Wall clock time and date at job start Tue Mar 31 2020 19:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46890 * 109.47255 * 2 1 4 4 C 1.47851 * 110.99907 * 55.46555 * 3 2 1 5 5 C 1.54911 * 104.79802 * 146.36612 * 4 3 2 6 6 C 1.55146 * 101.64944 * 322.92661 * 5 4 3 7 7 C 1.47443 * 110.99954 * 176.30315 * 3 2 1 8 8 H 1.09008 * 109.88756 * 117.17684 * 7 3 2 9 9 C 1.52999 * 109.89091 * 356.15013 * 7 3 2 10 10 N 1.46502 * 109.47363 * 176.90065 * 9 7 3 11 11 C 1.34771 * 120.00046 * 184.90981 * 10 9 7 12 12 S 1.71199 * 120.00008 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00198 * 179.97438 * 11 10 9 14 14 C 1.39401 * 120.00105 * 184.98813 * 13 11 10 15 15 C 1.38664 * 119.65056 * 174.52176 * 14 13 11 16 16 C 1.40812 * 118.67427 * 179.97438 * 15 14 13 17 17 C 1.41545 * 120.99887 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00410 * 149.34804 * 17 16 15 19 19 C 1.40038 * 119.99837 * 329.35165 * 17 16 15 20 20 N 1.30746 * 119.99863 * 167.93059 * 19 17 16 21 21 Si 1.86802 * 119.99797 * 347.93389 * 19 17 16 22 22 H 1.48491 * 109.47118 * 92.40286 * 21 19 17 23 23 H 1.48503 * 109.46854 * 212.39934 * 21 19 17 24 24 H 1.48496 * 109.47157 * 332.39634 * 21 19 17 25 25 C 1.41165 * 118.00866 * 359.97438 * 16 15 14 26 26 C 1.36591 * 119.13123 * 0.02562 * 25 16 15 27 27 N 1.32078 * 121.25798 * 359.74443 * 26 25 16 28 28 H 1.08999 * 109.47180 * 300.00191 * 1 2 3 29 29 H 1.09010 * 109.46678 * 60.00388 * 1 2 3 30 30 H 1.08999 * 109.47667 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47429 * 239.99372 * 2 1 3 32 32 H 1.09002 * 109.46472 * 120.00253 * 2 1 3 33 33 H 1.09003 * 110.36945 * 265.19121 * 4 3 2 34 34 H 1.08998 * 110.37707 * 27.41869 * 4 3 2 35 35 H 1.08997 * 110.99020 * 81.01145 * 5 4 3 36 36 H 1.08991 * 110.98961 * 204.83778 * 5 4 3 37 37 H 1.09003 * 110.70357 * 277.27476 * 6 5 4 38 38 H 1.09001 * 110.70789 * 154.03763 * 6 5 4 39 39 H 1.09000 * 109.46999 * 56.89639 * 9 7 3 40 40 H 1.08998 * 109.47072 * 296.89984 * 9 7 3 41 41 H 0.96999 * 119.99806 * 4.90612 * 10 9 7 42 42 H 0.96998 * 120.00021 * 5.26186 * 13 11 10 43 43 H 1.08007 * 120.66289 * 359.95511 * 15 14 13 44 44 H 0.96995 * 119.99523 * 179.97438 * 20 19 17 45 45 H 1.07993 * 120.43831 * 179.97438 * 25 16 15 46 46 H 1.07990 * 119.37423 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4585 2.1453 1.1371 5 6 2.5796 3.1341 1.5435 6 6 3.8512 2.2719 1.3275 7 6 3.4909 1.4251 0.0888 8 1 3.9042 1.8836 -0.8097 9 6 4.0416 0.0068 0.2497 10 7 5.5060 0.0501 0.2626 11 6 6.2137 -1.0964 0.2953 12 16 5.4016 -2.6032 0.3224 13 7 7.5608 -1.0566 0.3067 14 6 8.2937 -2.2403 0.2355 15 6 9.6755 -2.1864 0.1327 16 6 10.3954 -3.3946 0.0627 17 6 11.8069 -3.3970 -0.0436 18 1 12.3790 -4.2087 0.3809 19 6 12.4614 -2.3469 -0.6992 20 7 13.7588 -2.2202 -0.5973 21 14 11.4810 -1.1270 -1.7191 22 1 11.1032 0.0339 -0.8739 23 1 12.3074 -0.6598 -2.8611 24 1 10.2534 -1.7856 -2.2332 25 6 9.6673 -4.6033 0.1017 26 6 8.3061 -4.5566 0.2043 27 7 7.6630 -3.4050 0.2723 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 0.5668 2.6896 0.8263 34 1 1.2239 1.4743 1.9635 35 1 2.5849 4.0077 0.8917 36 1 2.4805 3.4287 2.5882 37 1 4.0347 1.6327 2.1912 38 1 4.7155 2.9042 1.1240 39 1 3.7037 -0.6108 -0.5825 40 1 3.6825 -0.4183 1.1869 41 1 5.9661 0.9039 0.2475 42 1 8.0204 -0.2046 0.3684 43 1 10.1893 -1.2368 0.1066 44 1 14.2121 -1.4931 -1.0517 45 1 10.1797 -5.5526 0.0503 46 1 7.7452 -5.4789 0.2349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763168280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:45 Heat of formation + Delta-G solvation = 60.405373 kcal Electronic energy + Delta-G solvation = -26102.569550 eV Core-core repulsion = 22539.206722 eV Total energy + Delta-G solvation = -3563.362827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 19.87 seconds Orbital eigenvalues (eV) -41.33061 -40.79700 -39.11140 -36.48023 -35.65116 -34.29264 -33.18770 -31.92788 -30.34828 -29.47877 -28.02818 -26.33604 -25.12513 -24.26465 -23.86133 -22.85993 -21.98739 -20.75011 -19.79526 -19.61107 -18.30156 -17.65855 -17.29045 -16.86072 -16.72129 -16.34077 -16.09447 -15.98939 -15.83931 -15.59314 -15.17000 -14.87593 -14.75621 -14.46690 -14.00346 -13.78150 -13.54701 -13.24912 -13.14498 -12.77588 -12.64799 -12.57323 -12.42482 -12.24305 -12.09802 -12.07589 -12.00398 -11.82084 -11.77170 -11.65676 -11.30900 -10.98352 -10.41034 -10.09947 -9.35191 -9.21939 -8.94901 -8.77420 -7.14084 -6.70668 -0.00661 0.78737 0.95568 0.98304 1.19381 1.39805 1.45265 1.48526 2.06760 2.42854 2.68712 2.98995 3.42029 3.54205 3.64134 3.73368 3.91715 4.10827 4.17481 4.22689 4.33246 4.36403 4.41113 4.46426 4.55363 4.61345 4.62063 4.69295 4.73765 4.87677 4.89764 4.98645 5.01875 5.05237 5.11447 5.14761 5.20955 5.23675 5.29269 5.33673 5.47618 5.71504 5.80242 5.96505 6.02594 6.10019 6.24590 6.32815 6.55169 6.69264 7.65201 8.12706 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019520 B = 0.002774 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.088803 B =10093.028949 C =11093.487299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.034 3.966 3 N -0.521 5.521 4 C 0.037 3.963 5 C -0.124 4.124 6 C -0.142 4.142 7 C 0.066 3.934 8 H 0.099 0.901 9 C 0.120 3.880 10 N -0.661 5.661 11 C 0.551 3.449 12 S -0.615 6.615 13 N -0.605 5.605 14 C 0.346 3.654 15 C -0.314 4.314 16 C 0.110 3.890 17 C -0.470 4.470 18 H 0.065 0.935 19 C 0.049 3.951 20 N -0.841 5.841 21 Si 0.969 3.031 22 H -0.244 1.244 23 H -0.280 1.280 24 H -0.262 1.262 25 C -0.266 4.266 26 C 0.117 3.883 27 N -0.495 5.495 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.412 0.588 42 H 0.420 0.580 43 H 0.116 0.884 44 H 0.297 0.703 45 H 0.118 0.882 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.819 16.000 1.751 26.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.094 4.094 3 N -0.246 5.246 4 C -0.090 4.090 5 C -0.162 4.162 6 C -0.181 4.181 7 C -0.043 4.043 8 H 0.117 0.883 9 C -0.004 4.004 10 N -0.293 5.293 11 C 0.192 3.808 12 S -0.486 6.486 13 N -0.231 5.231 14 C 0.114 3.886 15 C -0.340 4.340 16 C 0.102 3.898 17 C -0.501 4.501 18 H 0.083 0.917 19 C -0.167 4.167 20 N -0.467 5.467 21 Si 0.792 3.208 22 H -0.169 1.169 23 H -0.207 1.207 24 H -0.186 1.186 25 C -0.289 4.289 26 C -0.036 4.036 27 N -0.213 5.213 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.252 0.748 42 H 0.261 0.739 43 H 0.133 0.867 44 H 0.107 0.893 45 H 0.136 0.864 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -22.371 15.275 1.335 27.121 hybrid contribution 2.471 0.976 0.337 2.678 sum -19.900 16.251 1.673 25.747 Atomic orbital electron populations 1.21797 0.93736 1.02295 1.02535 1.22374 0.96973 0.89087 1.00975 1.63950 1.04261 1.13187 1.43201 1.23179 0.98810 0.95650 0.91399 1.22688 0.93003 0.97927 1.02541 1.22966 0.99895 0.98535 0.96656 1.22701 0.88968 0.92498 1.00119 0.88327 1.22337 0.75740 0.98898 1.03471 1.44873 1.08232 1.05241 1.70967 1.21980 0.84028 0.93382 0.81364 1.93115 1.66106 1.18308 1.71066 1.42013 1.03283 1.09127 1.68662 1.18216 0.86818 0.86434 0.97085 1.21303 0.92153 0.98852 1.21668 1.17841 0.93198 0.91502 0.87274 1.19460 0.90483 1.07014 1.33166 0.91675 1.26835 0.95845 0.98198 0.95801 1.69635 1.10958 1.30438 1.35697 0.85459 0.78682 0.78555 0.78061 1.16932 1.20695 1.18611 1.22007 0.95431 0.98161 1.13286 1.22469 0.91160 0.96582 0.93366 1.70250 1.34411 0.96255 1.20389 0.92054 0.91919 0.91777 0.90974 0.94571 0.89279 0.93483 0.89909 0.89636 0.91648 0.88888 0.90158 0.90982 0.74827 0.73928 0.86663 0.89253 0.86439 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.72 71.98 0.70 -1.28 16 2 C 0.03 0.56 4.45 86.30 0.38 0.94 16 3 N -0.52 -7.73 5.27 -860.52 -4.53 -12.26 16 4 C 0.04 0.43 5.34 86.77 0.46 0.89 16 5 C -0.12 -1.13 7.08 31.98 0.23 -0.90 16 6 C -0.14 -1.48 5.99 31.78 0.19 -1.29 16 7 C 0.07 0.91 3.53 45.26 0.16 1.07 16 8 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 9 C 0.12 2.31 3.19 86.38 0.28 2.59 16 10 N -0.66 -13.39 5.40 -350.17 -1.89 -15.28 16 11 C 0.55 17.18 7.95 179.06 1.42 18.60 16 12 S -0.62 -25.13 25.29 -56.49 -1.43 -26.56 16 13 N -0.60 -19.51 5.39 -195.14 -1.05 -20.56 16 14 C 0.35 14.61 7.40 132.78 0.98 15.59 16 15 C -0.31 -14.05 6.95 23.00 0.16 -13.89 16 16 C 0.11 5.47 5.16 -21.12 -0.11 5.36 16 17 C -0.47 -25.18 9.67 23.52 0.23 -24.95 16 18 H 0.07 3.75 8.06 -2.91 -0.02 3.73 16 19 C 0.05 2.50 5.48 85.29 0.47 2.97 16 20 N -0.84 -43.70 13.92 21.84 0.30 -43.40 16 21 Si 0.97 39.82 24.42 68.60 1.68 41.50 16 22 H -0.24 -8.79 6.67 99.48 0.66 -8.13 16 23 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.26 -11.46 6.64 99.48 0.66 -10.80 16 25 C -0.27 -12.22 9.85 22.60 0.22 -12.00 16 26 C 0.12 5.14 11.10 84.27 0.94 6.08 16 27 N -0.49 -22.43 6.08 -194.29 -1.18 -23.61 16 28 H 0.06 0.73 6.81 -2.39 -0.02 0.71 16 29 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.36 6.88 -2.39 -0.02 1.34 16 32 H 0.04 0.67 6.36 -2.39 -0.02 0.66 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.58 7.39 -2.39 -0.02 0.56 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 0.82 7.80 -2.39 -0.02 0.80 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 1.90 6.14 -2.39 -0.01 1.88 16 40 H 0.07 1.61 6.77 -2.39 -0.02 1.59 16 41 H 0.41 5.33 8.21 -92.71 -0.76 4.57 16 42 H 0.42 10.06 8.72 -92.71 -0.81 9.25 16 43 H 0.12 4.83 4.43 -2.91 -0.01 4.81 16 44 H 0.30 13.75 8.29 -92.71 -0.77 12.98 16 45 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 46 H 0.15 5.87 8.06 -2.92 -0.02 5.85 16 Total: -1.00 -67.98 368.05 -2.04 -70.02 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.64 Total: 30.36 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 6.71 Total: -0.21 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -8.35 Total: -115.11 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 1.68 Total: 41.50 kcal Atomic # 16 Polarization: -25.13 SS G_CDS: -1.43 Total: -26.56 kcal Total: -67.98 -2.04 -70.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763168280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.427 kcal (2) G-P(sol) polarization free energy of solvation -67.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.87 seconds