Wall clock time and date at job start Tue Mar 31 2020 20:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46890 * 109.47255 * 2 1 4 4 C 1.47851 * 110.99907 * 55.46555 * 3 2 1 5 5 C 1.54911 * 104.79802 * 146.36612 * 4 3 2 6 6 C 1.55146 * 101.64944 * 322.92661 * 5 4 3 7 7 C 1.47443 * 110.99954 * 176.30315 * 3 2 1 8 8 H 1.09008 * 109.88756 * 117.17684 * 7 3 2 9 9 C 1.52999 * 109.89091 * 356.15013 * 7 3 2 10 10 N 1.46502 * 109.47363 * 176.90065 * 9 7 3 11 11 C 1.34771 * 120.00046 * 184.90981 * 10 9 7 12 12 S 1.71199 * 120.00008 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00198 * 179.97438 * 11 10 9 14 14 C 1.39401 * 120.00105 * 184.98813 * 13 11 10 15 15 C 1.38664 * 119.65056 * 174.52176 * 14 13 11 16 16 C 1.40812 * 118.67427 * 179.97438 * 15 14 13 17 17 C 1.41545 * 120.99887 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00410 * 149.34804 * 17 16 15 19 19 C 1.40038 * 119.99837 * 329.35165 * 17 16 15 20 20 N 1.30746 * 119.99863 * 167.93059 * 19 17 16 21 21 Si 1.86802 * 119.99797 * 347.93389 * 19 17 16 22 22 H 1.48491 * 109.47118 * 92.40286 * 21 19 17 23 23 H 1.48503 * 109.46854 * 212.39934 * 21 19 17 24 24 H 1.48496 * 109.47157 * 332.39634 * 21 19 17 25 25 C 1.41165 * 118.00866 * 359.97438 * 16 15 14 26 26 C 1.36591 * 119.13123 * 0.02562 * 25 16 15 27 27 N 1.32078 * 121.25798 * 359.74443 * 26 25 16 28 28 H 1.08999 * 109.47180 * 300.00191 * 1 2 3 29 29 H 1.09010 * 109.46678 * 60.00388 * 1 2 3 30 30 H 1.08999 * 109.47667 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47429 * 239.99372 * 2 1 3 32 32 H 1.09002 * 109.46472 * 120.00253 * 2 1 3 33 33 H 1.09003 * 110.36945 * 265.19121 * 4 3 2 34 34 H 1.08998 * 110.37707 * 27.41869 * 4 3 2 35 35 H 1.08997 * 110.99020 * 81.01145 * 5 4 3 36 36 H 1.08991 * 110.98961 * 204.83778 * 5 4 3 37 37 H 1.09003 * 110.70357 * 277.27476 * 6 5 4 38 38 H 1.09001 * 110.70789 * 154.03763 * 6 5 4 39 39 H 1.09000 * 109.46999 * 56.89639 * 9 7 3 40 40 H 1.08998 * 109.47072 * 296.89984 * 9 7 3 41 41 H 0.96999 * 119.99806 * 4.90612 * 10 9 7 42 42 H 0.96998 * 120.00021 * 5.26186 * 13 11 10 43 43 H 1.08007 * 120.66289 * 359.95511 * 15 14 13 44 44 H 0.96995 * 119.99523 * 179.97438 * 20 19 17 45 45 H 1.07993 * 120.43831 * 179.97438 * 25 16 15 46 46 H 1.07990 * 119.37423 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4585 2.1453 1.1371 5 6 2.5796 3.1341 1.5435 6 6 3.8512 2.2719 1.3275 7 6 3.4909 1.4251 0.0888 8 1 3.9042 1.8836 -0.8097 9 6 4.0416 0.0068 0.2497 10 7 5.5060 0.0501 0.2626 11 6 6.2137 -1.0964 0.2953 12 16 5.4016 -2.6032 0.3224 13 7 7.5608 -1.0566 0.3067 14 6 8.2937 -2.2403 0.2355 15 6 9.6755 -2.1864 0.1327 16 6 10.3954 -3.3946 0.0627 17 6 11.8069 -3.3970 -0.0436 18 1 12.3790 -4.2087 0.3809 19 6 12.4614 -2.3469 -0.6992 20 7 13.7588 -2.2202 -0.5973 21 14 11.4810 -1.1270 -1.7191 22 1 11.1032 0.0339 -0.8739 23 1 12.3074 -0.6598 -2.8611 24 1 10.2534 -1.7856 -2.2332 25 6 9.6673 -4.6033 0.1017 26 6 8.3061 -4.5566 0.2043 27 7 7.6630 -3.4050 0.2723 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 0.5668 2.6896 0.8263 34 1 1.2239 1.4743 1.9635 35 1 2.5849 4.0077 0.8917 36 1 2.4805 3.4287 2.5882 37 1 4.0347 1.6327 2.1912 38 1 4.7155 2.9042 1.1240 39 1 3.7037 -0.6108 -0.5825 40 1 3.6825 -0.4183 1.1869 41 1 5.9661 0.9039 0.2475 42 1 8.0204 -0.2046 0.3684 43 1 10.1893 -1.2368 0.1066 44 1 14.2121 -1.4931 -1.0517 45 1 10.1797 -5.5526 0.0503 46 1 7.7452 -5.4789 0.2349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763168280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:03 Heat of formation + Delta-G solvation = 79.565912 kcal Electronic energy + Delta-G solvation = -26101.738687 eV Core-core repulsion = 22539.206722 eV Total energy + Delta-G solvation = -3562.531964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 20.75 seconds Orbital eigenvalues (eV) -40.31318 -39.43872 -37.71814 -35.09564 -33.87938 -33.67863 -31.33791 -30.89257 -29.11450 -28.63607 -26.22691 -25.35980 -23.89783 -23.30321 -22.32744 -21.43543 -21.17281 -19.80670 -18.28870 -18.14101 -17.02118 -16.51435 -15.97890 -15.72204 -15.40696 -15.03509 -14.94432 -14.83902 -14.42582 -14.27219 -13.99785 -13.61648 -13.31667 -13.09882 -12.98927 -12.88283 -12.65514 -12.09335 -11.80880 -11.63381 -11.57358 -11.55291 -11.36510 -11.13121 -11.05250 -11.02458 -10.82186 -10.74493 -10.54295 -10.00888 -9.73003 -9.46699 -8.70523 -8.62645 -8.25018 -7.69036 -7.14826 -7.07075 -5.49472 -4.75371 1.48715 2.33084 2.59386 2.64891 2.89607 2.95257 3.10929 3.19636 3.51686 3.78689 3.83176 4.10525 4.26512 4.33239 4.55471 4.73164 4.85106 4.88359 5.00777 5.02803 5.18508 5.27418 5.37261 5.38097 5.40727 5.47851 5.53816 5.58291 5.59376 5.70239 5.80499 5.81888 5.92755 5.99514 6.07867 6.37785 6.47518 6.54570 6.63734 6.69403 6.71079 6.96957 7.12238 7.26959 7.50294 7.61085 7.97029 8.19899 8.40933 8.62550 9.40582 9.95030 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019520 B = 0.002774 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.088803 B =10093.028949 C =11093.487299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.032 3.968 3 N -0.516 5.516 4 C 0.040 3.960 5 C -0.129 4.129 6 C -0.144 4.144 7 C 0.060 3.940 8 H 0.092 0.908 9 C 0.115 3.885 10 N -0.696 5.696 11 C 0.529 3.471 12 S -0.531 6.531 13 N -0.612 5.612 14 C 0.345 3.655 15 C -0.311 4.311 16 C 0.125 3.875 17 C -0.439 4.439 18 H 0.096 0.904 19 C 0.084 3.916 20 N -0.806 5.806 21 Si 0.917 3.083 22 H -0.275 1.275 23 H -0.291 1.291 24 H -0.244 1.244 25 C -0.256 4.256 26 C 0.117 3.883 27 N -0.485 5.485 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.389 0.611 42 H 0.400 0.600 43 H 0.105 0.895 44 H 0.287 0.713 45 H 0.109 0.891 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.145 12.764 1.896 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.095 4.095 3 N -0.240 5.240 4 C -0.088 4.088 5 C -0.167 4.167 6 C -0.182 4.182 7 C -0.049 4.049 8 H 0.110 0.890 9 C -0.010 4.010 10 N -0.329 5.329 11 C 0.175 3.825 12 S -0.401 6.401 13 N -0.235 5.235 14 C 0.115 3.885 15 C -0.338 4.338 16 C 0.117 3.883 17 C -0.469 4.469 18 H 0.114 0.886 19 C -0.135 4.135 20 N -0.430 5.430 21 Si 0.744 3.256 22 H -0.201 1.201 23 H -0.218 1.218 24 H -0.168 1.168 25 C -0.279 4.279 26 C -0.036 4.036 27 N -0.204 5.204 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.225 0.775 42 H 0.236 0.764 43 H 0.122 0.878 44 H 0.097 0.903 45 H 0.127 0.873 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.681 11.953 1.462 23.931 hybrid contribution 2.097 1.955 0.247 2.878 sum -18.584 13.908 1.708 23.275 Atomic orbital electron populations 1.21837 0.94803 1.02028 1.02169 1.22436 0.96031 0.88949 1.02127 1.63901 1.04252 1.13508 1.42378 1.23102 0.98130 0.95583 0.91943 1.22692 0.94074 0.98221 1.01705 1.22956 0.98768 0.98598 0.97894 1.22701 0.88987 0.94248 0.99003 0.88987 1.22266 0.77040 0.97197 1.04516 1.44997 1.07697 1.05743 1.74481 1.22415 0.84458 0.93340 0.82332 1.92881 1.64924 1.15011 1.67281 1.42283 1.03166 1.09468 1.68589 1.18091 0.86719 0.85488 0.98160 1.21232 0.91606 0.98989 1.21971 1.17675 0.93539 0.90081 0.87043 1.19490 0.89690 1.06736 1.31020 0.88590 1.26158 0.95070 0.96925 0.95375 1.69609 1.09819 1.29146 1.34438 0.86244 0.80694 0.79752 0.78876 1.20148 1.21848 1.16781 1.21839 0.94938 0.98070 1.13044 1.22087 0.91342 0.95710 0.94440 1.70088 1.34043 0.95633 1.20626 0.92829 0.91970 0.91923 0.89742 0.93472 0.90003 0.93234 0.90545 0.90704 0.90867 0.90635 0.88689 0.90148 0.77503 0.76364 0.87764 0.90258 0.87267 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.72 37.16 0.36 -0.74 16 2 C 0.03 0.28 4.45 -3.83 -0.02 0.26 16 3 N -0.52 -4.34 5.27 -223.34 -1.18 -5.52 16 4 C 0.04 0.28 5.34 -2.29 -0.01 0.27 16 5 C -0.13 -0.80 7.08 -24.59 -0.17 -0.98 16 6 C -0.14 -1.00 5.99 -24.90 -0.15 -1.14 16 7 C 0.06 0.49 3.53 -66.72 -0.24 0.25 16 8 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 9 C 0.11 1.21 3.19 -4.04 -0.01 1.20 16 10 N -0.70 -8.08 5.40 -62.03 -0.33 -8.41 16 11 C 0.53 8.83 7.95 -86.93 -0.69 8.14 16 12 S -0.53 -10.96 25.29 -107.50 -2.72 -13.68 16 13 N -0.61 -10.72 5.39 -13.03 -0.07 -10.79 16 14 C 0.35 7.58 7.40 -154.72 -1.15 6.43 16 15 C -0.31 -7.18 6.95 -38.45 -0.27 -7.45 16 16 C 0.13 3.08 5.16 -106.55 -0.55 2.53 16 17 C -0.44 -11.41 9.67 -37.65 -0.36 -11.78 16 18 H 0.10 2.61 8.06 -52.49 -0.42 2.18 16 19 C 0.08 2.13 5.48 -17.34 -0.10 2.03 16 20 N -0.81 -20.67 13.92 55.55 0.77 -19.89 16 21 Si 0.92 19.95 24.42 -169.99 -4.15 15.80 16 22 H -0.27 -5.59 6.67 56.52 0.38 -5.21 16 23 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.24 -5.60 6.64 56.52 0.38 -5.22 16 25 C -0.26 -5.84 9.85 -39.07 -0.38 -6.22 16 26 C 0.12 2.59 11.10 -18.04 -0.20 2.39 16 27 N -0.49 -11.22 6.08 -12.76 -0.08 -11.30 16 28 H 0.05 0.36 6.81 -51.93 -0.35 0.00 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.80 6.88 -51.93 -0.36 0.44 16 32 H 0.05 0.44 6.36 -51.93 -0.33 0.11 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.35 7.39 -51.93 -0.38 -0.03 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.57 7.80 -51.93 -0.40 0.17 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.10 1.16 6.14 -51.93 -0.32 0.84 16 40 H 0.08 0.94 6.77 -51.93 -0.35 0.59 16 41 H 0.39 3.38 8.21 -40.82 -0.34 3.04 16 42 H 0.40 5.59 8.72 -40.82 -0.36 5.23 16 43 H 0.10 2.31 4.43 -52.48 -0.23 2.08 16 44 H 0.29 6.65 8.29 -40.82 -0.34 6.31 16 45 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 46 H 0.13 2.56 8.06 -52.49 -0.42 2.13 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -30.72 368.05 -12.98 -43.70 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.84 Total: 9.35 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -3.94 Total: -4.80 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.89 Total: -55.92 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.15 Total: 15.80 kcal Atomic # 16 Polarization: -10.96 SS G_CDS: -2.72 Total: -13.68 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.72 -12.98 -43.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763168280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.267 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.75 seconds