Wall clock time and date at job start Wed Apr 1 2020 00:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86801 * 120.00263 * 2 1 4 4 H 1.48508 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46858 * 299.99237 * 3 2 1 6 6 H 1.48497 * 109.47256 * 59.99511 * 3 2 1 7 7 C 1.38657 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00439 * 180.02562 * 7 2 1 9 9 O 1.34835 * 119.99620 * 0.02562 * 7 2 1 10 10 C 1.35754 * 116.99780 * 185.05203 * 9 7 2 11 11 C 1.38878 * 120.06920 * 354.47096 * 10 9 7 12 12 C 1.38095 * 119.92680 * 180.02562 * 11 10 9 13 13 C 1.38298 * 120.07171 * 359.97194 * 12 11 10 14 14 C 1.50707 * 119.92974 * 180.02562 * 13 12 11 15 15 N 1.46498 * 109.46865 * 90.00449 * 14 13 12 16 16 C 1.34778 * 120.00137 * 179.97438 * 15 14 13 17 17 O 1.21593 * 119.99486 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00416 * 179.97438 * 16 15 14 19 19 C 1.47424 * 125.64419 * 4.94922 * 18 16 15 20 20 C 1.54920 * 104.92824 * 204.15277 * 19 18 16 21 21 C 1.55156 * 101.57925 * 322.94017 * 20 19 18 22 22 C 1.47288 * 125.79522 * 184.95311 * 18 16 15 23 23 H 1.08993 * 109.98517 * 59.42906 * 22 18 16 24 24 C 1.53001 * 109.87400 * 298.35549 * 22 18 16 25 25 C 1.52995 * 109.47415 * 176.71257 * 24 22 18 26 26 O 1.42892 * 109.47221 * 185.02205 * 25 24 22 27 27 C 1.38301 * 120.13914 * 0.30019 * 13 12 11 28 28 C 1.38100 * 120.06827 * 359.45362 * 27 13 12 29 29 H 0.97008 * 119.99773 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.03212 * 0.04136 * 11 10 9 31 31 H 1.08003 * 119.96168 * 180.02562 * 12 11 10 32 32 H 1.09000 * 109.47170 * 330.00237 * 14 13 12 33 33 H 1.09000 * 109.46735 * 210.00360 * 14 13 12 34 34 H 0.96998 * 120.00247 * 359.97438 * 15 14 13 35 35 H 1.09001 * 110.36651 * 85.26936 * 19 18 16 36 36 H 1.08993 * 110.37344 * 323.04950 * 19 18 16 37 37 H 1.09001 * 110.99778 * 81.01513 * 20 19 18 38 38 H 1.08999 * 111.00238 * 204.86434 * 20 19 18 39 39 H 1.09003 * 110.71845 * 153.86574 * 21 20 19 40 40 H 1.08994 * 110.71881 * 277.13278 * 21 20 19 41 41 H 1.08996 * 109.47132 * 296.71753 * 24 22 18 42 42 H 1.09006 * 109.46486 * 56.71453 * 24 22 18 43 43 H 1.09000 * 109.47260 * 305.02259 * 25 24 22 44 44 H 1.08999 * 109.47108 * 65.02021 * 25 24 22 45 45 H 0.96700 * 114.00144 * 180.02562 * 26 25 24 46 46 H 1.07999 * 119.96500 * 179.70117 * 27 13 12 47 47 H 1.07997 * 120.03526 * 180.27182 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8910 2.3963 -1.2126 6 1 1.8909 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0698 -3.5046 0.1076 11 6 3.4570 -3.4395 0.0952 12 6 4.2020 -4.5972 0.2037 13 6 3.5682 -5.8204 0.3253 14 6 4.3844 -7.0817 0.4442 15 7 4.6549 -7.3569 1.8574 16 6 5.3731 -8.4424 2.2072 17 8 5.7970 -9.1930 1.3496 18 7 5.6224 -8.6954 3.5072 19 6 5.0873 -7.9316 4.6490 20 6 6.0951 -8.1759 5.8000 21 6 6.4829 -9.6597 5.5646 22 6 6.4738 -9.7795 4.0261 23 1 7.4876 -9.6742 3.6400 24 6 5.8983 -11.1357 3.6133 25 6 6.8323 -12.2514 4.0861 26 8 6.3568 -13.5084 3.6006 27 6 2.1869 -5.8890 0.3323 28 6 1.4362 -4.7345 0.2292 29 1 -0.4850 0.8401 -0.0004 30 1 3.9525 -2.4846 0.0010 31 1 5.2809 -4.5472 0.1946 32 1 5.3271 -6.9560 -0.0884 33 1 3.8308 -7.9148 0.0112 34 1 4.3170 -6.7580 2.5415 35 1 4.1000 -8.3026 4.9243 36 1 5.0388 -6.8702 4.4062 37 1 6.9639 -7.5248 5.7033 38 1 5.6177 -8.0462 6.7713 39 1 7.4769 -9.8661 5.9616 40 1 5.7434 -10.3265 6.0078 41 1 4.9162 -11.2671 4.0675 42 1 5.8049 -11.1755 2.5280 43 1 7.8369 -12.0707 3.7037 44 1 6.8559 -12.2681 5.1757 45 1 6.9017 -14.2630 3.8630 46 1 1.6949 -6.8462 0.4226 47 1 0.3576 -4.7883 0.2392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779554459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:28 Heat of formation + Delta-G solvation = -83.580455 kcal Electronic energy + Delta-G solvation = -27903.493358 eV Core-core repulsion = 23858.841214 eV Total energy + Delta-G solvation = -4044.652144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.53056 -39.18366 -38.15563 -37.04008 -36.74656 -34.43594 -32.67214 -32.29093 -31.73296 -30.28072 -29.60269 -27.44970 -25.94908 -24.90723 -23.64643 -22.49432 -22.05400 -21.17599 -20.58061 -19.73007 -18.40279 -18.06640 -17.50001 -17.01163 -16.76631 -15.67758 -15.57133 -15.11778 -14.89398 -14.61609 -14.49969 -14.29925 -14.00848 -13.72395 -13.68926 -13.49672 -13.36772 -13.26157 -12.79357 -12.68465 -12.65500 -12.26313 -11.99534 -11.68041 -11.63140 -11.41177 -11.39042 -11.15123 -11.07258 -10.97546 -10.77403 -10.67993 -10.48679 -10.29913 -10.01467 -9.42952 -9.07425 -8.92576 -8.59952 -8.28639 -7.33541 -6.53938 -4.12752 2.00604 2.12866 2.65234 3.07126 3.08647 3.14256 3.21819 3.84727 3.89508 4.04422 4.19105 4.28126 4.52328 4.57165 4.77966 4.88514 4.94566 4.99087 5.01257 5.13506 5.15942 5.20810 5.24359 5.31880 5.39523 5.45026 5.50260 5.54233 5.67261 5.75579 5.82717 5.84931 5.95393 6.00161 6.12089 6.26027 6.35413 6.58800 6.63469 6.80370 6.93165 7.02182 7.15993 7.27845 7.31232 7.34763 7.71171 7.90956 8.00071 8.63358 8.91558 9.59935 10.63652 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.001983 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.242746 B =14118.089732 C =14698.585359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.214 4.214 14 C 0.198 3.802 15 N -0.736 5.736 16 C 0.720 3.280 17 O -0.590 6.590 18 N -0.636 5.636 19 C 0.098 3.902 20 C -0.131 4.131 21 C -0.131 4.131 22 C 0.162 3.838 23 H 0.074 0.926 24 C -0.135 4.135 25 C 0.081 3.919 26 O -0.574 6.574 27 C -0.053 4.053 28 C -0.195 4.195 29 H 0.271 0.729 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.378 0.622 46 H 0.113 0.887 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.350 -17.925 12.928 25.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.256 4.256 12 C -0.069 4.069 13 C -0.215 4.215 14 C 0.075 3.925 15 N -0.391 5.391 16 C 0.422 3.578 17 O -0.469 6.469 18 N -0.375 5.375 19 C -0.026 4.026 20 C -0.169 4.169 21 C -0.169 4.169 22 C 0.058 3.942 23 H 0.092 0.908 24 C -0.173 4.173 25 C 0.003 3.997 26 O -0.379 6.379 27 C -0.072 4.072 28 C -0.215 4.215 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.231 0.769 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.224 0.776 46 H 0.131 0.869 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.728 -17.823 11.873 24.913 hybrid contribution 0.702 0.905 0.598 1.292 sum 13.431 -16.919 12.471 24.943 Atomic orbital electron populations 1.70048 1.05998 1.27744 1.45555 1.25323 0.95867 0.98938 0.96385 0.85630 0.79150 0.80223 0.78333 1.19045 1.20057 1.20082 1.21405 0.91890 0.80715 1.52887 0.88869 1.83982 1.34515 1.11567 1.77578 1.19441 0.90316 0.88047 0.91602 1.21158 0.93772 0.98942 1.11777 1.20646 0.98387 0.91616 0.96246 1.19226 0.93564 0.93640 1.15070 1.19841 0.98285 0.94617 0.79772 1.45546 1.57511 1.26438 1.09600 1.15519 0.79441 0.81871 0.80977 1.90903 1.57842 1.49854 1.48276 1.47661 1.52783 1.33240 1.03839 1.22286 0.97416 0.96640 0.86220 1.22754 0.99451 0.96395 0.98340 1.22799 1.02807 0.97242 0.94075 1.21263 0.93993 0.85897 0.93038 0.90756 1.21926 0.98993 0.91878 1.04513 1.22105 0.96795 0.83903 0.96920 1.86513 1.56073 1.16626 1.78648 1.20543 0.92776 0.96834 0.97073 1.20220 0.99672 0.90240 1.11344 0.91935 0.85424 0.87406 0.91762 0.91703 0.76892 0.91371 0.90645 0.90402 0.89665 0.89914 0.90228 0.91338 0.89062 0.93641 0.93711 0.77565 0.86948 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.61 13.67 55.48 0.76 -23.85 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.98 29.55 -169.99 -5.02 14.95 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.66 9.49 30.89 0.29 -10.36 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 9 O -0.17 -4.81 9.76 0.02 0.00 -4.81 16 10 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 11 C -0.24 -4.91 9.17 -39.40 -0.36 -5.27 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 13 C -0.21 -3.47 5.25 -104.57 -0.55 -4.02 16 14 C 0.20 2.89 5.80 -5.19 -0.03 2.86 16 15 N -0.74 -9.91 5.51 -66.41 -0.37 -10.27 16 16 C 0.72 10.42 8.31 -86.92 -0.72 9.70 16 17 O -0.59 -10.63 15.18 5.28 0.08 -10.55 16 18 N -0.64 -7.04 3.07 -168.49 -0.52 -7.55 16 19 C 0.10 0.78 6.67 -2.52 -0.02 0.76 16 20 C -0.13 -0.75 7.09 -24.58 -0.17 -0.93 16 21 C -0.13 -0.76 5.61 -24.90 -0.14 -0.90 16 22 C 0.16 1.50 2.96 -66.81 -0.20 1.30 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 24 C -0.13 -1.40 5.04 -26.73 -0.13 -1.54 16 25 C 0.08 0.64 6.80 37.15 0.25 0.90 16 26 O -0.57 -5.30 13.66 -35.23 -0.48 -5.78 16 27 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 28 C -0.20 -3.94 9.99 -39.39 -0.39 -4.34 16 29 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 30 H 0.13 2.66 5.64 -52.49 -0.30 2.37 16 31 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 32 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.40 4.80 6.86 -40.82 -0.28 4.52 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.59 7.12 -51.93 -0.37 0.22 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.43 7.79 -51.93 -0.40 0.02 16 41 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 42 H 0.09 1.30 6.62 -51.93 -0.34 0.96 16 43 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.04 0.26 7.57 -51.93 -0.39 -0.14 16 45 H 0.38 1.57 9.12 45.56 0.42 1.98 16 46 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 47 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 386.90 15.07 5.83 5.83 Total: -1.00 -33.81 386.90 -9.16 -42.96 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.14 Total: 9.01 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -3.30 Total: -9.94 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: -0.12 Total: -41.68 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.40 Total: -21.14 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.81 -9.16 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779554459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.616 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds