Wall clock time and date at job start Tue Mar 31 2020 17:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47275 * 2 1 4 4 C 1.50696 * 109.47015 * 120.00187 * 2 1 3 5 5 N 1.28004 * 120.00602 * 359.97438 * 4 2 1 6 6 N 1.40104 * 120.00495 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99836 * 180.02562 * 6 5 4 8 8 S 1.71202 * 119.99572 * 179.97438 * 7 6 5 9 9 N 1.34778 * 120.00506 * 359.97438 * 7 6 5 10 10 C 1.46496 * 119.99813 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46662 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.47163 * 180.02562 * 11 10 9 13 13 C 1.38225 * 119.61903 * 124.72524 * 12 11 10 14 14 C 1.38628 * 119.15868 * 179.75305 * 13 12 11 15 15 C 1.38681 * 118.42043 * 0.51112 * 14 13 12 16 16 C 1.38179 * 119.15955 * 359.73317 * 15 14 13 17 17 N 1.31858 * 119.61572 * 305.00069 * 12 11 10 18 18 C 1.52999 * 109.46757 * 240.00084 * 2 1 3 19 19 C 1.50708 * 109.47053 * 60.00065 * 18 2 1 20 20 H 1.08000 * 119.99777 * 359.97438 * 19 18 2 21 21 C 1.37874 * 119.99578 * 179.97438 * 19 18 2 22 22 N 1.31513 * 120.00634 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99611 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46913 * 60.00104 * 23 21 19 25 25 H 1.48499 * 109.47121 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46793 * 299.99649 * 23 21 19 27 27 H 1.09009 * 109.47143 * 299.99750 * 1 2 3 28 28 H 1.08994 * 109.47545 * 59.99628 * 1 2 3 29 29 H 1.08994 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47430 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47000 * 300.00252 * 3 2 1 32 32 H 1.09003 * 109.47261 * 60.00103 * 3 2 1 33 33 H 1.08006 * 119.99414 * 179.97438 * 4 2 1 34 34 H 0.97001 * 119.99777 * 359.97438 * 6 5 4 35 35 H 0.96998 * 119.99136 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.47282 * 60.00376 * 10 9 7 37 37 H 1.08995 * 109.47185 * 299.99757 * 10 9 7 38 38 H 1.08997 * 109.47394 * 59.99835 * 11 10 9 39 39 H 1.09004 * 109.47644 * 299.99906 * 11 10 9 40 40 H 1.07994 * 120.42134 * 359.97438 * 13 12 11 41 41 H 1.08000 * 120.79027 * 180.26248 * 14 13 12 42 42 H 1.07997 * 120.41814 * 179.70894 * 15 14 13 43 43 H 1.08004 * 119.61107 * 180.02562 * 16 15 14 44 44 H 1.09006 * 109.47332 * 179.97438 * 18 2 1 45 45 H 1.08999 * 109.47700 * 299.99918 * 18 2 1 46 46 H 0.96996 * 120.00037 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.2006 -1.1965 2.0733 6 7 1.6676 -1.8566 3.2175 7 6 0.7918 -2.3688 4.1046 8 16 1.3625 -3.1759 5.5024 9 7 -0.5333 -2.2457 3.8914 10 6 -1.4852 -2.8020 4.8560 11 6 -2.9130 -2.5278 4.3796 12 6 -3.8924 -3.0995 5.3722 13 6 -4.8567 -2.2809 5.9295 14 6 -5.7559 -2.8179 6.8377 15 6 -5.6444 -4.1619 7.1609 16 6 -4.6512 -4.9170 6.5669 17 7 -3.8159 -4.3736 5.7031 18 6 2.0399 -0.7212 -1.2493 19 6 1.5375 -0.0107 -2.4797 20 1 0.9163 0.8671 -2.3806 21 6 1.8710 -0.4815 -3.7320 22 7 2.6270 -1.5508 -3.8528 23 14 1.2477 0.3987 -5.2572 24 1 1.7417 1.7991 -5.2571 25 1 1.7427 -0.3012 -6.4697 26 1 -0.2374 0.3975 -5.2572 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.0942 -0.8094 1.4010 34 1 2.6213 -1.9455 3.3708 35 1 -0.8566 -1.7880 3.0996 36 1 -1.3307 -2.3358 5.8292 37 1 -1.3308 -3.8777 4.9398 38 1 -3.0673 -2.9942 3.4066 39 1 -3.0678 -1.4521 4.2955 40 1 -4.9111 -1.2370 5.6582 41 1 -6.5226 -2.2034 7.2859 42 1 -6.3249 -4.6126 7.8681 43 1 -4.5579 -5.9645 6.8130 44 1 3.1300 -0.7209 -1.2496 45 1 1.6766 -1.7489 -1.2494 46 1 2.8619 -1.8817 -4.7338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755682518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:53 Heat of formation + Delta-G solvation = 54.624452 kcal Electronic energy + Delta-G solvation = -24969.872528 eV Core-core repulsion = 21406.259021 eV Total energy + Delta-G solvation = -3563.613507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.17209 -40.40731 -38.94988 -37.15988 -34.90284 -34.17077 -33.26056 -32.61236 -29.88595 -29.00015 -27.94320 -26.26318 -25.40630 -24.82875 -24.31785 -22.96291 -22.50537 -20.39695 -19.29536 -18.67087 -18.29262 -17.74865 -17.29510 -17.04339 -16.56880 -16.55411 -16.28217 -15.98303 -15.43650 -15.33698 -14.88127 -14.58372 -14.57147 -14.19415 -13.98565 -13.78223 -13.24825 -13.08648 -12.95250 -12.74885 -12.72779 -12.62626 -12.58984 -12.53046 -12.28680 -12.10577 -12.05832 -11.70944 -11.36469 -11.12327 -10.92610 -10.78148 -10.48061 -10.34977 -9.99971 -9.90547 -9.16141 -9.00258 -8.12512 -6.19258 -0.01947 0.16754 0.39912 0.49257 1.13496 1.46850 1.47454 1.49509 1.54650 1.83725 2.47022 2.86215 3.23453 3.34482 3.67281 3.71829 3.83762 3.96018 4.03918 4.12575 4.27026 4.28117 4.30279 4.34041 4.45590 4.51102 4.70274 4.77657 4.81621 4.91282 4.92737 5.01753 5.07549 5.15018 5.17979 5.26538 5.30990 5.39206 5.44631 5.52646 5.54250 5.56906 5.77030 5.81819 5.90577 6.08458 6.29952 6.77142 6.95130 7.07952 7.48674 8.99107 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013033 B = 0.002170 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.824793 B =12901.295352 C =14178.424336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.011 4.011 3 C -0.120 4.120 4 C 0.148 3.852 5 N -0.299 5.299 6 N -0.539 5.539 7 C 0.613 3.387 8 S -0.717 6.717 9 N -0.649 5.649 10 C 0.138 3.862 11 C -0.075 4.075 12 C 0.112 3.888 13 C -0.169 4.169 14 C -0.078 4.078 15 C -0.174 4.174 16 C 0.083 3.917 17 N -0.514 5.514 18 C 0.045 3.955 19 C -0.512 4.512 20 H 0.075 0.925 21 C -0.001 4.001 22 N -0.936 5.936 23 Si 0.953 3.047 24 H -0.265 1.265 25 H -0.295 1.295 26 H -0.269 1.269 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.131 0.869 34 H 0.417 0.583 35 H 0.421 0.579 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.158 0.842 41 H 0.164 0.836 42 H 0.161 0.839 43 H 0.168 0.832 44 H 0.002 0.998 45 H -0.013 1.013 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.398 3.011 18.552 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.015 4.015 3 C -0.179 4.179 4 C -0.067 4.067 5 N -0.102 5.102 6 N -0.260 5.260 7 C 0.248 3.752 8 S -0.593 6.593 9 N -0.277 5.277 10 C 0.014 3.986 11 C -0.114 4.114 12 C -0.026 4.026 13 C -0.188 4.188 14 C -0.103 4.103 15 C -0.194 4.194 16 C -0.074 4.074 17 N -0.224 5.224 18 C 0.007 3.993 19 C -0.550 4.550 20 H 0.093 0.907 21 C -0.198 4.198 22 N -0.577 5.577 23 Si 0.779 3.221 24 H -0.190 1.190 25 H -0.221 1.221 26 H -0.194 1.194 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.148 0.852 34 H 0.261 0.739 35 H 0.261 0.739 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.176 0.824 41 H 0.181 0.819 42 H 0.179 0.821 43 H 0.186 0.814 44 H 0.020 0.980 45 H 0.005 0.995 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.489 1.705 19.243 25.399 hybrid contribution 0.541 0.703 -1.730 1.945 sum -15.948 2.408 17.513 23.808 Atomic orbital electron populations 1.21581 0.93037 1.01167 1.01463 1.19714 0.97204 0.95646 0.88889 1.21683 1.01059 0.92904 1.02209 1.26672 0.97999 0.89738 0.92284 1.74164 1.29117 1.10875 0.96089 1.46310 1.08850 1.52584 1.18286 1.21470 0.84111 0.82068 0.87518 1.93685 1.84135 1.59634 1.21826 1.44992 1.02387 1.53815 1.26459 1.21591 0.85874 0.99947 0.91144 1.20717 0.89844 1.02987 0.97806 1.21044 0.95529 0.89747 0.96308 1.22280 0.96056 1.02202 0.98293 1.22026 0.97850 0.95567 0.94890 1.22503 0.99964 0.95318 1.01566 1.23139 0.90858 1.01361 0.92025 1.67427 1.26595 1.13504 1.14833 1.18982 0.95170 0.94033 0.91154 1.21529 1.30504 1.12215 0.90800 0.90705 1.25851 0.95688 0.95794 1.02485 1.70082 1.38666 1.24807 1.24123 0.85681 0.78893 0.78932 0.78632 1.18996 1.22133 1.19414 0.91662 0.92471 0.94137 0.92550 0.91576 0.91634 0.85202 0.73850 0.73905 0.90384 0.90573 0.88976 0.86827 0.82418 0.81871 0.82104 0.81447 0.98012 0.99476 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 7.45 71.98 0.54 -2.91 16 2 C -0.01 -0.36 0.75 -52.93 -0.04 -0.40 16 3 C -0.12 -3.36 8.20 71.98 0.59 -2.77 16 4 C 0.15 4.01 9.56 88.67 0.85 4.86 16 5 N -0.30 -7.84 9.01 -50.47 -0.45 -8.29 16 6 N -0.54 -14.08 6.25 -59.11 -0.37 -14.45 16 7 C 0.61 17.43 7.97 179.05 1.43 18.86 16 8 S -0.72 -25.74 29.32 -56.49 -1.66 -27.39 16 9 N -0.65 -14.93 5.52 -350.18 -1.93 -16.86 16 10 C 0.14 2.98 4.99 86.38 0.43 3.41 16 11 C -0.08 -1.16 5.73 29.85 0.17 -0.99 16 12 C 0.11 1.96 6.18 42.55 0.26 2.22 16 13 C -0.17 -2.11 9.71 22.36 0.22 -1.89 16 14 C -0.08 -0.79 10.18 22.47 0.23 -0.56 16 15 C -0.17 -1.92 10.11 22.36 0.23 -1.70 16 16 C 0.08 1.33 11.18 84.67 0.95 2.28 16 17 N -0.51 -10.89 9.88 -183.88 -1.82 -12.71 16 18 C 0.04 1.99 4.02 29.85 0.12 2.11 16 19 C -0.51 -24.88 7.65 25.60 0.20 -24.68 16 20 H 0.07 3.38 5.68 -2.91 -0.02 3.36 16 21 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 22 N -0.94 -53.36 13.29 21.45 0.28 -53.08 16 23 Si 0.95 40.98 29.54 68.60 2.03 43.00 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.30 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 27 H 0.06 1.59 8.06 -2.38 -0.02 1.57 16 28 H 0.06 1.85 6.62 -2.39 -0.02 1.83 16 29 H 0.04 1.28 8.06 -2.39 -0.02 1.26 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 2.03 6.62 -2.38 -0.02 2.01 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.13 3.05 8.00 -2.91 -0.02 3.02 16 34 H 0.42 10.11 8.61 -213.32 -1.84 8.27 16 35 H 0.42 8.54 7.51 -92.71 -0.70 7.85 16 36 H 0.08 1.83 7.99 -2.39 -0.02 1.81 16 37 H 0.08 2.06 7.79 -2.39 -0.02 2.04 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.11 1.14 7.87 -2.39 -0.02 1.12 16 40 H 0.16 1.14 7.95 -2.91 -0.02 1.12 16 41 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 42 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 43 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 44 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 45 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 46 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -69.67 397.24 1.16 -68.50 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -1.54 Total: 23.02 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 6.62 Total: -1.75 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -4.29 Total: -105.38 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 16 Polarization: -25.74 SS G_CDS: -1.66 Total: -27.39 kcal Total: -69.67 1.16 -68.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755682518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.126 kcal (2) G-P(sol) polarization free energy of solvation -69.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds