Wall clock time and date at job start Tue Mar 31 2020 23:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46500 * 109.47466 * 64.99479 * 10 9 7 13 13 C 1.34771 * 120.00556 * 205.00158 * 12 10 9 14 14 O 1.21596 * 119.99804 * 0.02562 * 13 12 10 15 15 N 1.34775 * 120.00181 * 179.97438 * 13 12 10 16 16 O 1.41598 * 119.99669 * 179.97438 * 15 13 12 17 17 C 1.42905 * 113.99924 * 180.02562 * 16 15 13 18 18 C 1.53180 * 109.54257 * 274.55913 * 17 16 15 19 19 C 1.53097 * 109.16084 * 183.14918 * 18 17 16 20 20 O 1.42908 * 109.41360 * 57.60732 * 19 18 17 21 21 C 1.42902 * 114.09867 * 298.84326 * 20 19 18 22 22 C 1.53088 * 109.41775 * 61.15468 * 21 20 19 23 23 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 24 24 C 1.38233 * 119.99377 * 279.72159 * 23 10 9 25 25 C 1.38237 * 119.99600 * 179.78842 * 24 23 10 26 26 C 1.38241 * 119.99990 * 0.44354 * 25 24 23 27 27 C 1.38237 * 119.99716 * 359.81238 * 26 25 24 28 28 C 1.38228 * 120.00326 * 99.99831 * 23 10 9 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 0.97002 * 119.99373 * 25.00408 * 12 10 9 33 33 H 0.96998 * 120.00237 * 0.02562 * 15 13 12 34 34 H 1.09002 * 109.53929 * 34.82424 * 17 16 15 35 35 H 1.08996 * 109.52096 * 303.05014 * 18 17 16 36 36 H 1.08997 * 109.51983 * 63.24834 * 18 17 16 37 37 H 1.08998 * 109.48234 * 297.62512 * 19 18 17 38 38 H 1.08994 * 109.47917 * 177.59209 * 19 18 17 39 39 H 1.09005 * 109.47854 * 301.17410 * 21 20 19 40 40 H 1.08994 * 109.48797 * 181.14872 * 21 20 19 41 41 H 1.09003 * 109.52622 * 182.48435 * 22 21 20 42 42 H 1.09007 * 109.51889 * 62.30008 * 22 21 20 43 43 H 1.07995 * 120.00514 * 359.97438 * 24 23 10 44 44 H 1.08001 * 120.00058 * 180.28006 * 25 24 23 45 45 H 1.07995 * 120.00194 * 179.83256 * 26 25 24 46 46 H 1.08001 * 119.99824 * 180.02562 * 27 26 25 47 47 H 1.08005 * 119.99906 * 359.97438 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 7 3.0061 -3.6596 1.2414 13 6 4.2307 -4.2205 1.2868 14 8 4.7042 -4.7283 0.2885 15 7 4.9310 -4.2177 2.4383 16 8 6.2174 -4.8074 2.4860 17 6 6.8438 -4.7330 3.7683 18 6 7.5681 -3.3905 3.9076 19 6 8.3008 -3.3518 5.2513 20 8 9.2108 -4.4511 5.3278 21 6 8.5847 -5.7333 5.2509 22 6 7.8633 -5.8676 3.9073 23 6 1.4956 -4.9631 -0.1402 24 6 0.8988 -5.5305 0.9701 25 6 0.2076 -6.7217 0.8503 26 6 0.1211 -7.3501 -0.3780 27 6 0.7225 -6.7853 -1.4872 28 6 1.4099 -5.5920 -1.3682 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.6285 -3.2543 2.0376 33 1 4.5535 -3.8123 3.2346 34 1 6.0884 -4.8239 4.5489 35 1 8.2881 -3.2792 3.0968 36 1 6.8419 -2.5787 3.8653 37 1 7.5764 -3.4225 6.0626 38 1 8.8531 -2.4161 5.3373 39 1 7.8639 -5.8352 6.0622 40 1 9.3413 -6.5132 5.3368 41 1 7.3483 -6.8274 3.8646 42 1 8.5893 -5.8064 3.0964 43 1 0.9699 -5.0417 1.9305 44 1 -0.2626 -7.1627 1.7168 45 1 -0.4166 -8.2820 -0.4711 46 1 0.6545 -7.2760 -2.4469 47 1 1.8797 -5.1507 -2.2348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773406601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:30 Heat of formation + Delta-G solvation = -72.416330 kcal Electronic energy + Delta-G solvation = -28740.878072 eV Core-core repulsion = 24696.710041 eV Total energy + Delta-G solvation = -4044.168031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.23047 -40.55157 -39.78459 -38.20514 -36.71922 -34.79003 -34.33842 -32.95750 -32.18586 -31.72248 -31.19292 -30.38847 -26.67557 -25.44910 -24.66444 -23.78240 -23.41242 -22.63974 -21.62791 -21.23384 -19.64493 -19.12923 -18.52549 -17.62125 -17.34270 -17.08728 -16.76650 -16.55918 -16.47565 -16.02590 -15.85720 -15.60223 -15.41489 -15.01825 -14.70754 -14.60024 -14.41369 -14.16334 -14.14132 -13.68483 -13.65567 -13.42313 -13.28073 -12.92050 -12.62135 -12.47071 -12.38774 -12.33657 -12.12834 -11.85735 -11.72216 -11.58009 -11.47498 -11.32789 -11.28295 -10.72638 -10.57849 -10.24173 -9.75615 -9.70586 -9.49443 -8.19054 -6.28477 0.45230 0.59014 0.68986 1.38410 1.42201 1.53088 2.16645 2.40966 2.78447 2.90295 3.04648 3.16150 3.47142 3.61382 3.62825 3.89082 3.89485 4.00604 4.06241 4.20313 4.23467 4.34727 4.42589 4.43541 4.46257 4.60476 4.66891 4.68788 4.75746 4.77323 4.80882 4.97654 5.01168 5.08751 5.14663 5.22241 5.26895 5.43855 5.60532 5.63432 5.64523 5.66712 5.80294 5.88970 6.07390 6.18009 6.18591 6.23172 6.84290 7.05444 7.40366 7.62902 8.91706 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007886 B = 0.003630 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3549.816765 B = 7711.106206 C =10683.358757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.052 0.948 9 C 0.039 3.961 10 C 0.222 3.778 11 H 0.057 0.943 12 N -0.699 5.699 13 C 0.719 3.281 14 O -0.627 6.627 15 N -0.602 5.602 16 O -0.148 6.148 17 C 0.054 3.946 18 C -0.179 4.179 19 C 0.066 3.934 20 O -0.402 6.402 21 C 0.068 3.932 22 C -0.145 4.145 23 C -0.099 4.099 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.125 4.125 28 C -0.133 4.133 29 H 0.264 0.736 30 H 0.018 0.982 31 H 0.008 0.992 32 H 0.409 0.591 33 H 0.419 0.581 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.124 0.876 44 H 0.147 0.853 45 H 0.151 0.849 46 H 0.143 0.857 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.777 -12.872 13.545 20.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.070 0.930 9 C 0.001 3.999 10 C 0.117 3.883 11 H 0.075 0.925 12 N -0.356 5.356 13 C 0.420 3.580 14 O -0.507 6.507 15 N -0.309 5.309 16 O -0.152 6.152 17 C -0.004 4.004 18 C -0.218 4.218 19 C -0.010 4.010 20 O -0.321 6.321 21 C -0.009 4.009 22 C -0.184 4.184 23 C -0.101 4.101 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.148 4.148 27 C -0.143 4.143 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.026 0.974 32 H 0.245 0.755 33 H 0.262 0.738 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.092 0.908 40 H 0.136 0.864 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.142 0.858 44 H 0.165 0.835 45 H 0.168 0.832 46 H 0.160 0.840 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.387 -13.272 12.517 20.516 hybrid contribution -0.198 1.681 0.273 1.714 sum 9.189 -11.591 12.789 19.554 Atomic orbital electron populations 1.70070 1.07345 1.27625 1.51384 1.25730 0.95534 1.02462 0.94854 0.85560 0.78810 0.79788 0.77808 1.19636 1.20913 1.19962 1.21427 0.92970 0.91599 1.50582 0.92964 1.19148 0.93153 0.90765 0.96814 1.19650 0.91555 0.92104 0.84998 0.92497 1.44713 1.15086 1.61280 1.14520 1.15524 0.80875 0.79391 0.82232 1.90867 1.71101 1.53181 1.35590 1.45907 1.09118 1.63625 1.12225 1.90616 1.15862 1.76422 1.32287 1.22943 0.95263 0.96653 0.85526 1.22778 1.00963 0.97839 1.00188 1.22656 0.93180 0.90496 0.94713 1.87938 1.35206 1.14994 1.93940 1.22727 0.98251 0.85610 0.94272 1.22290 0.97626 0.98049 1.00454 1.20472 0.98393 0.96410 0.94791 1.21072 0.97922 0.96623 0.98094 1.21446 0.98918 0.95095 0.98863 1.21471 0.99939 1.00895 0.92456 1.21381 0.97611 0.95139 1.00180 1.21185 1.00345 0.96632 0.97050 0.92723 0.96398 0.97369 0.75539 0.73762 0.88077 0.91998 0.89980 0.90802 0.87500 0.90756 0.86401 0.88782 0.91403 0.85807 0.83519 0.83169 0.83961 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.98 13.29 21.45 0.28 -52.70 16 2 C 0.01 0.71 5.46 84.66 0.46 1.17 16 3 Si 0.95 43.00 29.54 68.60 2.03 45.02 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.53 -28.25 8.84 25.60 0.23 -28.02 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 9 C 0.04 1.90 4.50 29.85 0.13 2.04 16 10 C 0.22 9.49 2.12 44.24 0.09 9.58 16 11 H 0.06 2.76 7.44 -2.38 -0.02 2.75 16 12 N -0.70 -25.71 4.02 -461.40 -1.86 -27.57 16 13 C 0.72 27.80 8.67 179.06 1.55 29.35 16 14 O -0.63 -30.52 16.41 13.33 0.22 -30.31 16 15 N -0.60 -17.64 6.38 -184.74 -1.18 -18.81 16 16 O -0.15 -4.44 10.76 -21.43 -0.23 -4.67 16 17 C 0.05 1.04 2.83 30.71 0.09 1.13 16 18 C -0.18 -3.31 5.79 30.69 0.18 -3.14 16 19 C 0.07 0.94 6.84 72.01 0.49 1.43 16 20 O -0.40 -6.94 10.77 -148.98 -1.60 -8.55 16 21 C 0.07 0.84 6.84 72.01 0.49 1.33 16 22 C -0.15 -2.39 5.79 30.68 0.18 -2.21 16 23 C -0.10 -3.81 4.91 -19.87 -0.10 -3.91 16 24 C -0.12 -3.91 9.33 22.27 0.21 -3.70 16 25 C -0.13 -3.41 10.05 22.27 0.22 -3.18 16 26 C -0.13 -3.35 10.05 22.27 0.22 -3.12 16 27 C -0.13 -3.67 10.05 22.27 0.22 -3.44 16 28 C -0.13 -4.85 9.67 22.27 0.22 -4.64 16 29 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 30 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.41 12.91 8.62 -92.71 -0.80 12.11 16 33 H 0.42 8.68 8.44 -92.71 -0.78 7.90 16 34 H 0.10 1.43 7.94 -2.39 -0.02 1.41 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 0.63 8.14 -2.38 -0.02 0.62 16 40 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.12 3.71 7.71 -2.91 -0.02 3.69 16 44 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 45 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 46 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 47 H 0.11 4.09 8.04 -2.91 -0.02 4.06 16 Total: -1.00 -75.63 394.04 1.95 -73.67 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -0.60 Total: 33.25 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 4.89 Total: -9.34 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -2.75 Total: -99.08 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -1.62 Total: -43.52 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -75.63 1.95 -73.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773406601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.258 kcal (2) G-P(sol) polarization free energy of solvation -75.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds