Wall clock time and date at job start Tue Mar 31 2020 19:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46894 * 109.47450 * 2 1 4 4 C 1.47450 * 110.99644 * 54.62948 * 3 2 1 5 5 C 1.54320 * 107.23042 * 123.25651 * 4 3 2 6 6 C 1.55138 * 103.02132 * 22.28893 * 5 4 3 7 7 C 1.47839 * 111.00306 * 175.47021 * 3 2 1 8 8 H 1.08993 * 110.37585 * 332.58650 * 7 3 2 9 9 C 1.53003 * 110.37139 * 94.80946 * 7 3 2 10 10 N 1.46498 * 109.47229 * 296.37843 * 9 7 3 11 11 C 1.34775 * 120.00034 * 184.01149 * 10 9 7 12 12 S 1.71199 * 120.00006 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00042 * 180.02562 * 11 10 9 14 14 C 1.39405 * 120.00131 * 175.53157 * 13 11 10 15 15 C 1.38669 * 119.64821 * 185.45594 * 14 13 11 16 16 C 1.40812 * 118.66838 * 180.02562 * 15 14 13 17 17 C 1.41542 * 120.99636 * 180.02562 * 16 15 14 18 18 H 1.08008 * 120.00028 * 333.60632 * 17 16 15 19 19 C 1.40032 * 120.00476 * 153.61384 * 17 16 15 20 20 N 1.30742 * 119.99836 * 352.77298 * 19 17 16 21 21 Si 1.86803 * 120.00144 * 173.05193 * 19 17 16 22 22 H 1.48499 * 109.46822 * 269.72168 * 21 19 17 23 23 H 1.48494 * 109.47290 * 29.72262 * 21 19 17 24 24 H 1.48498 * 109.47167 * 149.72432 * 21 19 17 25 25 C 1.41168 * 118.00726 * 0.27127 * 16 15 14 26 26 C 1.36585 * 119.13288 * 359.43436 * 25 16 15 27 27 N 1.32069 * 121.25854 * 0.58570 * 26 25 16 28 28 H 1.08999 * 109.46678 * 64.55615 * 1 2 3 29 29 H 1.08996 * 109.47235 * 184.55902 * 1 2 3 30 30 H 1.08995 * 109.46806 * 304.55822 * 1 2 3 31 31 H 1.09007 * 109.46982 * 240.00363 * 2 1 3 32 32 H 1.08998 * 109.47097 * 120.00800 * 2 1 3 33 33 H 1.08996 * 109.88926 * 242.66050 * 4 3 2 34 34 H 1.09001 * 109.88849 * 3.85369 * 4 3 2 35 35 H 1.09005 * 110.70313 * 140.66447 * 5 4 3 36 36 H 1.08998 * 110.70604 * 263.72556 * 5 4 3 37 37 H 1.09002 * 110.99441 * 206.25904 * 6 5 4 38 38 H 1.08999 * 110.99518 * 82.43203 * 6 5 4 39 39 H 1.09000 * 109.47310 * 176.37690 * 9 7 3 40 40 H 1.09001 * 109.46881 * 56.37648 * 9 7 3 41 41 H 0.97001 * 120.00131 * 4.01606 * 10 9 7 42 42 H 0.97002 * 120.00166 * 355.52554 * 13 11 10 43 43 H 1.07997 * 120.66579 * 359.97438 * 15 14 13 44 44 H 0.96998 * 120.00468 * 179.97438 * 20 19 17 45 45 H 1.08003 * 120.43199 * 179.72674 * 25 16 15 46 46 H 1.07999 * 119.37217 * 180.29453 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.4446 2.1487 1.1225 5 6 2.6235 2.7059 1.9478 6 6 3.7943 2.7046 0.9300 7 6 3.4936 1.4258 0.1090 8 1 3.8601 0.5423 0.6316 9 6 4.1279 1.5230 -1.2800 10 7 3.8115 0.3156 -2.0469 11 6 4.3346 0.1422 -3.2769 12 16 5.3692 1.3327 -3.9427 13 7 4.0432 -0.9683 -3.9827 14 6 4.5077 -1.1053 -5.2899 15 6 4.1105 -2.1963 -6.0482 16 6 4.5926 -2.3145 -7.3659 17 6 4.2185 -3.4076 -8.1836 18 1 3.9351 -4.3472 -7.7327 19 6 4.2159 -3.2710 -9.5772 20 7 4.4206 -2.0991 -10.1195 21 14 3.9122 -4.7616 -10.6614 22 1 5.2078 -5.4125 -10.9822 23 1 3.0383 -5.7249 -9.9450 24 1 3.2492 -4.3323 -11.9189 25 6 5.4644 -1.3130 -7.8452 26 6 5.7950 -0.2714 -7.0259 27 7 5.3241 -0.1919 -5.7945 28 1 -0.3633 0.4415 -0.9280 29 1 -0.3633 -1.0244 0.0817 30 1 -0.3633 0.5829 0.8463 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 0.8386 2.9700 0.7402 34 1 0.8347 1.4926 1.7435 35 1 2.4104 3.7192 2.2886 36 1 2.8438 2.0546 2.7936 37 1 4.7546 2.6246 1.4394 38 1 3.7625 3.5914 0.2970 39 1 5.2092 1.6170 -1.1798 40 1 3.7338 2.3968 -1.7989 41 1 3.2256 -0.3591 -1.6696 42 1 3.5102 -1.6723 -3.5811 43 1 3.4454 -2.9407 -5.6361 44 1 4.4192 -2.0044 -11.0849 45 1 5.8609 -1.3671 -8.8484 46 1 6.4579 0.4995 -7.3902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763168278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:34 Heat of formation + Delta-G solvation = 60.183357 kcal Electronic energy + Delta-G solvation = -25873.953118 eV Core-core repulsion = 22310.580664 eV Total energy + Delta-G solvation = -3563.372455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.11981 -40.52758 -38.95823 -36.50453 -35.44828 -34.44920 -32.56450 -31.67261 -30.04326 -29.52418 -27.98743 -26.52322 -25.21366 -23.87132 -23.25737 -22.96150 -21.68409 -21.10470 -20.00171 -19.31455 -18.12974 -17.69054 -17.11668 -16.78794 -16.45037 -16.13934 -16.06091 -15.87684 -15.61657 -15.36330 -14.91913 -14.73165 -14.35199 -14.17539 -14.07498 -13.87932 -13.37441 -13.10169 -12.88639 -12.84531 -12.71743 -12.56103 -12.28133 -12.15482 -12.11683 -12.00753 -11.94819 -11.81385 -11.72452 -11.56753 -11.28192 -10.84991 -10.30434 -9.92225 -9.32886 -9.07681 -8.72205 -8.55638 -7.03036 -6.54522 0.16378 0.98055 1.08650 1.23719 1.41565 1.54948 1.61083 1.63063 2.21252 2.55865 2.83309 2.86457 3.58138 3.66897 3.78942 3.88897 4.05131 4.10094 4.18245 4.21898 4.25884 4.48210 4.54335 4.59287 4.61929 4.67547 4.74010 4.82493 4.88805 4.94594 4.99993 5.01783 5.03348 5.08282 5.15374 5.26338 5.28199 5.35686 5.38561 5.50820 5.56422 5.90304 5.96142 6.03120 6.08396 6.25296 6.37634 6.59560 6.83848 6.87610 7.84931 8.32623 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021362 B = 0.002407 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.398807 B =11631.251230 C =12668.069220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.042 3.958 3 N -0.543 5.543 4 C 0.039 3.961 5 C -0.135 4.135 6 C -0.118 4.118 7 C 0.064 3.936 8 H 0.073 0.927 9 C 0.148 3.852 10 N -0.662 5.662 11 C 0.552 3.448 12 S -0.634 6.634 13 N -0.599 5.599 14 C 0.325 3.675 15 C -0.299 4.299 16 C 0.113 3.887 17 C -0.483 4.483 18 H 0.086 0.914 19 C 0.032 3.968 20 N -0.824 5.824 21 Si 0.992 3.008 22 H -0.262 1.262 23 H -0.255 1.255 24 H -0.270 1.270 25 C -0.228 4.228 26 C 0.086 3.914 27 N -0.498 5.498 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.403 0.597 42 H 0.419 0.581 43 H 0.120 0.880 44 H 0.290 0.710 45 H 0.120 0.880 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.905 2.076 23.202 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 N -0.268 5.268 4 C -0.089 4.089 5 C -0.173 4.173 6 C -0.156 4.156 7 C -0.045 4.045 8 H 0.091 0.909 9 C 0.024 3.976 10 N -0.296 5.296 11 C 0.192 3.808 12 S -0.505 6.505 13 N -0.225 5.225 14 C 0.094 3.906 15 C -0.326 4.326 16 C 0.104 3.896 17 C -0.514 4.514 18 H 0.104 0.896 19 C -0.184 4.184 20 N -0.450 5.450 21 Si 0.812 3.188 22 H -0.186 1.186 23 H -0.179 1.179 24 H -0.195 1.195 25 C -0.251 4.251 26 C -0.066 4.066 27 N -0.216 5.216 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.246 0.754 42 H 0.260 0.740 43 H 0.138 0.862 44 H 0.100 0.900 45 H 0.138 0.862 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.093 4.075 22.676 24.107 hybrid contribution -1.083 -2.681 -0.192 2.898 sum -8.177 1.394 22.485 23.966 Atomic orbital electron populations 1.21887 0.93900 1.02641 1.02473 1.22389 0.96992 0.88968 1.00254 1.63551 1.05397 1.13062 1.44818 1.22907 0.97365 0.97884 0.90704 1.22766 0.94089 1.02788 0.97655 1.22664 0.99820 0.96120 0.97012 1.22855 0.88006 1.00242 0.93382 0.90899 1.21703 1.00647 0.85270 0.90024 1.45306 1.47182 1.24333 1.12741 1.21949 0.86376 0.87832 0.84614 1.93103 1.43575 1.37331 1.76481 1.41930 1.50759 1.17984 1.11828 1.18263 0.95710 0.92999 0.83660 1.21380 1.11646 1.01760 0.97779 1.17966 0.87943 0.92670 0.90982 1.19842 1.41284 0.98648 0.91636 0.89639 1.26882 0.91643 0.99943 0.99893 1.69809 1.35700 1.25540 1.13977 0.85047 0.79490 0.77284 0.76946 1.18634 1.17876 1.19474 1.22227 1.02698 0.98486 1.01729 1.22258 0.97683 0.96512 0.90178 1.70058 1.13690 1.24821 1.13029 0.93172 0.91021 0.91357 0.92052 0.93251 0.90871 0.91123 0.89466 0.90469 0.88998 0.90555 0.89902 0.91195 0.75401 0.74048 0.86161 0.89954 0.86190 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.77 71.98 0.70 -1.07 16 2 C 0.04 0.53 5.29 86.31 0.46 0.98 16 3 N -0.54 -8.02 4.88 -860.64 -4.20 -12.23 16 4 C 0.04 0.44 6.08 86.65 0.53 0.96 16 5 C -0.13 -1.20 6.94 31.77 0.22 -0.98 16 6 C -0.12 -1.37 6.50 31.98 0.21 -1.16 16 7 C 0.06 0.93 2.69 45.39 0.12 1.06 16 8 H 0.07 0.93 7.70 -2.39 -0.02 0.91 16 9 C 0.15 3.26 4.85 86.38 0.42 3.68 16 10 N -0.66 -16.09 5.48 -350.17 -1.92 -18.00 16 11 C 0.55 19.45 7.95 179.06 1.42 20.87 16 12 S -0.63 -29.08 25.30 -56.49 -1.43 -30.51 16 13 N -0.60 -21.19 5.39 -195.13 -1.05 -22.25 16 14 C 0.33 15.02 7.40 132.78 0.98 16.00 16 15 C -0.30 -14.19 9.74 23.00 0.22 -13.97 16 16 C 0.11 6.02 5.61 -21.12 -0.12 5.91 16 17 C -0.48 -24.98 9.14 23.52 0.21 -24.77 16 18 H 0.09 4.15 7.86 -2.91 -0.02 4.13 16 19 C 0.03 1.56 5.35 85.29 0.46 2.01 16 20 N -0.82 -42.41 10.60 21.84 0.23 -42.18 16 21 Si 0.99 36.78 29.57 68.60 2.03 38.81 16 22 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 23 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 24 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 25 C -0.23 -12.34 8.73 22.60 0.20 -12.14 16 26 C 0.09 4.49 11.10 84.27 0.94 5.43 16 27 N -0.50 -25.59 6.08 -194.29 -1.18 -26.77 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.69 6.05 -2.39 -0.01 0.67 16 31 H 0.06 0.81 5.30 -2.38 -0.01 0.80 16 32 H 0.05 0.51 7.98 -2.39 -0.02 0.49 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.65 5.99 -2.39 -0.01 0.64 16 35 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 1.05 8.06 -2.39 -0.02 1.03 16 39 H 0.08 2.01 7.83 -2.39 -0.02 1.99 16 40 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 41 H 0.40 7.37 5.28 -92.71 -0.49 6.88 16 42 H 0.42 10.93 8.71 -92.71 -0.81 10.12 16 43 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 44 H 0.29 13.48 8.29 -92.71 -0.77 12.71 16 45 H 0.12 6.69 6.03 -2.91 -0.02 6.67 16 46 H 0.13 6.41 8.06 -2.91 -0.02 6.39 16 Total: -1.00 -70.94 373.92 -0.84 -71.78 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: -0.29 Total: 38.54 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 6.97 Total: 2.81 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -8.12 Total: -121.43 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Atomic # 16 Polarization: -29.08 SS G_CDS: -1.43 Total: -30.51 kcal Total: -70.94 -0.84 -71.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763168278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.964 kcal (2) G-P(sol) polarization free energy of solvation -70.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds