Wall clock time and date at job start Tue Mar 31 2020 19:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46894 * 109.47450 * 2 1 4 4 C 1.47450 * 110.99644 * 54.62948 * 3 2 1 5 5 C 1.54320 * 107.23042 * 123.25651 * 4 3 2 6 6 C 1.55138 * 103.02132 * 22.28893 * 5 4 3 7 7 C 1.47839 * 111.00306 * 175.47021 * 3 2 1 8 8 H 1.08993 * 110.37585 * 332.58650 * 7 3 2 9 9 C 1.53003 * 110.37139 * 94.80946 * 7 3 2 10 10 N 1.46498 * 109.47229 * 296.37843 * 9 7 3 11 11 C 1.34775 * 120.00034 * 184.01149 * 10 9 7 12 12 S 1.71199 * 120.00006 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00042 * 180.02562 * 11 10 9 14 14 C 1.39405 * 120.00131 * 175.53157 * 13 11 10 15 15 C 1.38669 * 119.64821 * 185.45594 * 14 13 11 16 16 C 1.40812 * 118.66838 * 180.02562 * 15 14 13 17 17 C 1.41542 * 120.99636 * 180.02562 * 16 15 14 18 18 H 1.08008 * 120.00028 * 333.60632 * 17 16 15 19 19 C 1.40032 * 120.00476 * 153.61384 * 17 16 15 20 20 N 1.30742 * 119.99836 * 352.77298 * 19 17 16 21 21 Si 1.86803 * 120.00144 * 173.05193 * 19 17 16 22 22 H 1.48499 * 109.46822 * 269.72168 * 21 19 17 23 23 H 1.48494 * 109.47290 * 29.72262 * 21 19 17 24 24 H 1.48498 * 109.47167 * 149.72432 * 21 19 17 25 25 C 1.41168 * 118.00726 * 0.27127 * 16 15 14 26 26 C 1.36585 * 119.13288 * 359.43436 * 25 16 15 27 27 N 1.32069 * 121.25854 * 0.58570 * 26 25 16 28 28 H 1.08999 * 109.46678 * 64.55615 * 1 2 3 29 29 H 1.08996 * 109.47235 * 184.55902 * 1 2 3 30 30 H 1.08995 * 109.46806 * 304.55822 * 1 2 3 31 31 H 1.09007 * 109.46982 * 240.00363 * 2 1 3 32 32 H 1.08998 * 109.47097 * 120.00800 * 2 1 3 33 33 H 1.08996 * 109.88926 * 242.66050 * 4 3 2 34 34 H 1.09001 * 109.88849 * 3.85369 * 4 3 2 35 35 H 1.09005 * 110.70313 * 140.66447 * 5 4 3 36 36 H 1.08998 * 110.70604 * 263.72556 * 5 4 3 37 37 H 1.09002 * 110.99441 * 206.25904 * 6 5 4 38 38 H 1.08999 * 110.99518 * 82.43203 * 6 5 4 39 39 H 1.09000 * 109.47310 * 176.37690 * 9 7 3 40 40 H 1.09001 * 109.46881 * 56.37648 * 9 7 3 41 41 H 0.97001 * 120.00131 * 4.01606 * 10 9 7 42 42 H 0.97002 * 120.00166 * 355.52554 * 13 11 10 43 43 H 1.07997 * 120.66579 * 359.97438 * 15 14 13 44 44 H 0.96998 * 120.00468 * 179.97438 * 20 19 17 45 45 H 1.08003 * 120.43199 * 179.72674 * 25 16 15 46 46 H 1.07999 * 119.37217 * 180.29453 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.4446 2.1487 1.1225 5 6 2.6235 2.7059 1.9478 6 6 3.7943 2.7046 0.9300 7 6 3.4936 1.4258 0.1090 8 1 3.8601 0.5423 0.6316 9 6 4.1279 1.5230 -1.2800 10 7 3.8115 0.3156 -2.0469 11 6 4.3346 0.1422 -3.2769 12 16 5.3692 1.3327 -3.9427 13 7 4.0432 -0.9683 -3.9827 14 6 4.5077 -1.1053 -5.2899 15 6 4.1105 -2.1963 -6.0482 16 6 4.5926 -2.3145 -7.3659 17 6 4.2185 -3.4076 -8.1836 18 1 3.9351 -4.3472 -7.7327 19 6 4.2159 -3.2710 -9.5772 20 7 4.4206 -2.0991 -10.1195 21 14 3.9122 -4.7616 -10.6614 22 1 5.2078 -5.4125 -10.9822 23 1 3.0383 -5.7249 -9.9450 24 1 3.2492 -4.3323 -11.9189 25 6 5.4644 -1.3130 -7.8452 26 6 5.7950 -0.2714 -7.0259 27 7 5.3241 -0.1919 -5.7945 28 1 -0.3633 0.4415 -0.9280 29 1 -0.3633 -1.0244 0.0817 30 1 -0.3633 0.5829 0.8463 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 0.8386 2.9700 0.7402 34 1 0.8347 1.4926 1.7435 35 1 2.4104 3.7192 2.2886 36 1 2.8438 2.0546 2.7936 37 1 4.7546 2.6246 1.4394 38 1 3.7625 3.5914 0.2970 39 1 5.2092 1.6170 -1.1798 40 1 3.7338 2.3968 -1.7989 41 1 3.2256 -0.3591 -1.6696 42 1 3.5102 -1.6723 -3.5811 43 1 3.4454 -2.9407 -5.6361 44 1 4.4192 -2.0044 -11.0849 45 1 5.8609 -1.3671 -8.8484 46 1 6.4579 0.4995 -7.3902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763168278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:35 Heat of formation + Delta-G solvation = 78.443357 kcal Electronic energy + Delta-G solvation = -25873.161305 eV Core-core repulsion = 22310.580664 eV Total energy + Delta-G solvation = -3562.580642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.06991 -39.10796 -37.45248 -34.98730 -33.91734 -33.64292 -30.68931 -30.59568 -28.99923 -28.38338 -26.11865 -25.54345 -23.91485 -22.78927 -21.66685 -21.40282 -20.87479 -20.33098 -18.24724 -17.96453 -17.01617 -16.40245 -15.89437 -15.39405 -15.06472 -14.87077 -14.76377 -14.46918 -14.25516 -14.02779 -13.78087 -13.54710 -13.41617 -12.99156 -12.90811 -12.46362 -12.32764 -12.01303 -11.69720 -11.58227 -11.55991 -11.48034 -11.30915 -11.23289 -11.13136 -11.04529 -10.89585 -10.34585 -10.28705 -9.93293 -9.55397 -9.32520 -8.71553 -8.43431 -7.99757 -7.37090 -6.91649 -6.72126 -5.23014 -4.59106 1.77164 2.57618 2.79014 3.01979 3.03922 3.06768 3.17071 3.34272 3.46225 3.85172 3.90335 4.19433 4.28340 4.53744 4.63112 4.74279 4.78753 4.81928 4.88536 5.06430 5.09869 5.26551 5.38799 5.42864 5.45588 5.58580 5.60793 5.71013 5.73265 5.80194 5.83339 5.87953 5.96257 6.25272 6.42451 6.55885 6.68203 6.78752 6.85580 6.98150 7.03501 7.20004 7.48528 7.54719 7.79155 7.94654 8.18507 8.51708 8.77629 8.79239 9.74363 10.14613 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021362 B = 0.002407 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.398807 B =11631.251230 C =12668.069220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.044 3.956 3 N -0.524 5.524 4 C 0.039 3.961 5 C -0.142 4.142 6 C -0.118 4.118 7 C 0.056 3.944 8 H 0.060 0.940 9 C 0.148 3.852 10 N -0.696 5.696 11 C 0.528 3.472 12 S -0.541 6.541 13 N -0.609 5.609 14 C 0.324 3.676 15 C -0.295 4.295 16 C 0.141 3.859 17 C -0.457 4.457 18 H 0.078 0.922 19 C 0.074 3.926 20 N -0.794 5.794 21 Si 0.916 3.084 22 H -0.267 1.267 23 H -0.263 1.263 24 H -0.277 1.277 25 C -0.209 4.209 26 C 0.092 3.908 27 N -0.482 5.482 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.384 0.616 42 H 0.396 0.604 43 H 0.097 0.903 44 H 0.282 0.718 45 H 0.133 0.867 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.351 3.672 21.075 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.084 4.084 3 N -0.249 5.249 4 C -0.088 4.088 5 C -0.181 4.181 6 C -0.156 4.156 7 C -0.053 4.053 8 H 0.078 0.922 9 C 0.023 3.977 10 N -0.332 5.332 11 C 0.173 3.827 12 S -0.411 6.411 13 N -0.232 5.232 14 C 0.094 3.906 15 C -0.322 4.322 16 C 0.132 3.868 17 C -0.488 4.488 18 H 0.096 0.904 19 C -0.144 4.144 20 N -0.420 5.420 21 Si 0.740 3.260 22 H -0.192 1.192 23 H -0.187 1.187 24 H -0.202 1.202 25 C -0.232 4.232 26 C -0.060 4.060 27 N -0.200 5.200 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.223 0.777 42 H 0.232 0.768 43 H 0.115 0.885 44 H 0.093 0.907 45 H 0.151 0.849 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.494 5.670 20.455 21.926 hybrid contribution -1.473 -3.220 0.313 3.555 sum -6.967 2.450 20.768 22.042 Atomic orbital electron populations 1.21912 0.94325 1.01970 1.03005 1.22351 0.96609 0.89396 1.00049 1.63628 1.05509 1.12278 1.43481 1.22889 0.96932 0.98016 0.90977 1.22788 0.95368 1.01966 0.97947 1.22645 0.98579 0.97427 0.96996 1.22948 0.87889 0.98785 0.95667 0.92189 1.21548 1.00600 0.86920 0.88635 1.45320 1.49289 1.23738 1.14819 1.22396 0.87392 0.89162 0.83713 1.92860 1.39482 1.34516 1.74237 1.42238 1.50622 1.17168 1.13205 1.18093 0.96643 0.93739 0.82168 1.21204 1.11504 1.01080 0.98398 1.17571 0.87471 0.92157 0.89575 1.19525 1.40330 0.98423 0.90554 0.90372 1.25942 0.92543 0.96963 0.98935 1.69733 1.35642 1.23449 1.13149 0.86186 0.79416 0.81322 0.79031 1.19240 1.18688 1.20168 1.22290 1.01465 0.97444 1.01971 1.22083 0.97550 0.96514 0.89892 1.69934 1.12856 1.23973 1.13204 0.91535 0.92055 0.92151 0.91357 0.94627 0.90238 0.92248 0.90417 0.91563 0.90232 0.89627 0.89381 0.89422 0.77690 0.76765 0.88506 0.90699 0.84914 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.77 37.16 0.36 -0.72 16 2 C 0.04 0.34 5.29 -3.82 -0.02 0.32 16 3 N -0.52 -4.46 4.88 -223.38 -1.09 -5.55 16 4 C 0.04 0.27 6.08 -2.83 -0.02 0.25 16 5 C -0.14 -0.83 6.94 -24.91 -0.17 -1.01 16 6 C -0.12 -0.81 6.50 -24.59 -0.16 -0.97 16 7 C 0.06 0.47 2.69 -66.19 -0.18 0.29 16 8 H 0.06 0.48 7.70 -51.93 -0.40 0.08 16 9 C 0.15 1.71 4.85 -4.04 -0.02 1.69 16 10 N -0.70 -9.05 5.48 -62.03 -0.34 -9.39 16 11 C 0.53 9.52 7.95 -86.92 -0.69 8.83 16 12 S -0.54 -12.12 25.30 -107.50 -2.72 -14.84 16 13 N -0.61 -11.18 5.39 -13.03 -0.07 -11.25 16 14 C 0.32 7.50 7.40 -154.71 -1.15 6.36 16 15 C -0.29 -7.04 9.74 -38.45 -0.37 -7.41 16 16 C 0.14 3.70 5.61 -106.55 -0.60 3.10 16 17 C -0.46 -11.77 9.14 -37.65 -0.34 -12.11 16 18 H 0.08 1.92 7.86 -52.48 -0.41 1.50 16 19 C 0.07 1.82 5.35 -17.34 -0.09 1.73 16 20 N -0.79 -20.13 10.60 55.55 0.59 -19.54 16 21 Si 0.92 18.24 29.57 -169.99 -5.03 13.21 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 25 C -0.21 -5.45 8.73 -39.07 -0.34 -5.79 16 26 C 0.09 2.31 11.10 -18.05 -0.20 2.11 16 27 N -0.48 -12.13 6.08 -12.76 -0.08 -12.21 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 6.05 -51.93 -0.31 0.07 16 31 H 0.07 0.55 5.30 -51.93 -0.28 0.28 16 32 H 0.04 0.25 7.98 -51.93 -0.41 -0.17 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.37 5.99 -51.93 -0.31 0.05 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.63 8.06 -51.93 -0.42 0.21 16 39 H 0.09 1.09 7.83 -51.93 -0.41 0.68 16 40 H 0.09 1.18 8.11 -51.93 -0.42 0.76 16 41 H 0.38 4.04 5.28 -40.82 -0.22 3.82 16 42 H 0.40 5.67 8.71 -40.82 -0.36 5.32 16 43 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 44 H 0.28 6.50 8.29 -40.82 -0.34 6.17 16 45 H 0.13 3.53 6.03 -52.48 -0.32 3.21 16 46 H 0.12 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -31.73 373.92 -13.87 -45.60 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -6.78 Total: 11.66 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -3.99 Total: -3.33 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.99 Total: -57.94 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 16 Polarization: -12.12 SS G_CDS: -2.72 Total: -14.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.73 -13.87 -45.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763168278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.047 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds