Wall clock time and date at job start Tue Mar 31 2020 23:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99907 * 2 1 4 4 H 1.48505 * 109.47131 * 239.99942 * 3 2 1 5 5 H 1.48497 * 109.47491 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47167 * 120.00293 * 3 2 1 7 7 C 1.37875 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99902 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00471 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47439 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47283 * 55.00073 * 10 9 7 12 12 N 1.46496 * 109.47246 * 295.00322 * 10 9 7 13 13 C 1.34777 * 120.00258 * 155.00083 * 12 10 9 14 14 O 1.21579 * 119.99978 * 359.97438 * 13 12 10 15 15 N 1.34784 * 119.99908 * 179.97438 * 13 12 10 16 16 O 1.41597 * 119.99894 * 179.97438 * 15 13 12 17 17 C 1.42901 * 114.00086 * 179.97438 * 16 15 13 18 18 C 1.53173 * 109.54498 * 274.55975 * 17 16 15 19 19 C 1.53088 * 109.16526 * 183.15192 * 18 17 16 20 20 O 1.42912 * 109.41371 * 57.60489 * 19 18 17 21 21 C 1.42901 * 114.09678 * 298.84484 * 20 19 18 22 22 C 1.53084 * 109.41655 * 61.15724 * 21 20 19 23 23 C 1.50696 * 109.47522 * 174.99704 * 10 9 7 24 24 C 1.38236 * 119.99802 * 79.72682 * 23 10 9 25 25 C 1.38242 * 120.00141 * 179.79215 * 24 23 10 26 26 C 1.38232 * 119.99627 * 0.44159 * 25 24 23 27 27 C 1.38232 * 119.99889 * 359.81024 * 26 25 24 28 28 C 1.38225 * 120.00662 * 359.97438 * 27 26 25 29 29 H 0.96995 * 119.99952 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47090 * 59.99770 * 9 7 2 31 31 H 1.09000 * 109.46887 * 300.00365 * 9 7 2 32 32 H 0.96999 * 119.99694 * 334.99473 * 12 10 9 33 33 H 0.96995 * 120.00015 * 359.72369 * 15 13 12 34 34 H 1.09005 * 109.53735 * 34.82475 * 17 16 15 35 35 H 1.09008 * 109.52043 * 303.05723 * 18 17 16 36 36 H 1.08999 * 109.52474 * 63.24479 * 18 17 16 37 37 H 1.08995 * 109.47869 * 297.62753 * 19 18 17 38 38 H 1.09000 * 109.48270 * 177.58706 * 19 18 17 39 39 H 1.09005 * 109.48056 * 301.17532 * 21 20 19 40 40 H 1.09003 * 109.48895 * 181.14582 * 21 20 19 41 41 H 1.09001 * 109.52546 * 182.48213 * 22 21 20 42 42 H 1.09000 * 109.52205 * 62.29752 * 22 21 20 43 43 H 1.08001 * 120.00085 * 359.97438 * 24 23 10 44 44 H 1.07997 * 119.99779 * 180.27319 * 25 24 23 45 45 H 1.07996 * 119.99638 * 179.83667 * 26 25 24 46 46 H 1.08007 * 119.99514 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.00946 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9293 -3.5553 0.8413 12 7 3.0063 -3.6540 -1.2523 13 6 4.2309 -4.2147 -1.3000 14 8 4.7043 -4.7268 -0.3042 15 7 4.9309 -4.2076 -2.4519 16 8 6.2177 -4.7962 -2.5019 17 6 6.8436 -4.7171 -3.7842 18 6 6.3857 -5.8938 -4.6513 19 6 7.1205 -5.8449 -5.9934 20 8 8.5307 -5.8776 -5.7643 21 6 9.0232 -4.7760 -4.9988 22 6 8.3648 -4.7820 -3.6167 23 6 1.4959 -4.9637 0.1234 24 6 0.8894 -5.5204 -0.9871 25 6 0.2056 -6.7166 -0.8744 26 6 0.1206 -7.3513 0.3506 27 6 0.7227 -6.7919 1.4621 28 6 1.4101 -5.5981 1.3486 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5570 0.8897 32 1 2.6287 -3.2451 -2.0467 33 1 4.5516 -3.8025 -3.2474 34 1 6.5695 -3.7787 -4.2663 35 1 6.6153 -6.8310 -4.1442 36 1 5.3113 -5.8244 -4.8215 37 1 6.8587 -4.9259 -6.5178 38 1 6.8304 -6.7041 -6.5982 39 1 8.7862 -3.8431 -5.5102 40 1 10.1038 -4.8650 -4.8870 41 1 8.7058 -3.9176 -3.0470 42 1 8.6344 -5.6967 -3.0888 43 1 0.9523 -5.0224 -1.9434 44 1 -0.2644 -7.1538 -1.7429 45 1 -0.4158 -8.2844 0.4392 46 1 0.6565 -7.2880 2.4192 47 1 1.8802 -5.1608 2.2170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773406598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:15 Heat of formation + Delta-G solvation = -72.282015 kcal Electronic energy + Delta-G solvation = -28749.974490 eV Core-core repulsion = 24705.812284 eV Total energy + Delta-G solvation = -4044.162206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.23040 -40.55035 -39.78713 -38.20433 -36.71952 -34.78666 -34.33655 -32.95698 -32.18448 -31.72494 -31.19512 -30.38465 -26.67219 -25.44869 -24.66230 -23.78382 -23.41183 -22.64085 -21.62462 -21.23535 -19.64274 -19.13099 -18.51444 -17.61749 -17.32420 -17.09401 -16.86435 -16.51156 -16.39633 -16.06203 -15.85015 -15.65281 -15.38167 -15.02069 -14.70428 -14.55065 -14.47001 -14.16452 -14.12118 -13.68315 -13.64781 -13.42401 -13.28177 -12.90436 -12.63885 -12.44171 -12.38371 -12.33206 -12.14722 -11.85932 -11.70692 -11.58017 -11.48198 -11.33126 -11.29961 -10.72604 -10.56634 -10.23961 -9.75691 -9.70668 -9.49739 -8.18293 -6.28124 0.44978 0.58707 0.68958 1.40876 1.43543 1.50942 2.16681 2.41558 2.78415 2.90311 3.04519 3.16709 3.47087 3.61226 3.63260 3.89409 3.89856 4.00495 4.05961 4.20656 4.23133 4.34339 4.42840 4.43955 4.46365 4.60508 4.66856 4.69225 4.75609 4.77038 4.80645 4.97486 5.00781 5.09122 5.14451 5.21963 5.26938 5.43803 5.60422 5.63208 5.64447 5.66416 5.80384 5.88811 6.07359 6.17842 6.18569 6.23148 6.84246 7.05437 7.40671 7.62961 8.92104 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008082 B = 0.003528 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3463.530988 B = 7934.562580 C =10598.484932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.039 3.961 10 C 0.222 3.778 11 H 0.057 0.943 12 N -0.699 5.699 13 C 0.719 3.281 14 O -0.627 6.627 15 N -0.602 5.602 16 O -0.148 6.148 17 C 0.052 3.948 18 C -0.175 4.175 19 C 0.065 3.935 20 O -0.401 6.401 21 C 0.069 3.931 22 C -0.147 4.147 23 C -0.099 4.099 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.130 4.130 27 C -0.125 4.125 28 C -0.133 4.133 29 H 0.264 0.736 30 H 0.017 0.983 31 H 0.008 0.992 32 H 0.408 0.592 33 H 0.419 0.581 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.124 0.876 44 H 0.147 0.853 45 H 0.150 0.850 46 H 0.143 0.857 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.290 -11.769 -13.293 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.002 3.998 10 C 0.117 3.883 11 H 0.076 0.924 12 N -0.356 5.356 13 C 0.420 3.580 14 O -0.507 6.507 15 N -0.309 5.309 16 O -0.152 6.152 17 C -0.006 4.006 18 C -0.213 4.213 19 C -0.012 4.012 20 O -0.320 6.320 21 C -0.008 4.008 22 C -0.186 4.186 23 C -0.101 4.101 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.148 4.148 27 C -0.143 4.143 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.026 0.974 32 H 0.244 0.756 33 H 0.262 0.738 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.090 0.910 40 H 0.135 0.865 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.142 0.858 44 H 0.164 0.836 45 H 0.168 0.832 46 H 0.160 0.840 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.811 -12.345 -12.319 20.010 hybrid contribution -0.175 1.698 -0.269 1.728 sum 9.636 -10.647 -12.588 19.096 Atomic orbital electron populations 1.70057 1.07391 1.27778 1.51248 1.25736 0.95532 1.02491 0.94805 0.85668 0.78358 0.79083 0.78899 1.19026 1.20897 1.20343 1.21377 0.93007 0.91601 1.50826 0.92876 1.19138 0.93142 0.90762 0.96779 1.19648 0.91570 0.92063 0.85015 0.92435 1.44715 1.15057 1.61183 1.14647 1.15521 0.80868 0.79399 0.82222 1.90863 1.71074 1.52982 1.35782 1.45910 1.09372 1.63353 1.12249 1.90614 1.15979 1.76569 1.32017 1.22949 0.93962 0.99718 0.83937 1.22748 1.02081 0.98943 0.97563 1.22687 0.79854 1.03984 0.94666 1.87936 1.23233 1.47647 1.73184 1.22701 0.99862 0.90005 0.88228 1.22291 0.91476 1.04373 1.00421 1.20478 0.98331 0.96458 0.94793 1.21075 0.97893 0.96636 0.98116 1.21442 0.99004 0.95015 0.98880 1.21466 0.99943 1.00914 0.92463 1.21379 0.97609 0.95168 1.00157 1.21189 1.00337 0.96606 0.97076 0.92716 0.96437 0.97415 0.75553 0.73775 0.88481 0.91737 0.89558 0.91040 0.87147 0.91000 0.86467 0.89217 0.91175 0.85820 0.83554 0.83192 0.83959 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.06 13.29 21.45 0.28 -52.77 16 2 C 0.01 0.72 5.46 84.65 0.46 1.18 16 3 Si 0.95 42.75 29.54 68.60 2.03 44.77 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.53 -28.30 8.84 25.60 0.23 -28.08 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.04 1.93 4.49 29.85 0.13 2.07 16 10 C 0.22 9.48 2.11 44.24 0.09 9.58 16 11 H 0.06 2.79 7.44 -2.39 -0.02 2.77 16 12 N -0.70 -25.68 4.05 -461.43 -1.87 -27.55 16 13 C 0.72 27.76 8.67 179.05 1.55 29.31 16 14 O -0.63 -30.44 16.41 13.39 0.22 -30.22 16 15 N -0.60 -17.62 6.38 -184.74 -1.18 -18.80 16 16 O -0.15 -4.43 10.76 -21.43 -0.23 -4.67 16 17 C 0.05 1.01 2.83 30.71 0.09 1.10 16 18 C -0.18 -2.93 5.79 30.68 0.18 -2.75 16 19 C 0.06 0.84 6.84 72.01 0.49 1.33 16 20 O -0.40 -6.74 10.77 -148.98 -1.60 -8.34 16 21 C 0.07 0.88 6.84 72.01 0.49 1.37 16 22 C -0.15 -2.50 5.79 30.68 0.18 -2.33 16 23 C -0.10 -3.82 4.91 -19.87 -0.10 -3.92 16 24 C -0.12 -3.93 9.32 22.27 0.21 -3.73 16 25 C -0.13 -3.45 10.05 22.27 0.22 -3.22 16 26 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 27 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16 28 C -0.13 -4.87 9.67 22.27 0.22 -4.65 16 29 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.41 12.92 8.62 -92.71 -0.80 12.12 16 33 H 0.42 8.69 8.44 -92.71 -0.78 7.91 16 34 H 0.10 1.47 7.94 -2.38 -0.02 1.45 16 35 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.12 3.73 7.73 -2.91 -0.02 3.71 16 44 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 45 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 46 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 47 H 0.11 4.11 8.04 -2.91 -0.02 4.08 16 Total: -1.00 -75.16 394.07 1.94 -73.22 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: -0.60 Total: 33.74 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.89 Total: -9.38 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -2.76 Total: -99.13 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -1.61 Total: -43.23 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -75.16 1.94 -73.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773406598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.937 kcal (2) G-P(sol) polarization free energy of solvation -75.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds