Wall clock time and date at job start Wed Apr 1 2020 00:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86801 * 120.00263 * 2 1 4 4 H 1.48508 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46858 * 299.99237 * 3 2 1 6 6 H 1.48497 * 109.47256 * 59.99511 * 3 2 1 7 7 C 1.38657 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00439 * 180.02562 * 7 2 1 9 9 O 1.34835 * 119.99620 * 0.02562 * 7 2 1 10 10 C 1.35754 * 116.99780 * 185.05203 * 9 7 2 11 11 C 1.38878 * 120.06920 * 354.47096 * 10 9 7 12 12 C 1.38095 * 119.92680 * 180.02562 * 11 10 9 13 13 C 1.38298 * 120.07171 * 359.97194 * 12 11 10 14 14 C 1.50707 * 119.92974 * 180.02562 * 13 12 11 15 15 N 1.46498 * 109.46865 * 90.00449 * 14 13 12 16 16 C 1.34778 * 120.00137 * 179.97438 * 15 14 13 17 17 O 1.21593 * 119.99486 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00416 * 179.97438 * 16 15 14 19 19 C 1.47424 * 125.64419 * 4.94922 * 18 16 15 20 20 C 1.54920 * 104.92824 * 204.15277 * 19 18 16 21 21 C 1.55156 * 101.57925 * 322.94017 * 20 19 18 22 22 C 1.47288 * 125.79522 * 184.95311 * 18 16 15 23 23 H 1.08993 * 109.98517 * 59.42906 * 22 18 16 24 24 C 1.53001 * 109.87400 * 298.35549 * 22 18 16 25 25 C 1.52995 * 109.47415 * 176.71257 * 24 22 18 26 26 O 1.42892 * 109.47221 * 185.02205 * 25 24 22 27 27 C 1.38301 * 120.13914 * 0.30019 * 13 12 11 28 28 C 1.38100 * 120.06827 * 359.45362 * 27 13 12 29 29 H 0.97008 * 119.99773 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.03212 * 0.04136 * 11 10 9 31 31 H 1.08003 * 119.96168 * 180.02562 * 12 11 10 32 32 H 1.09000 * 109.47170 * 330.00237 * 14 13 12 33 33 H 1.09000 * 109.46735 * 210.00360 * 14 13 12 34 34 H 0.96998 * 120.00247 * 359.97438 * 15 14 13 35 35 H 1.09001 * 110.36651 * 85.26936 * 19 18 16 36 36 H 1.08993 * 110.37344 * 323.04950 * 19 18 16 37 37 H 1.09001 * 110.99778 * 81.01513 * 20 19 18 38 38 H 1.08999 * 111.00238 * 204.86434 * 20 19 18 39 39 H 1.09003 * 110.71845 * 153.86574 * 21 20 19 40 40 H 1.08994 * 110.71881 * 277.13278 * 21 20 19 41 41 H 1.08996 * 109.47132 * 296.71753 * 24 22 18 42 42 H 1.09006 * 109.46486 * 56.71453 * 24 22 18 43 43 H 1.09000 * 109.47260 * 305.02259 * 25 24 22 44 44 H 1.08999 * 109.47108 * 65.02021 * 25 24 22 45 45 H 0.96700 * 114.00144 * 180.02562 * 26 25 24 46 46 H 1.07999 * 119.96500 * 179.70117 * 27 13 12 47 47 H 1.07997 * 120.03526 * 180.27182 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8910 2.3963 -1.2126 6 1 1.8909 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0698 -3.5046 0.1076 11 6 3.4570 -3.4395 0.0952 12 6 4.2020 -4.5972 0.2037 13 6 3.5682 -5.8204 0.3253 14 6 4.3844 -7.0817 0.4442 15 7 4.6549 -7.3569 1.8574 16 6 5.3731 -8.4424 2.2072 17 8 5.7970 -9.1930 1.3496 18 7 5.6224 -8.6954 3.5072 19 6 5.0873 -7.9316 4.6490 20 6 6.0951 -8.1759 5.8000 21 6 6.4829 -9.6597 5.5646 22 6 6.4738 -9.7795 4.0261 23 1 7.4876 -9.6742 3.6400 24 6 5.8983 -11.1357 3.6133 25 6 6.8323 -12.2514 4.0861 26 8 6.3568 -13.5084 3.6006 27 6 2.1869 -5.8890 0.3323 28 6 1.4362 -4.7345 0.2292 29 1 -0.4850 0.8401 -0.0004 30 1 3.9525 -2.4846 0.0010 31 1 5.2809 -4.5472 0.1946 32 1 5.3271 -6.9560 -0.0884 33 1 3.8308 -7.9148 0.0112 34 1 4.3170 -6.7580 2.5415 35 1 4.1000 -8.3026 4.9243 36 1 5.0388 -6.8702 4.4062 37 1 6.9639 -7.5248 5.7033 38 1 5.6177 -8.0462 6.7713 39 1 7.4769 -9.8661 5.9616 40 1 5.7434 -10.3265 6.0078 41 1 4.9162 -11.2671 4.0675 42 1 5.8049 -11.1755 2.5280 43 1 7.8369 -12.0707 3.7037 44 1 6.8559 -12.2681 5.1757 45 1 6.9017 -14.2630 3.8630 46 1 1.6949 -6.8462 0.4226 47 1 0.3576 -4.7883 0.2392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779554459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:25 Heat of formation + Delta-G solvation = -108.215077 kcal Electronic energy + Delta-G solvation = -27904.561595 eV Core-core repulsion = 23858.841214 eV Total energy + Delta-G solvation = -4045.720381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.84 seconds Orbital eigenvalues (eV) -41.49554 -40.80647 -39.16989 -38.37314 -37.65423 -35.71134 -34.31195 -33.39432 -32.50158 -31.84904 -30.99073 -28.09748 -27.66847 -26.35630 -24.52056 -23.65904 -23.18434 -22.26401 -21.71332 -20.71768 -19.88707 -19.31838 -18.79576 -18.15507 -17.63149 -16.77303 -16.54516 -16.35325 -16.27415 -15.98043 -15.80230 -15.53906 -15.36571 -14.99005 -14.86156 -14.45472 -14.34828 -14.32390 -14.12242 -13.85149 -13.66532 -13.40134 -13.27859 -13.04668 -12.85586 -12.57551 -12.36731 -12.24853 -12.11603 -12.09469 -12.08148 -11.75957 -11.62869 -11.25455 -11.21027 -10.85165 -10.81123 -10.22398 -9.83066 -9.51281 -9.03527 -8.48880 -6.17084 0.50394 0.56183 1.35889 1.42548 1.53786 1.66618 2.11474 2.16613 2.74971 3.02033 3.21149 3.41053 3.46945 3.62099 3.66209 3.85995 4.00796 4.02539 4.15897 4.16960 4.25006 4.33746 4.42656 4.44284 4.54398 4.55284 4.58477 4.70178 4.74520 4.79227 4.92196 4.96410 5.02398 5.08495 5.13660 5.14498 5.17741 5.25027 5.36600 5.43853 5.47147 5.52317 5.67572 5.74124 6.00849 6.04953 6.14110 6.92057 6.95927 6.97029 7.54336 7.74894 8.74061 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.001983 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.242746 B =14118.089732 C =14698.585359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.228 6.228 10 C 0.124 3.876 11 C -0.242 4.242 12 C -0.044 4.044 13 C -0.182 4.182 14 C 0.204 3.796 15 N -0.730 5.730 16 C 0.714 3.286 17 O -0.631 6.631 18 N -0.636 5.636 19 C 0.088 3.912 20 C -0.123 4.123 21 C -0.120 4.120 22 C 0.156 3.844 23 H 0.067 0.933 24 C -0.130 4.130 25 C 0.083 3.917 26 O -0.601 6.601 27 C -0.043 4.043 28 C -0.203 4.203 29 H 0.273 0.727 30 H 0.122 0.878 31 H 0.138 0.862 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.405 0.595 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.045 0.955 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.398 0.602 46 H 0.145 0.855 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.964 -19.351 15.150 29.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.134 6.134 10 C 0.073 3.927 11 C -0.261 4.261 12 C -0.063 4.063 13 C -0.183 4.183 14 C 0.081 3.919 15 N -0.386 5.386 16 C 0.416 3.584 17 O -0.513 6.513 18 N -0.373 5.373 19 C -0.034 4.034 20 C -0.161 4.161 21 C -0.158 4.158 22 C 0.052 3.948 23 H 0.085 0.915 24 C -0.169 4.169 25 C 0.005 3.995 26 O -0.410 6.410 27 C -0.062 4.062 28 C -0.223 4.223 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.156 0.844 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.241 0.759 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.248 0.752 46 H 0.162 0.838 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.382 -19.309 14.149 28.454 hybrid contribution 0.013 0.934 -0.055 0.935 sum 15.395 -18.375 14.094 27.809 Atomic orbital electron populations 1.70188 1.08024 1.28802 1.48604 1.26589 0.96838 1.02761 0.95805 0.84530 0.78308 0.74864 0.78525 1.17378 1.19507 1.19327 1.21876 0.92587 0.81294 1.53130 0.87857 1.83953 1.36059 1.12668 1.80762 1.19975 0.91597 0.87932 0.93187 1.21234 0.92993 1.00001 1.11914 1.20920 0.99776 0.90680 0.94888 1.19463 0.93448 0.94034 1.11347 1.19712 0.98065 0.93422 0.80719 1.45298 1.57560 1.26553 1.09181 1.15671 0.79301 0.81553 0.81871 1.90880 1.59414 1.51094 1.49901 1.47766 1.52360 1.33822 1.03393 1.22555 0.98460 0.96397 0.85971 1.22768 0.98925 0.96193 0.98225 1.22805 1.04586 0.97550 0.90873 1.21473 0.93037 0.84658 0.95582 0.91500 1.21844 0.99634 0.93928 1.01452 1.22129 0.96067 0.82683 0.98594 1.86455 1.57346 1.17875 1.79345 1.20857 0.93039 0.96975 0.95284 1.20436 1.00082 0.90341 1.11406 0.91795 0.86068 0.84410 0.91478 0.91471 0.75926 0.90755 0.90418 0.90172 0.87431 0.87526 0.89283 0.92017 0.93632 0.93008 0.90587 0.75164 0.83764 0.86598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.32 13.67 21.61 0.30 -55.02 16 2 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 3 Si 1.02 41.81 29.55 68.60 2.03 43.84 16 4 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 6 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.41 -23.37 9.49 67.92 0.64 -22.72 16 8 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 9 O -0.23 -13.35 9.76 -22.83 -0.22 -13.58 16 10 C 0.12 5.93 6.65 22.58 0.15 6.08 16 11 C -0.24 -10.01 9.17 22.39 0.21 -9.80 16 12 C -0.04 -1.44 9.69 22.25 0.22 -1.22 16 13 C -0.18 -5.44 5.25 -19.83 -0.10 -5.55 16 14 C 0.20 5.46 5.80 85.64 0.50 5.95 16 15 N -0.73 -18.08 5.51 -482.28 -2.66 -20.74 16 16 C 0.71 19.82 8.31 179.06 1.49 21.31 16 17 O -0.63 -22.60 15.18 -4.01 -0.06 -22.66 16 18 N -0.64 -13.00 3.07 -805.24 -2.47 -15.48 16 19 C 0.09 1.17 6.67 86.86 0.58 1.75 16 20 C -0.12 -0.95 7.09 31.99 0.23 -0.72 16 21 C -0.12 -0.95 5.61 31.78 0.18 -0.77 16 22 C 0.16 2.60 2.96 45.29 0.13 2.74 16 23 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 24 C -0.13 -2.61 5.04 30.59 0.15 -2.45 16 25 C 0.08 1.16 6.80 71.98 0.49 1.65 16 26 O -0.60 -10.36 13.66 -148.98 -2.03 -12.39 16 27 C -0.04 -1.38 9.69 22.25 0.22 -1.16 16 28 C -0.20 -8.25 9.99 22.39 0.22 -8.02 16 29 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 30 H 0.12 5.11 5.64 -2.91 -0.02 5.10 16 31 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 32 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16 33 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16 34 H 0.40 8.75 6.86 -92.71 -0.64 8.12 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.00 7.12 -2.39 -0.02 0.98 16 37 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.09 0.59 7.79 -2.39 -0.02 0.57 16 41 H 0.06 1.27 8.06 -2.39 -0.02 1.25 16 42 H 0.04 1.34 6.62 -2.38 -0.02 1.32 16 43 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.08 0.60 7.57 -2.39 -0.02 0.58 16 45 H 0.40 2.63 9.12 -74.06 -0.68 1.95 16 46 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 47 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -79.42 386.90 0.33 -79.09 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.31 Total: 30.64 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 5.76 Total: -13.71 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -4.84 Total: -91.23 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -2.32 Total: -48.63 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -79.42 0.33 -79.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779554459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.129 kcal (2) G-P(sol) polarization free energy of solvation -79.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.84 seconds