -8.28 Total: 5.07 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.90 Total: -6.22 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.78 Total: -49.04 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: -11.59 SS G_CDS: -3.15 Total: -14.74 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.33 -12.59 -43.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755682518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.586 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.01 seconds