Wall clock time and date at job start Tue Mar 31 2020 23:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46500 * 109.47466 * 64.99479 * 10 9 7 13 13 C 1.34771 * 120.00556 * 205.00158 * 12 10 9 14 14 O 1.21596 * 119.99804 * 0.02562 * 13 12 10 15 15 N 1.34775 * 120.00181 * 179.97438 * 13 12 10 16 16 O 1.41598 * 119.99669 * 179.97438 * 15 13 12 17 17 C 1.42905 * 113.99924 * 180.02562 * 16 15 13 18 18 C 1.53180 * 109.54257 * 274.55913 * 17 16 15 19 19 C 1.53097 * 109.16084 * 183.14918 * 18 17 16 20 20 O 1.42908 * 109.41360 * 57.60732 * 19 18 17 21 21 C 1.42902 * 114.09867 * 298.84326 * 20 19 18 22 22 C 1.53088 * 109.41775 * 61.15468 * 21 20 19 23 23 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 24 24 C 1.38233 * 119.99377 * 279.72159 * 23 10 9 25 25 C 1.38237 * 119.99600 * 179.78842 * 24 23 10 26 26 C 1.38241 * 119.99990 * 0.44354 * 25 24 23 27 27 C 1.38237 * 119.99716 * 359.81238 * 26 25 24 28 28 C 1.38228 * 120.00326 * 99.99831 * 23 10 9 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 0.97002 * 119.99373 * 25.00408 * 12 10 9 33 33 H 0.96998 * 120.00237 * 0.02562 * 15 13 12 34 34 H 1.09002 * 109.53929 * 34.82424 * 17 16 15 35 35 H 1.08996 * 109.52096 * 303.05014 * 18 17 16 36 36 H 1.08997 * 109.51983 * 63.24834 * 18 17 16 37 37 H 1.08998 * 109.48234 * 297.62512 * 19 18 17 38 38 H 1.08994 * 109.47917 * 177.59209 * 19 18 17 39 39 H 1.09005 * 109.47854 * 301.17410 * 21 20 19 40 40 H 1.08994 * 109.48797 * 181.14872 * 21 20 19 41 41 H 1.09003 * 109.52622 * 182.48435 * 22 21 20 42 42 H 1.09007 * 109.51889 * 62.30008 * 22 21 20 43 43 H 1.07995 * 120.00514 * 359.97438 * 24 23 10 44 44 H 1.08001 * 120.00058 * 180.28006 * 25 24 23 45 45 H 1.07995 * 120.00194 * 179.83256 * 26 25 24 46 46 H 1.08001 * 119.99824 * 180.02562 * 27 26 25 47 47 H 1.08005 * 119.99906 * 359.97438 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 7 3.0061 -3.6596 1.2414 13 6 4.2307 -4.2205 1.2868 14 8 4.7042 -4.7283 0.2885 15 7 4.9310 -4.2177 2.4383 16 8 6.2174 -4.8074 2.4860 17 6 6.8438 -4.7330 3.7683 18 6 7.5681 -3.3905 3.9076 19 6 8.3008 -3.3518 5.2513 20 8 9.2108 -4.4511 5.3278 21 6 8.5847 -5.7333 5.2509 22 6 7.8633 -5.8676 3.9073 23 6 1.4956 -4.9631 -0.1402 24 6 0.8988 -5.5305 0.9701 25 6 0.2076 -6.7217 0.8503 26 6 0.1211 -7.3501 -0.3780 27 6 0.7225 -6.7853 -1.4872 28 6 1.4099 -5.5920 -1.3682 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.6285 -3.2543 2.0376 33 1 4.5535 -3.8123 3.2346 34 1 6.0884 -4.8239 4.5489 35 1 8.2881 -3.2792 3.0968 36 1 6.8419 -2.5787 3.8653 37 1 7.5764 -3.4225 6.0626 38 1 8.8531 -2.4161 5.3373 39 1 7.8639 -5.8352 6.0622 40 1 9.3413 -6.5132 5.3368 41 1 7.3483 -6.8274 3.8646 42 1 8.5893 -5.8064 3.0964 43 1 0.9699 -5.0417 1.9305 44 1 -0.2626 -7.1627 1.7168 45 1 -0.4166 -8.2820 -0.4711 46 1 0.6545 -7.2760 -2.4469 47 1 1.8797 -5.1507 -2.2348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773406601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:31 Heat of formation + Delta-G solvation = -51.480749 kcal Electronic energy + Delta-G solvation = -28739.970237 eV Core-core repulsion = 24696.710041 eV Total energy + Delta-G solvation = -4043.260196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -39.97950 -39.57010 -38.52235 -37.12759 -35.10439 -33.33367 -32.75132 -31.67253 -31.52388 -30.49749 -29.95498 -28.62589 -25.00379 -24.59988 -23.97756 -22.28928 -21.96442 -21.29528 -20.73427 -19.80802 -18.43102 -17.79025 -16.72947 -16.54238 -16.41990 -16.15196 -15.42051 -15.31376 -15.15931 -14.80832 -14.57973 -14.33797 -14.19881 -14.02524 -13.55472 -13.34608 -13.05813 -12.94923 -12.76293 -12.54245 -12.39693 -12.10915 -11.71380 -11.58384 -11.52937 -11.13501 -10.95508 -10.93688 -10.74410 -10.68140 -10.57256 -10.45599 -10.07579 -9.79324 -9.71654 -9.29561 -8.79445 -8.52488 -8.46780 -8.35108 -8.16539 -6.10774 -4.13915 1.70487 1.83054 1.92117 3.24549 3.33693 3.38333 3.47886 3.67642 4.04349 4.25195 4.30937 4.37685 4.38799 4.55205 4.60717 4.63751 4.80779 5.03573 5.19932 5.26113 5.26508 5.28261 5.29398 5.30341 5.39111 5.42053 5.55833 5.61621 5.74038 5.86691 5.92805 5.96104 6.12779 6.36483 6.43175 6.58239 6.78067 6.85644 6.87310 6.88231 6.95703 7.08458 7.20567 7.42952 7.49556 7.65175 7.86664 8.24285 8.40995 8.92603 9.07363 9.51251 10.99732 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007886 B = 0.003630 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3549.816765 B = 7711.106206 C =10683.358757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.206 3.794 11 H 0.089 0.911 12 N -0.708 5.708 13 C 0.720 3.280 14 O -0.578 6.578 15 N -0.620 5.620 16 O -0.121 6.121 17 C 0.062 3.938 18 C -0.182 4.182 19 C 0.064 3.936 20 O -0.382 6.382 21 C 0.067 3.933 22 C -0.148 4.148 23 C -0.072 4.072 24 C -0.106 4.106 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.107 4.107 29 H 0.261 0.739 30 H 0.025 0.975 31 H 0.037 0.963 32 H 0.397 0.603 33 H 0.400 0.600 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.908 -11.758 11.301 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.014 4.014 10 C 0.102 3.898 11 H 0.107 0.893 12 N -0.364 5.364 13 C 0.420 3.580 14 O -0.454 6.454 15 N -0.326 5.326 16 O -0.123 6.123 17 C 0.003 3.997 18 C -0.220 4.220 19 C -0.013 4.013 20 O -0.301 6.301 21 C -0.010 4.010 22 C -0.187 4.187 23 C -0.074 4.074 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.125 4.125 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.231 0.769 33 H 0.239 0.761 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.514 -12.173 10.203 18.515 hybrid contribution -0.254 1.412 0.953 1.722 sum 9.260 -10.761 11.156 18.055 Atomic orbital electron populations 1.69970 1.05999 1.26685 1.50417 1.24987 0.94788 0.99215 0.95167 0.86552 0.80192 0.83756 0.77618 1.19736 1.20949 1.21097 1.21193 0.93193 0.90333 1.51037 0.92240 1.19418 0.93165 0.90093 0.98719 1.20184 0.92758 0.91847 0.85036 0.89323 1.44987 1.15210 1.61325 1.14901 1.15479 0.80865 0.79763 0.81868 1.90906 1.69978 1.51066 1.33432 1.46308 1.08993 1.64551 1.12790 1.90608 1.16329 1.76327 1.29079 1.22581 0.94619 0.95753 0.86749 1.22809 1.01376 0.98100 0.99715 1.22582 0.92941 0.90367 0.95389 1.87957 1.34094 1.14017 1.93986 1.22573 0.97499 0.86030 0.94925 1.22253 0.98314 0.98224 0.99904 1.20583 0.96787 0.96656 0.93362 1.20878 0.97586 0.95575 0.98438 1.21031 0.99979 0.96104 0.97306 1.20992 1.01068 0.99998 0.93242 1.21042 0.98568 0.96185 0.98308 1.21023 0.98957 0.95064 0.97462 0.92931 0.95648 0.94436 0.76876 0.76093 0.90664 0.89693 0.90059 0.92931 0.88263 0.92837 0.87962 0.89601 0.89570 0.86660 0.86816 0.86879 0.86596 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.78 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -13.53 8.84 -34.44 -0.30 -13.83 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.55 4.50 -27.88 -0.13 0.43 16 10 C 0.21 4.18 2.12 -69.08 -0.15 4.03 16 11 H 0.09 1.99 7.44 -51.92 -0.39 1.61 16 12 N -0.71 -12.69 4.02 -59.81 -0.24 -12.93 16 13 C 0.72 13.61 8.67 -86.92 -0.75 12.86 16 14 O -0.58 -13.51 16.41 -12.87 -0.21 -13.72 16 15 N -0.62 -9.20 6.38 27.63 0.18 -9.02 16 16 O -0.12 -1.82 10.76 -29.62 -0.32 -2.13 16 17 C 0.06 0.64 2.83 -26.55 -0.08 0.56 16 18 C -0.18 -1.76 5.79 -26.59 -0.15 -1.91 16 19 C 0.06 0.52 6.84 37.21 0.25 0.77 16 20 O -0.38 -3.65 10.77 -35.23 -0.38 -4.03 16 21 C 0.07 0.49 6.84 37.20 0.25 0.74 16 22 C -0.15 -1.31 5.79 -26.60 -0.15 -1.46 16 23 C -0.07 -1.35 4.91 -104.63 -0.51 -1.86 16 24 C -0.11 -1.78 9.33 -39.58 -0.37 -2.15 16 25 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 26 C -0.13 -1.94 10.05 -39.58 -0.40 -2.33 16 27 C -0.12 -1.88 10.05 -39.59 -0.40 -2.27 16 28 C -0.11 -1.88 9.67 -39.59 -0.38 -2.26 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.40 6.24 8.62 -40.82 -0.35 5.89 16 33 H 0.40 4.41 8.44 -40.82 -0.34 4.06 16 34 H 0.08 0.63 7.94 -51.93 -0.41 0.22 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.12 1.77 7.71 -52.49 -0.40 1.37 16 44 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 46 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 47 H 0.12 2.04 8.04 -52.48 -0.42 1.62 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -33.87 394.04 -10.44 -44.31 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.36 Total: 9.71 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -3.76 Total: -9.45 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.67 Total: -46.41 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.91 Total: -19.88 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.87 -10.44 -44.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773406601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.173 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds