Wall clock time and date at job start Tue Mar 31 2020 20:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00091 * 2 1 4 4 C 1.52995 * 109.47026 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.47245 * 65.00193 * 4 3 2 6 6 C 1.35895 * 117.00340 * 179.97438 * 5 4 3 7 7 C 1.38736 * 120.06032 * 179.97438 * 6 5 4 8 8 C 1.38136 * 119.94611 * 180.02562 * 7 6 5 9 9 C 1.38265 * 120.05760 * 0.02624 * 8 7 6 10 10 C 1.50698 * 119.94599 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47576 * 89.99542 * 10 9 8 12 12 O 1.20821 * 119.99880 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00064 * 179.97438 * 11 10 9 14 14 C 1.45201 * 116.99622 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46827 * 180.02562 * 14 13 11 16 16 C 1.50703 * 115.55099 * 294.88178 * 15 14 13 17 17 H 1.07997 * 120.00062 * 99.47690 * 16 15 14 18 18 C 1.37880 * 120.00008 * 279.20999 * 16 15 14 19 19 N 1.31516 * 119.99699 * 355.32197 * 18 16 15 20 20 Si 1.86789 * 120.00071 * 175.33046 * 18 16 15 21 21 H 1.48502 * 109.47695 * 89.99692 * 20 18 16 22 22 H 1.48507 * 109.47282 * 209.99459 * 20 18 16 23 23 H 1.48504 * 109.47557 * 329.99450 * 20 18 16 24 24 C 1.53001 * 117.51891 * 80.58261 * 15 14 13 25 25 C 1.53000 * 60.00059 * 107.48346 * 24 15 14 26 26 C 1.38264 * 120.11231 * 0.24802 * 9 8 7 27 27 C 1.38145 * 120.05170 * 359.45377 * 26 9 8 28 28 H 1.08999 * 109.47686 * 299.99993 * 1 2 3 29 29 H 1.09006 * 109.47017 * 59.99774 * 1 2 3 30 30 H 1.09005 * 109.47469 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47108 * 59.99593 * 3 2 1 32 32 H 1.09001 * 109.47027 * 300.00244 * 3 2 1 33 33 H 1.09006 * 109.47460 * 304.99811 * 4 3 2 34 34 H 1.09001 * 109.47015 * 185.00297 * 4 3 2 35 35 H 1.07998 * 120.02581 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.97391 * 180.02562 * 8 7 6 37 37 H 1.09008 * 109.47185 * 329.99436 * 10 9 8 38 38 H 1.09004 * 109.47325 * 209.99771 * 10 9 8 39 39 H 1.08997 * 109.47463 * 60.00404 * 14 13 11 40 40 H 1.08998 * 109.47338 * 299.99974 * 14 13 11 41 41 H 0.96998 * 119.99922 * 180.02562 * 19 18 16 42 42 H 1.09005 * 117.49874 * 214.96807 * 24 15 14 43 43 H 1.08998 * 117.50103 * 359.97438 * 24 15 14 44 44 H 1.09002 * 117.49646 * 252.51586 * 25 24 15 45 45 H 1.08997 * 117.51925 * 107.47993 * 25 24 15 46 46 H 1.07999 * 119.97428 * 179.70734 * 26 9 8 47 47 H 1.08006 * 120.02466 * 180.24746 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3030 0.3982 -1.3812 7 6 5.7906 -0.1843 -2.5421 8 6 7.1502 -0.3676 -2.7031 9 6 8.0250 0.0283 -1.7083 10 6 9.5078 -0.1734 -1.8864 11 6 10.1046 1.0427 -2.5467 12 8 9.3984 1.9775 -2.8420 13 8 11.4208 1.0877 -2.8059 14 6 11.9264 2.2905 -3.4431 15 6 13.4355 2.1582 -3.6576 16 6 14.2664 2.0843 -2.4025 17 1 14.6112 1.1276 -2.0387 18 6 14.5910 3.2384 -1.7216 19 7 14.2548 4.4100 -2.2157 20 14 15.5085 3.1381 -0.0976 21 1 16.9711 3.1727 -0.3523 22 1 15.1278 4.2906 0.7581 23 1 15.1561 1.8714 0.5927 24 6 13.9095 1.3500 -4.8671 25 6 14.0429 2.8741 -4.8657 26 6 7.5413 0.6039 -0.5479 27 6 6.1829 0.7951 -0.3847 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5684 0.8427 34 1 3.9784 2.1765 0.0903 35 1 5.1076 -0.4941 -3.3192 36 1 7.5303 -0.8207 -3.6068 37 1 9.6828 -1.0491 -2.5115 38 1 9.9736 -0.3234 -0.9124 39 1 11.7237 3.1517 -2.8064 40 1 11.4335 2.4264 -4.4057 41 1 14.4835 5.2220 -1.7369 42 1 14.8223 0.7648 -4.7551 43 1 13.1461 0.9119 -5.5102 44 1 13.3672 3.4391 -5.5079 45 1 15.0432 3.2920 -4.7525 46 1 8.2263 0.9081 0.2297 47 1 5.8058 1.2484 0.5202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759538152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:33 Heat of formation + Delta-G solvation = -139.295213 kcal Electronic energy + Delta-G solvation = -27506.782994 eV Core-core repulsion = 23427.422126 eV Total energy + Delta-G solvation = -4079.360868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 9.71 seconds Orbital eigenvalues (eV) -41.55203 -40.96576 -39.21050 -38.60432 -38.10264 -36.84349 -34.02601 -33.49639 -32.11803 -31.36977 -29.18766 -27.89435 -27.27706 -26.98833 -24.70722 -23.38197 -22.96808 -22.57345 -21.34567 -21.17518 -19.33301 -18.59093 -18.29432 -17.83521 -17.55188 -17.17012 -17.00338 -16.61272 -16.52840 -16.18785 -16.15690 -15.76020 -15.51343 -15.26055 -14.89694 -14.46356 -14.25251 -14.00218 -13.88160 -13.56966 -13.50221 -13.16742 -12.94753 -12.85609 -12.82204 -12.66205 -12.56006 -12.38453 -12.28275 -12.07398 -11.84316 -11.72257 -11.64337 -11.60812 -11.26203 -10.89153 -10.69088 -10.45222 -10.07026 -9.95825 -9.10286 -8.12949 -6.24113 0.34032 0.39609 1.32606 1.41764 1.43437 1.53619 1.92307 2.18871 2.42750 2.77178 2.82759 3.15955 3.46766 3.66832 3.76258 3.91822 3.96098 4.03372 4.07890 4.15657 4.25085 4.32906 4.35300 4.39798 4.40048 4.49016 4.50360 4.53952 4.56950 4.64300 4.67180 4.70880 4.78051 4.85620 4.88708 4.97700 5.06870 5.19281 5.25981 5.34992 5.46026 5.59938 5.61326 5.73169 5.76121 5.81993 6.15987 6.36292 6.43441 6.80914 6.91124 7.44168 8.95668 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.001975 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.427927 B =14170.953756 C =14876.624851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.061 3.939 4 C 0.051 3.949 5 O -0.324 6.324 6 C 0.120 3.880 7 C -0.164 4.164 8 C -0.068 4.068 9 C -0.124 4.124 10 C -0.061 4.061 11 C 0.449 3.551 12 O -0.548 6.548 13 O -0.347 6.347 14 C 0.131 3.869 15 C 0.001 3.999 16 C -0.501 4.501 17 H 0.057 0.943 18 C 0.020 3.980 19 N -0.911 5.911 20 Si 0.952 3.048 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.266 1.266 24 C -0.176 4.176 25 C -0.148 4.148 26 C -0.074 4.074 27 C -0.212 4.212 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.036 0.964 40 H 0.047 0.953 41 H 0.260 0.740 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.134 0.866 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.725 -9.570 4.971 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.015 4.015 4 C -0.024 4.024 5 O -0.238 6.238 6 C 0.075 3.925 7 C -0.182 4.182 8 C -0.086 4.086 9 C -0.124 4.124 10 C -0.098 4.098 11 C 0.294 3.706 12 O -0.439 6.439 13 O -0.263 6.263 14 C 0.057 3.943 15 C 0.000 4.000 16 C -0.538 4.538 17 H 0.075 0.925 18 C -0.180 4.180 19 N -0.548 5.548 20 Si 0.778 3.222 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.213 4.213 25 C -0.186 4.186 26 C -0.093 4.093 27 C -0.231 4.231 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.152 0.848 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -23.943 -9.289 4.783 26.123 hybrid contribution 0.439 1.094 0.822 1.437 sum -23.504 -8.195 5.605 25.515 Atomic orbital electron populations 1.22926 0.79305 1.03795 1.01031 1.87918 1.21649 1.28411 1.95667 1.22716 0.90615 0.85341 1.02824 1.23131 0.94663 0.99001 0.85588 1.86089 1.19807 1.77248 1.40679 1.19190 0.82677 0.95757 0.94900 1.20583 0.95806 1.04440 0.97399 1.21058 0.91978 0.97310 0.98259 1.19367 0.93741 1.03362 0.95934 1.20361 0.91339 0.93859 1.04206 1.24557 0.80489 0.89755 0.75794 1.90614 1.62363 1.39771 1.51123 1.86530 1.24897 1.43108 1.71771 1.22408 0.94368 0.83436 0.94057 1.18919 0.89173 1.02005 0.89880 1.20634 1.32067 0.92797 1.08327 0.92470 1.25750 0.96489 0.95091 1.00691 1.70114 1.47569 0.97697 1.39462 0.85642 0.78886 0.77770 0.79923 1.19948 1.21204 1.18997 1.22982 1.02660 0.93341 1.02276 1.22474 1.01029 0.93783 1.01301 1.21070 0.95319 0.95531 0.97332 1.21386 0.93736 1.07229 1.00728 0.92437 0.93389 0.88927 0.88293 0.91938 0.90621 0.88830 0.84192 0.83655 0.84098 0.85071 0.94562 0.93525 0.93105 0.89554 0.89000 0.90651 0.91186 0.84800 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.39 10.67 -144.34 -1.54 -8.93 16 3 C 0.06 0.80 6.32 71.98 0.45 1.26 16 4 C 0.05 0.81 5.12 71.98 0.37 1.17 16 5 O -0.32 -7.57 10.10 -87.72 -0.89 -8.45 16 6 C 0.12 2.97 6.69 22.51 0.15 3.12 16 7 C -0.16 -3.99 9.99 22.36 0.22 -3.77 16 8 C -0.07 -1.65 9.69 22.25 0.22 -1.43 16 9 C -0.12 -3.19 4.38 -19.85 -0.09 -3.28 16 10 C -0.06 -1.53 5.94 29.10 0.17 -1.36 16 11 C 0.45 16.71 7.95 71.24 0.57 17.28 16 12 O -0.55 -23.84 15.78 21.98 0.35 -23.49 16 13 O -0.35 -14.95 10.16 -51.43 -0.52 -15.47 16 14 C 0.13 6.32 5.29 71.98 0.38 6.70 16 15 C 0.00 0.03 1.62 -52.93 -0.09 -0.05 16 16 C -0.50 -27.30 8.75 25.60 0.22 -27.07 16 17 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 18 C 0.02 1.08 5.44 84.66 0.46 1.55 16 19 N -0.91 -52.31 12.86 21.45 0.28 -52.04 16 20 Si 0.95 43.19 29.54 68.60 2.03 45.21 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 C -0.18 -7.38 9.96 30.59 0.30 -7.08 16 25 C -0.15 -6.91 9.39 30.59 0.29 -6.62 16 26 C -0.07 -1.86 9.69 22.25 0.22 -1.65 16 27 C -0.21 -4.91 9.04 22.37 0.20 -4.70 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.12 7.66 -2.38 -0.02 1.10 16 34 H 0.09 1.17 7.66 -2.39 -0.02 1.15 16 35 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 36 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.14 2.69 8.09 -2.38 -0.02 2.67 16 38 H 0.13 2.82 8.08 -2.38 -0.02 2.80 16 39 H 0.04 1.98 8.13 -2.39 -0.02 1.96 16 40 H 0.05 2.12 8.08 -2.39 -0.02 2.10 16 41 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 43 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 44 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 45 H 0.07 3.49 8.14 -2.39 -0.02 3.47 16 46 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 47 H 0.15 2.60 6.30 -2.91 -0.02 2.58 16 Total: -1.00 -71.65 404.27 5.95 -65.69 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.95 Total: 21.90 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: 5.30 Total: -24.42 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.28 Total: -52.04 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -2.60 Total: -56.35 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -71.65 5.95 -65.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759538152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.603 kcal (2) G-P(sol) polarization free energy of solvation -71.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.71 seconds