Wall clock time and date at job start Tue Mar 31 2020 23:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99907 * 2 1 4 4 H 1.48505 * 109.47131 * 239.99942 * 3 2 1 5 5 H 1.48497 * 109.47491 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47167 * 120.00293 * 3 2 1 7 7 C 1.37875 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99902 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00471 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47439 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47283 * 55.00073 * 10 9 7 12 12 N 1.46496 * 109.47246 * 295.00322 * 10 9 7 13 13 C 1.34777 * 120.00258 * 155.00083 * 12 10 9 14 14 O 1.21579 * 119.99978 * 359.97438 * 13 12 10 15 15 N 1.34784 * 119.99908 * 179.97438 * 13 12 10 16 16 O 1.41597 * 119.99894 * 179.97438 * 15 13 12 17 17 C 1.42901 * 114.00086 * 179.97438 * 16 15 13 18 18 C 1.53173 * 109.54498 * 274.55975 * 17 16 15 19 19 C 1.53088 * 109.16526 * 183.15192 * 18 17 16 20 20 O 1.42912 * 109.41371 * 57.60489 * 19 18 17 21 21 C 1.42901 * 114.09678 * 298.84484 * 20 19 18 22 22 C 1.53084 * 109.41655 * 61.15724 * 21 20 19 23 23 C 1.50696 * 109.47522 * 174.99704 * 10 9 7 24 24 C 1.38236 * 119.99802 * 79.72682 * 23 10 9 25 25 C 1.38242 * 120.00141 * 179.79215 * 24 23 10 26 26 C 1.38232 * 119.99627 * 0.44159 * 25 24 23 27 27 C 1.38232 * 119.99889 * 359.81024 * 26 25 24 28 28 C 1.38225 * 120.00662 * 359.97438 * 27 26 25 29 29 H 0.96995 * 119.99952 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47090 * 59.99770 * 9 7 2 31 31 H 1.09000 * 109.46887 * 300.00365 * 9 7 2 32 32 H 0.96999 * 119.99694 * 334.99473 * 12 10 9 33 33 H 0.96995 * 120.00015 * 359.72369 * 15 13 12 34 34 H 1.09005 * 109.53735 * 34.82475 * 17 16 15 35 35 H 1.09008 * 109.52043 * 303.05723 * 18 17 16 36 36 H 1.08999 * 109.52474 * 63.24479 * 18 17 16 37 37 H 1.08995 * 109.47869 * 297.62753 * 19 18 17 38 38 H 1.09000 * 109.48270 * 177.58706 * 19 18 17 39 39 H 1.09005 * 109.48056 * 301.17532 * 21 20 19 40 40 H 1.09003 * 109.48895 * 181.14582 * 21 20 19 41 41 H 1.09001 * 109.52546 * 182.48213 * 22 21 20 42 42 H 1.09000 * 109.52205 * 62.29752 * 22 21 20 43 43 H 1.08001 * 120.00085 * 359.97438 * 24 23 10 44 44 H 1.07997 * 119.99779 * 180.27319 * 25 24 23 45 45 H 1.07996 * 119.99638 * 179.83667 * 26 25 24 46 46 H 1.08007 * 119.99514 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.00946 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9293 -3.5553 0.8413 12 7 3.0063 -3.6540 -1.2523 13 6 4.2309 -4.2147 -1.3000 14 8 4.7043 -4.7268 -0.3042 15 7 4.9309 -4.2076 -2.4519 16 8 6.2177 -4.7962 -2.5019 17 6 6.8436 -4.7171 -3.7842 18 6 6.3857 -5.8938 -4.6513 19 6 7.1205 -5.8449 -5.9934 20 8 8.5307 -5.8776 -5.7643 21 6 9.0232 -4.7760 -4.9988 22 6 8.3648 -4.7820 -3.6167 23 6 1.4959 -4.9637 0.1234 24 6 0.8894 -5.5204 -0.9871 25 6 0.2056 -6.7166 -0.8744 26 6 0.1206 -7.3513 0.3506 27 6 0.7227 -6.7919 1.4621 28 6 1.4101 -5.5981 1.3486 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5570 0.8897 32 1 2.6287 -3.2451 -2.0467 33 1 4.5516 -3.8025 -3.2474 34 1 6.5695 -3.7787 -4.2663 35 1 6.6153 -6.8310 -4.1442 36 1 5.3113 -5.8244 -4.8215 37 1 6.8587 -4.9259 -6.5178 38 1 6.8304 -6.7041 -6.5982 39 1 8.7862 -3.8431 -5.5102 40 1 10.1038 -4.8650 -4.8870 41 1 8.7058 -3.9176 -3.0470 42 1 8.6344 -5.6967 -3.0888 43 1 0.9523 -5.0224 -1.9434 44 1 -0.2644 -7.1538 -1.7429 45 1 -0.4158 -8.2844 0.4392 46 1 0.6565 -7.2880 2.4192 47 1 1.8802 -5.1608 2.2170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773406598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:16 Heat of formation + Delta-G solvation = -51.478689 kcal Electronic energy + Delta-G solvation = -28749.072391 eV Core-core repulsion = 24705.812284 eV Total energy + Delta-G solvation = -4043.260107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.98633 -39.57252 -38.52248 -37.13134 -35.10504 -33.33774 -32.75153 -31.67661 -31.53898 -30.49392 -29.95546 -28.62258 -25.00484 -24.60489 -23.99143 -22.28835 -21.95915 -21.29861 -20.73881 -19.80715 -18.43275 -17.79204 -16.72106 -16.55221 -16.42743 -16.14519 -15.54371 -15.25046 -15.06320 -14.86181 -14.58372 -14.39928 -14.15416 -14.04287 -13.56344 -13.33070 -13.08268 -12.95159 -12.75964 -12.53217 -12.40162 -12.10167 -11.72940 -11.60363 -11.50824 -11.13729 -11.00084 -10.89619 -10.72234 -10.69994 -10.60918 -10.44901 -10.09034 -9.79004 -9.71507 -9.32375 -8.79503 -8.51947 -8.46217 -8.34968 -8.16300 -6.10449 -4.13852 1.70613 1.83408 1.92382 3.26902 3.32561 3.35674 3.46472 3.67642 4.04269 4.25069 4.29575 4.37059 4.38544 4.53749 4.61059 4.64118 4.79993 5.03200 5.18735 5.26035 5.26182 5.28377 5.28667 5.29776 5.39357 5.40325 5.56105 5.59696 5.73054 5.83322 5.93059 5.96447 6.12880 6.36797 6.43486 6.58365 6.76616 6.85906 6.87575 6.88519 6.95762 7.08538 7.20677 7.43286 7.49304 7.65301 7.86602 8.24343 8.41052 8.92084 9.07394 9.51162 11.00018 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008082 B = 0.003528 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3463.530988 B = 7934.562580 C =10598.484932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.206 3.794 11 H 0.089 0.911 12 N -0.708 5.708 13 C 0.720 3.280 14 O -0.578 6.578 15 N -0.620 5.620 16 O -0.120 6.120 17 C 0.061 3.939 18 C -0.180 4.180 19 C 0.064 3.936 20 O -0.382 6.382 21 C 0.067 3.933 22 C -0.148 4.148 23 C -0.073 4.073 24 C -0.106 4.106 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.107 4.107 29 H 0.262 0.738 30 H 0.025 0.975 31 H 0.037 0.963 32 H 0.397 0.603 33 H 0.400 0.600 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.107 -11.217 -11.207 18.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.102 3.898 11 H 0.107 0.893 12 N -0.364 5.364 13 C 0.420 3.580 14 O -0.454 6.454 15 N -0.327 5.327 16 O -0.123 6.123 17 C 0.002 3.998 18 C -0.218 4.218 19 C -0.013 4.013 20 O -0.301 6.301 21 C -0.010 4.010 22 C -0.187 4.187 23 C -0.074 4.074 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.125 4.125 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.231 0.769 33 H 0.239 0.761 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.622 -11.805 -10.161 18.308 hybrid contribution -0.132 1.602 -0.901 1.842 sum 9.490 -10.203 -11.062 17.792 Atomic orbital electron populations 1.69948 1.05997 1.26923 1.50231 1.24981 0.94790 0.99189 0.95145 0.86652 0.79533 0.83079 0.78691 1.20370 1.21326 1.20179 1.21115 0.93119 0.90372 1.51314 0.92356 1.19407 0.93150 0.90054 0.98709 1.20182 0.92766 0.91847 0.85034 0.89326 1.44989 1.15186 1.61217 1.15036 1.15479 0.80863 0.79778 0.81855 1.90902 1.69955 1.50883 1.33629 1.46313 1.09227 1.64299 1.12818 1.90607 1.16447 1.76421 1.28848 1.22588 0.93616 0.98193 0.85398 1.22794 1.01413 1.00534 0.97087 1.22576 0.80776 1.02420 0.95532 1.87955 1.22359 1.46702 1.73048 1.22583 0.99246 0.89687 0.89534 1.22253 0.92247 1.05031 0.99194 1.20583 0.96747 0.96686 0.93378 1.20881 0.97563 0.95573 0.98452 1.21029 1.00044 0.96013 0.97330 1.20989 1.01053 1.00006 0.93241 1.21039 0.98564 0.96197 0.98300 1.21024 0.98958 0.95050 0.97475 0.92806 0.95648 0.94452 0.76877 0.76094 0.90548 0.89767 0.90263 0.92912 0.88332 0.92764 0.87921 0.89486 0.89599 0.86660 0.86816 0.86879 0.86600 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -13.57 8.84 -34.44 -0.30 -13.88 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.57 4.49 -27.89 -0.13 0.44 16 10 C 0.21 4.18 2.11 -69.09 -0.15 4.04 16 11 H 0.09 1.99 7.44 -51.93 -0.39 1.61 16 12 N -0.71 -12.70 4.05 -59.82 -0.24 -12.94 16 13 C 0.72 13.61 8.67 -86.91 -0.75 12.86 16 14 O -0.58 -13.50 16.41 -12.85 -0.21 -13.71 16 15 N -0.62 -9.21 6.38 27.63 0.18 -9.03 16 16 O -0.12 -1.81 10.76 -29.62 -0.32 -2.13 16 17 C 0.06 0.63 2.83 -26.55 -0.08 0.55 16 18 C -0.18 -1.62 5.79 -26.60 -0.15 -1.78 16 19 C 0.06 0.49 6.84 37.20 0.25 0.74 16 20 O -0.38 -3.57 10.77 -35.23 -0.38 -3.95 16 21 C 0.07 0.49 6.84 37.20 0.25 0.75 16 22 C -0.15 -1.34 5.79 -26.60 -0.15 -1.49 16 23 C -0.07 -1.35 4.91 -104.62 -0.51 -1.87 16 24 C -0.11 -1.78 9.32 -39.58 -0.37 -2.15 16 25 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 26 C -0.13 -1.94 10.05 -39.59 -0.40 -2.34 16 27 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 28 C -0.11 -1.88 9.67 -39.59 -0.38 -2.26 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.40 6.26 8.62 -40.82 -0.35 5.91 16 33 H 0.40 4.42 8.44 -40.82 -0.34 4.08 16 34 H 0.08 0.67 7.94 -51.93 -0.41 0.26 16 35 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.12 1.77 7.73 -52.49 -0.41 1.37 16 44 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 46 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 47 H 0.12 2.05 8.04 -52.49 -0.42 1.62 16 LS Contribution 394.07 15.07 5.94 5.94 Total: -1.00 -33.77 394.07 -10.44 -44.21 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.36 Total: 9.72 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -3.76 Total: -9.41 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.67 Total: -46.45 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.91 Total: -19.79 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.77 -10.44 -44.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773406598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.270 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds