Wall clock time and date at job start Tue Mar 31 2020 20:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00091 * 2 1 4 4 C 1.52995 * 109.47026 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.47245 * 65.00193 * 4 3 2 6 6 C 1.35895 * 117.00340 * 179.97438 * 5 4 3 7 7 C 1.38736 * 120.06032 * 179.97438 * 6 5 4 8 8 C 1.38136 * 119.94611 * 180.02562 * 7 6 5 9 9 C 1.38265 * 120.05760 * 0.02624 * 8 7 6 10 10 C 1.50698 * 119.94599 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47576 * 89.99542 * 10 9 8 12 12 O 1.20821 * 119.99880 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00064 * 179.97438 * 11 10 9 14 14 C 1.45201 * 116.99622 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46827 * 180.02562 * 14 13 11 16 16 C 1.50703 * 115.55099 * 294.88178 * 15 14 13 17 17 H 1.07997 * 120.00062 * 99.47690 * 16 15 14 18 18 C 1.37880 * 120.00008 * 279.20999 * 16 15 14 19 19 N 1.31516 * 119.99699 * 355.32197 * 18 16 15 20 20 Si 1.86789 * 120.00071 * 175.33046 * 18 16 15 21 21 H 1.48502 * 109.47695 * 89.99692 * 20 18 16 22 22 H 1.48507 * 109.47282 * 209.99459 * 20 18 16 23 23 H 1.48504 * 109.47557 * 329.99450 * 20 18 16 24 24 C 1.53001 * 117.51891 * 80.58261 * 15 14 13 25 25 C 1.53000 * 60.00059 * 107.48346 * 24 15 14 26 26 C 1.38264 * 120.11231 * 0.24802 * 9 8 7 27 27 C 1.38145 * 120.05170 * 359.45377 * 26 9 8 28 28 H 1.08999 * 109.47686 * 299.99993 * 1 2 3 29 29 H 1.09006 * 109.47017 * 59.99774 * 1 2 3 30 30 H 1.09005 * 109.47469 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47108 * 59.99593 * 3 2 1 32 32 H 1.09001 * 109.47027 * 300.00244 * 3 2 1 33 33 H 1.09006 * 109.47460 * 304.99811 * 4 3 2 34 34 H 1.09001 * 109.47015 * 185.00297 * 4 3 2 35 35 H 1.07998 * 120.02581 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.97391 * 180.02562 * 8 7 6 37 37 H 1.09008 * 109.47185 * 329.99436 * 10 9 8 38 38 H 1.09004 * 109.47325 * 209.99771 * 10 9 8 39 39 H 1.08997 * 109.47463 * 60.00404 * 14 13 11 40 40 H 1.08998 * 109.47338 * 299.99974 * 14 13 11 41 41 H 0.96998 * 119.99922 * 180.02562 * 19 18 16 42 42 H 1.09005 * 117.49874 * 214.96807 * 24 15 14 43 43 H 1.08998 * 117.50103 * 359.97438 * 24 15 14 44 44 H 1.09002 * 117.49646 * 252.51586 * 25 24 15 45 45 H 1.08997 * 117.51925 * 107.47993 * 25 24 15 46 46 H 1.07999 * 119.97428 * 179.70734 * 26 9 8 47 47 H 1.08006 * 120.02466 * 180.24746 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3030 0.3982 -1.3812 7 6 5.7906 -0.1843 -2.5421 8 6 7.1502 -0.3676 -2.7031 9 6 8.0250 0.0283 -1.7083 10 6 9.5078 -0.1734 -1.8864 11 6 10.1046 1.0427 -2.5467 12 8 9.3984 1.9775 -2.8420 13 8 11.4208 1.0877 -2.8059 14 6 11.9264 2.2905 -3.4431 15 6 13.4355 2.1582 -3.6576 16 6 14.2664 2.0843 -2.4025 17 1 14.6112 1.1276 -2.0387 18 6 14.5910 3.2384 -1.7216 19 7 14.2548 4.4100 -2.2157 20 14 15.5085 3.1381 -0.0976 21 1 16.9711 3.1727 -0.3523 22 1 15.1278 4.2906 0.7581 23 1 15.1561 1.8714 0.5927 24 6 13.9095 1.3500 -4.8671 25 6 14.0429 2.8741 -4.8657 26 6 7.5413 0.6039 -0.5479 27 6 6.1829 0.7951 -0.3847 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5684 0.8427 34 1 3.9784 2.1765 0.0903 35 1 5.1076 -0.4941 -3.3192 36 1 7.5303 -0.8207 -3.6068 37 1 9.6828 -1.0491 -2.5115 38 1 9.9736 -0.3234 -0.9124 39 1 11.7237 3.1517 -2.8064 40 1 11.4335 2.4264 -4.4057 41 1 14.4835 5.2220 -1.7369 42 1 14.8223 0.7648 -4.7551 43 1 13.1461 0.9119 -5.5102 44 1 13.3672 3.4391 -5.5079 45 1 15.0432 3.2920 -4.7525 46 1 8.2263 0.9081 0.2297 47 1 5.8058 1.2484 0.5202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759538152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:45 Heat of formation + Delta-G solvation = -121.664504 kcal Electronic energy + Delta-G solvation = -27506.018469 eV Core-core repulsion = 23427.422126 eV Total energy + Delta-G solvation = -4078.596343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 3.90 seconds Orbital eigenvalues (eV) -40.41186 -39.67761 -38.41946 -37.48322 -36.65510 -35.15073 -32.49487 -31.96564 -31.22088 -30.63285 -27.78243 -26.79197 -26.24825 -25.14069 -23.95945 -22.36434 -21.65930 -21.13258 -20.02541 -19.24544 -18.48975 -17.23678 -16.99760 -16.60481 -16.40450 -16.11229 -15.72676 -15.48086 -15.43883 -15.12596 -14.85626 -14.58569 -14.30886 -13.82661 -13.54449 -13.45476 -13.08888 -13.00332 -12.55063 -12.42379 -12.06297 -12.00280 -11.78143 -11.70612 -11.59224 -11.49337 -11.03541 -10.95834 -10.87589 -10.85205 -10.53589 -10.26821 -10.15851 -9.96635 -9.82992 -9.47210 -9.01544 -8.92275 -8.45883 -8.21556 -8.11485 -6.06443 -4.11848 1.31644 1.35718 2.81940 2.94802 3.27675 3.27957 3.34011 3.35281 3.39222 3.88309 4.38962 4.43974 4.64803 4.72199 4.74354 4.77200 4.83573 4.90454 4.94785 5.00284 5.14875 5.22253 5.23906 5.25519 5.26393 5.32000 5.48428 5.59221 5.63457 5.70154 5.99178 6.00142 6.19285 6.25404 6.29458 6.33955 6.53672 6.58799 6.63639 6.67470 6.71762 6.75759 7.04804 7.27959 7.29941 7.37019 7.50890 7.86311 8.37039 8.49704 8.89290 9.53546 11.02655 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.001975 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.427927 B =14170.953756 C =14876.624851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.063 3.937 4 C 0.060 3.940 5 O -0.309 6.309 6 C 0.128 3.872 7 C -0.150 4.150 8 C -0.063 4.063 9 C -0.105 4.105 10 C -0.072 4.072 11 C 0.452 3.548 12 O -0.516 6.516 13 O -0.338 6.338 14 C 0.118 3.882 15 C 0.035 3.965 16 C -0.487 4.487 17 H 0.063 0.937 18 C 0.067 3.933 19 N -0.882 5.882 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.205 4.205 25 C -0.145 4.145 26 C -0.061 4.061 27 C -0.208 4.208 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.261 0.739 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.126 0.874 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.942 -8.385 4.252 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.222 6.222 6 C 0.083 3.917 7 C -0.169 4.169 8 C -0.081 4.081 9 C -0.105 4.105 10 C -0.110 4.110 11 C 0.295 3.705 12 O -0.406 6.406 13 O -0.254 6.254 14 C 0.044 3.956 15 C 0.035 3.965 16 C -0.525 4.525 17 H 0.081 0.919 18 C -0.136 4.136 19 N -0.518 5.518 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.242 4.242 25 C -0.182 4.182 26 C -0.080 4.080 27 C -0.227 4.227 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.107 0.893 46 H 0.144 0.856 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.149 -8.083 4.061 24.854 hybrid contribution 0.323 0.734 1.044 1.317 sum -22.826 -7.349 5.106 24.518 Atomic orbital electron populations 1.22765 0.80820 1.03013 0.99986 1.87971 1.19826 1.27142 1.95416 1.22585 0.91615 0.85744 1.01462 1.22828 0.93572 0.98405 0.86708 1.86099 1.20249 1.76960 1.38942 1.18980 0.82107 0.95938 0.94677 1.20330 0.95436 1.04245 0.96882 1.20812 0.91939 0.97534 0.97844 1.19248 0.93750 1.02252 0.95287 1.20230 0.91614 0.95788 1.03349 1.23452 0.81799 0.88569 0.76725 1.90631 1.62093 1.38098 1.49743 1.86522 1.23014 1.44329 1.71516 1.22832 0.94588 0.83694 0.94446 1.18795 0.88820 0.99337 0.89593 1.20378 1.31897 0.93021 1.07210 0.91905 1.25024 0.95547 0.95378 0.97639 1.70002 1.46366 0.97240 1.38227 0.86591 0.79920 0.77753 0.83757 1.20620 1.21207 1.19692 1.22967 1.02215 0.94492 1.04520 1.22549 1.01912 0.92241 1.01531 1.20821 0.94629 0.95510 0.97000 1.21144 0.94065 1.07467 0.99997 0.94060 0.93898 0.89451 0.91084 0.91992 0.91033 0.90302 0.85247 0.85315 0.87150 0.87005 0.90876 0.94314 0.92944 0.90109 0.91548 0.91748 0.89303 0.85628 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.61 10.67 -40.09 -0.43 -4.03 16 3 C 0.06 0.46 6.32 37.15 0.23 0.69 16 4 C 0.06 0.52 5.12 37.15 0.19 0.71 16 5 O -0.31 -3.72 10.10 -24.27 -0.25 -3.96 16 6 C 0.13 1.63 6.69 -39.21 -0.26 1.37 16 7 C -0.15 -1.89 9.99 -39.43 -0.39 -2.28 16 8 C -0.06 -0.80 9.69 -39.61 -0.38 -1.19 16 9 C -0.11 -1.43 4.38 -104.60 -0.46 -1.88 16 10 C -0.07 -0.98 5.94 -29.03 -0.17 -1.15 16 11 C 0.45 8.57 7.95 36.01 0.29 8.86 16 12 O -0.52 -11.20 15.78 -18.75 -0.30 -11.50 16 13 O -0.34 -7.37 10.16 -39.26 -0.40 -7.77 16 14 C 0.12 2.81 5.29 37.16 0.20 3.01 16 15 C 0.04 0.87 1.62 -155.66 -0.25 0.62 16 16 C -0.49 -13.26 8.75 -34.44 -0.30 -13.56 16 17 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 18 C 0.07 1.83 5.44 -17.82 -0.10 1.74 16 19 N -0.88 -24.91 12.86 55.43 0.71 -24.20 16 20 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 C -0.20 -4.47 9.96 -26.73 -0.27 -4.73 16 25 C -0.14 -3.39 9.39 -26.73 -0.25 -3.64 16 26 C -0.06 -0.80 9.69 -39.61 -0.38 -1.19 16 27 C -0.21 -2.52 9.04 -39.43 -0.36 -2.87 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.58 7.66 -51.93 -0.40 0.18 16 34 H 0.08 0.56 7.66 -51.93 -0.40 0.16 16 35 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.11 1.22 8.09 -51.92 -0.42 0.80 16 38 H 0.11 1.33 8.08 -51.93 -0.42 0.91 16 39 H 0.07 1.93 8.13 -51.93 -0.42 1.51 16 40 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.09 2.19 8.14 -51.93 -0.42 1.76 16 46 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 47 H 0.13 1.21 6.30 -52.48 -0.33 0.88 16 LS Contribution 404.27 15.07 6.09 6.09 Total: -1.00 -33.07 404.27 -8.57 -41.64 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.43 Total: 1.95 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -1.56 Total: -14.22 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.71 Total: -24.20 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -1.37 Total: -27.26 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.07 -8.57 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759538152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.026 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.90 seconds