Wall clock time and date at job start Wed Apr 1 2020 00:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86800 * 119.99915 * 2 1 4 4 H 1.48503 * 109.47117 * 270.00089 * 3 2 1 5 5 H 1.48494 * 109.47311 * 30.00359 * 3 2 1 6 6 H 1.48503 * 109.46929 * 150.00410 * 3 2 1 7 7 C 1.38651 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00205 * 179.97438 * 7 2 1 9 9 O 1.34825 * 120.00325 * 0.02562 * 7 2 1 10 10 C 1.35747 * 117.00748 * 185.05208 * 9 7 2 11 11 C 1.38880 * 120.07424 * 174.73343 * 10 9 7 12 12 C 1.38098 * 119.93116 * 180.25489 * 11 10 9 13 13 C 1.38308 * 120.06988 * 359.46922 * 12 11 10 14 14 C 1.50697 * 119.93211 * 180.29525 * 13 12 11 15 15 N 1.46503 * 109.46715 * 90.00936 * 14 13 12 16 16 C 1.34777 * 119.99952 * 180.02562 * 15 14 13 17 17 O 1.21584 * 119.99612 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00208 * 179.97438 * 16 15 14 19 19 C 1.47428 * 125.64480 * 354.77756 * 18 16 15 20 20 C 1.55128 * 104.71773 * 155.81761 * 19 18 16 21 21 C 1.55154 * 101.49068 * 37.29478 * 20 19 18 22 22 C 1.47021 * 125.64884 * 175.08349 * 18 16 15 23 23 H 1.09001 * 109.88167 * 300.44082 * 22 18 16 24 24 C 1.52995 * 109.88107 * 61.45183 * 22 18 16 25 25 C 1.53006 * 109.46619 * 185.42496 * 24 22 18 26 26 O 1.42907 * 109.46874 * 184.94719 * 25 24 22 27 27 C 1.38303 * 120.13468 * 0.28346 * 13 12 11 28 28 C 1.38104 * 120.07228 * 359.97140 * 27 13 12 29 29 H 0.96996 * 119.99990 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.03514 * 0.02562 * 11 10 9 31 31 H 1.07996 * 119.96540 * 179.75402 * 12 11 10 32 32 H 1.08995 * 109.46962 * 210.00369 * 14 13 12 33 33 H 1.08991 * 109.47414 * 330.00646 * 14 13 12 34 34 H 0.97000 * 120.00131 * 359.97438 * 15 14 13 35 35 H 1.09005 * 110.36663 * 274.74273 * 19 18 16 36 36 H 1.08992 * 110.36852 * 37.06756 * 19 18 16 37 37 H 1.09005 * 111.19063 * 279.18134 * 20 19 18 38 38 H 1.09006 * 110.90189 * 155.27558 * 20 19 18 39 39 H 1.08996 * 110.71947 * 205.97353 * 21 20 19 40 40 H 1.08992 * 110.72131 * 82.69450 * 21 20 19 41 41 H 1.09002 * 109.47365 * 305.42443 * 24 22 18 42 42 H 1.09000 * 109.47147 * 65.43076 * 24 22 18 43 43 H 1.09000 * 109.47132 * 304.94832 * 25 24 22 44 44 H 1.09002 * 109.47009 * 64.95406 * 25 24 22 45 45 H 0.96694 * 114.00277 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.96264 * 179.97438 * 27 13 12 47 47 H 1.08000 * 120.03619 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3348 -2.3684 -0.0016 10 6 2.0699 -3.5047 0.1044 11 6 1.4364 -4.7352 0.2200 12 6 2.1872 -5.8887 0.3330 13 6 3.5686 -5.8206 0.3201 14 6 4.3847 -7.0820 0.4369 15 7 4.6430 -7.6220 -0.9002 16 6 5.3591 -8.7549 -1.0427 17 8 5.7912 -9.3284 -0.0616 18 7 5.5963 -9.2520 -2.2728 19 6 5.0451 -8.7236 -3.5340 20 6 6.0471 -9.1834 -4.6253 21 6 6.4380 -10.5942 -4.1114 22 6 6.4426 -10.4147 -2.5786 23 1 7.4594 -10.2352 -2.2294 24 6 5.8737 -11.6642 -1.9034 25 6 6.8315 -12.8386 -2.1144 26 8 6.2477 -14.0305 -1.5845 27 6 4.2023 -4.5972 0.2000 28 6 3.4571 -3.4395 0.0919 29 1 -0.4850 0.8400 0.0004 30 1 0.3578 -4.7895 0.2252 31 1 1.6952 -6.8455 0.4269 32 1 5.3319 -6.8577 0.9273 33 1 3.8358 -7.8168 1.0257 34 1 4.2980 -7.1647 -1.6830 35 1 4.0570 -9.1440 -3.7216 36 1 4.9950 -7.6354 -3.4997 37 1 6.9164 -8.5268 -4.6639 38 1 5.5612 -9.2431 -5.5992 39 1 7.4286 -10.8744 -4.4697 40 1 5.6951 -11.3333 -4.4109 41 1 5.7560 -11.4786 -0.8358 42 1 4.9039 -11.9034 -2.3398 43 1 7.0181 -12.9682 -3.1804 44 1 7.7725 -12.6364 -1.6027 45 1 6.8008 -14.8173 -1.6840 46 1 5.2811 -4.5472 0.1907 47 1 3.9526 -2.4845 -0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779554461.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:54 Heat of formation + Delta-G solvation = -83.464652 kcal Electronic energy + Delta-G solvation = -27887.995653 eV Core-core repulsion = 23843.348531 eV Total energy + Delta-G solvation = -4044.647122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -40.54937 -39.18436 -38.15596 -37.04027 -36.74787 -34.44285 -32.66349 -32.28719 -31.73854 -30.28030 -29.60357 -27.46038 -25.94913 -24.90454 -23.63912 -22.49115 -22.05396 -21.19847 -20.58383 -19.73339 -18.41780 -18.06672 -17.45766 -17.00915 -16.76904 -15.66022 -15.61749 -15.11748 -14.92474 -14.61826 -14.50222 -14.29640 -14.01504 -13.72350 -13.62101 -13.51118 -13.38846 -13.27339 -12.78926 -12.67841 -12.65282 -12.27587 -11.99515 -11.68028 -11.62984 -11.40106 -11.37915 -11.14984 -11.10288 -10.96662 -10.76778 -10.69939 -10.49475 -10.29654 -10.01014 -9.43171 -9.07819 -8.91994 -8.60171 -8.28623 -7.33465 -6.53583 -4.12482 2.00614 2.12858 2.65547 3.07621 3.09128 3.13843 3.21154 3.84708 3.89783 4.03590 4.18761 4.28055 4.52538 4.57994 4.79665 4.88424 4.92091 4.98794 5.00940 5.14779 5.16232 5.21281 5.24665 5.32458 5.39639 5.44946 5.50032 5.53614 5.67136 5.75719 5.82629 5.84894 5.95411 6.00624 6.12028 6.26437 6.35359 6.58607 6.63169 6.80374 6.92980 7.01806 7.15844 7.27796 7.30698 7.34762 7.71166 7.91139 7.99434 8.62749 8.91769 9.60004 10.63934 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.001943 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.049560 B =14404.834580 C =14859.535962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.161 3.839 11 C -0.195 4.195 12 C -0.053 4.053 13 C -0.214 4.214 14 C 0.198 3.802 15 N -0.736 5.736 16 C 0.720 3.280 17 O -0.591 6.591 18 N -0.636 5.636 19 C 0.098 3.902 20 C -0.131 4.131 21 C -0.131 4.131 22 C 0.162 3.838 23 H 0.074 0.926 24 C -0.135 4.135 25 C 0.081 3.919 26 O -0.574 6.574 27 C -0.050 4.050 28 C -0.237 4.237 29 H 0.271 0.729 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.378 0.622 46 H 0.108 0.892 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.330 -20.045 -9.759 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.215 4.215 12 C -0.072 4.072 13 C -0.215 4.215 14 C 0.075 3.925 15 N -0.391 5.391 16 C 0.422 3.578 17 O -0.469 6.469 18 N -0.375 5.375 19 C -0.025 4.025 20 C -0.169 4.169 21 C -0.169 4.169 22 C 0.058 3.942 23 H 0.092 0.908 24 C -0.173 4.173 25 C 0.002 3.998 26 O -0.379 6.379 27 C -0.069 4.069 28 C -0.257 4.257 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.231 0.769 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.224 0.776 46 H 0.126 0.874 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.692 -19.749 -8.781 25.064 hybrid contribution 0.734 0.793 -0.563 1.219 sum 13.426 -18.956 -9.344 25.038 Atomic orbital electron populations 1.70034 1.06000 1.27864 1.45451 1.25318 0.95866 0.98934 0.96364 0.85695 0.78963 0.79932 0.78762 1.19823 1.20174 1.19125 1.21352 0.91863 0.80723 1.53000 0.88928 1.83975 1.34513 1.11550 1.77569 1.19440 0.90317 0.88041 0.91609 1.20213 0.99667 0.90264 1.11336 1.20542 0.92775 0.96837 0.97064 1.19225 0.93564 0.93502 1.15235 1.19834 0.98364 0.92243 0.82075 1.45549 1.57494 1.25684 1.10359 1.15524 0.79467 0.80952 0.81883 1.90898 1.57504 1.61753 1.36742 1.47607 1.52641 1.32379 1.04865 1.22337 0.97278 0.99358 0.83561 1.22791 0.99462 0.96477 0.98208 1.22794 1.02805 0.97773 0.93526 1.21204 0.94105 0.84618 0.94291 0.90802 1.21940 0.99041 0.92239 1.04113 1.22116 0.95730 0.85133 0.96784 1.86506 1.48694 1.18666 1.84034 1.20649 0.98382 0.91661 0.96190 1.21159 0.93770 0.98938 1.11806 0.91881 0.86378 0.86952 0.91760 0.91702 0.76901 0.91327 0.90632 0.90375 0.89695 0.89939 0.90213 0.89138 0.91246 0.93697 0.93605 0.77559 0.87409 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.62 13.67 55.48 0.76 -23.87 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.99 29.55 -169.99 -5.02 14.97 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.39 -10.67 9.49 30.88 0.29 -10.38 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 9 O -0.17 -4.80 9.76 0.07 0.00 -4.80 16 10 C 0.16 3.72 6.65 -39.10 -0.26 3.46 16 11 C -0.20 -3.94 9.99 -39.40 -0.39 -4.34 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 13 C -0.21 -3.47 5.25 -104.57 -0.55 -4.02 16 14 C 0.20 2.89 5.80 -5.19 -0.03 2.86 16 15 N -0.74 -9.85 5.51 -66.42 -0.37 -10.21 16 16 C 0.72 10.35 8.30 -86.92 -0.72 9.63 16 17 O -0.59 -10.56 15.12 5.29 0.08 -10.48 16 18 N -0.64 -6.99 3.06 -168.55 -0.52 -7.51 16 19 C 0.10 0.78 6.69 -2.41 -0.02 0.76 16 20 C -0.13 -0.75 7.10 -24.47 -0.17 -0.92 16 21 C -0.13 -0.77 5.56 -24.90 -0.14 -0.90 16 22 C 0.16 1.49 2.91 -66.95 -0.20 1.30 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 24 C -0.13 -1.40 5.06 -26.73 -0.14 -1.54 16 25 C 0.08 0.65 6.97 37.16 0.26 0.90 16 26 O -0.57 -5.25 13.66 -35.23 -0.48 -5.73 16 27 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 28 C -0.24 -4.91 9.17 -39.39 -0.36 -5.27 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.40 4.76 6.86 -40.82 -0.28 4.48 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.58 7.11 -51.93 -0.37 0.21 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.44 7.77 -51.93 -0.40 0.04 16 41 H 0.09 1.28 6.53 -51.93 -0.34 0.94 16 42 H 0.07 0.75 8.02 -51.93 -0.42 0.33 16 43 H 0.04 0.26 7.36 -51.93 -0.38 -0.12 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.38 1.55 9.12 45.56 0.42 1.96 16 46 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 47 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 LS Contribution 386.58 15.07 5.83 5.83 Total: -1.00 -33.70 386.58 -9.13 -42.83 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.12 Total: 8.98 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -3.29 Total: -10.02 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: -0.12 Total: -41.58 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.40 Total: -21.00 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.70 -9.13 -42.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779554461.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.631 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds