Wall clock time and date at job start Tue Mar 31 2020 17:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47150 * 2 1 4 4 C 1.52999 * 109.47388 * 119.99750 * 2 1 3 5 5 C 1.52999 * 109.47098 * 65.00706 * 4 2 1 6 6 N 1.46500 * 109.47396 * 184.81504 * 5 4 2 7 7 C 1.46498 * 119.99837 * 265.07932 * 6 5 4 8 8 C 1.50699 * 109.47428 * 284.59448 * 7 6 5 9 9 H 1.08000 * 120.00122 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00149 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99735 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 119.99893 * 0.02562 * 10 8 7 13 13 H 1.48491 * 109.47429 * 89.99524 * 12 10 8 14 14 H 1.48503 * 109.47040 * 209.99615 * 12 10 8 15 15 H 1.48501 * 109.47001 * 329.99147 * 12 10 8 16 16 C 1.34777 * 120.00184 * 85.07952 * 6 5 4 17 17 O 1.21588 * 119.99888 * 6.59421 * 16 6 5 18 18 C 1.47593 * 120.00319 * 186.59173 * 16 6 5 19 19 C 1.38967 * 119.88383 * 325.50667 * 18 16 6 20 20 C 1.39700 * 119.59276 * 179.97438 * 19 18 16 21 21 N 1.35465 * 133.01450 * 179.97438 * 20 19 18 22 22 N 1.28636 * 110.13983 * 180.02562 * 21 20 19 23 23 N 1.40223 * 109.53253 * 359.97438 * 22 21 20 24 24 H 0.97002 * 126.65792 * 180.02562 * 23 22 21 25 25 C 1.37307 * 106.68827 * 359.97438 * 23 22 21 26 26 C 1.39175 * 133.68629 * 179.97438 * 25 23 22 27 27 C 1.36581 * 120.13084 * 180.27991 * 26 25 23 28 28 F 1.35101 * 119.80700 * 179.70801 * 27 26 25 29 29 H 1.08992 * 109.47399 * 64.81617 * 1 2 3 30 30 H 1.09001 * 109.47216 * 184.81837 * 1 2 3 31 31 H 1.09004 * 109.46834 * 304.81191 * 1 2 3 32 32 H 1.08994 * 109.47260 * 240.00053 * 2 1 3 33 33 H 1.08998 * 109.47560 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47116 * 300.00459 * 3 2 1 35 35 H 1.09008 * 109.47055 * 59.99994 * 3 2 1 36 36 H 1.09004 * 109.47445 * 305.01241 * 4 2 1 37 37 H 1.09001 * 109.47390 * 185.00429 * 4 2 1 38 38 H 1.08996 * 109.47245 * 64.81011 * 5 4 2 39 39 H 1.09001 * 109.47062 * 304.81603 * 5 4 2 40 40 H 1.09003 * 109.47027 * 44.59773 * 7 6 5 41 41 H 1.09006 * 109.46984 * 164.59850 * 7 6 5 42 42 H 0.97003 * 119.99228 * 180.02562 * 11 10 8 43 43 H 1.08003 * 120.20751 * 359.97438 * 19 18 16 44 44 H 1.08002 * 119.93157 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6355 -2.1954 1.1880 6 7 2.0226 -2.8604 2.4347 7 6 3.2992 -3.5741 2.5183 8 6 3.1908 -4.8853 1.7834 9 1 2.2638 -5.1594 1.3019 10 6 4.2754 -5.7346 1.7250 11 7 4.1809 -6.8786 1.0833 12 14 5.8790 -5.2601 2.5573 13 1 5.8777 -5.7597 3.9557 14 1 7.0175 -5.8619 1.8178 15 1 6.0168 -3.7815 2.5600 16 6 1.2043 -2.8155 3.5046 17 8 0.0950 -2.3283 3.4016 18 6 1.6546 -3.3577 4.8014 19 6 2.4841 -4.4721 4.8355 20 6 2.9071 -4.9799 6.0662 21 7 3.6963 -6.0250 6.4127 22 7 3.7976 -6.0981 7.6930 23 7 3.0532 -5.0660 8.2819 24 1 2.9576 -4.8896 9.2310 25 6 2.4867 -4.3526 7.2545 26 6 1.6565 -3.2369 7.2022 27 6 1.2420 -2.7465 5.9967 28 9 0.4313 -1.6666 5.9538 29 1 -0.3634 0.4373 -0.9299 30 1 -0.3634 -1.0240 0.0863 31 1 -0.3633 0.5867 0.8438 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9564 0.8901 36 1 1.6053 -0.2618 2.1370 37 1 3.1264 -0.6442 1.2952 38 1 2.1384 -2.6757 0.3487 39 1 0.5561 -2.2708 1.0560 40 1 4.0845 -2.9681 2.0664 41 1 3.5422 -3.7627 3.5641 42 1 4.9439 -7.4762 1.0425 43 1 2.8000 -4.9427 3.9161 44 1 1.3360 -2.7603 8.1169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781943731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:39 Heat of formation + Delta-G solvation = 41.037601 kcal Electronic energy + Delta-G solvation = -29549.734190 eV Core-core repulsion = 25419.318337 eV Total energy + Delta-G solvation = -4130.415853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 12.13 seconds Orbital eigenvalues (eV) -48.91908 -42.08557 -39.68989 -37.11763 -36.40861 -35.14223 -33.65067 -32.65815 -30.91458 -30.03474 -29.04557 -27.74040 -27.02124 -24.49401 -23.85793 -23.06715 -22.46908 -22.05231 -19.84532 -19.35522 -18.64308 -17.72407 -17.13346 -16.83002 -16.15778 -15.98253 -15.73945 -15.23173 -15.03704 -14.69530 -14.55875 -14.35585 -14.04899 -13.61907 -13.44206 -13.37208 -13.14602 -12.70187 -12.41812 -12.29663 -12.11222 -12.05810 -11.70946 -11.65005 -11.46436 -11.20832 -11.17851 -11.01210 -10.81339 -10.79574 -10.46424 -10.40715 -10.27258 -10.13550 -9.71384 -9.36506 -8.85742 -8.75674 -8.37840 -7.85859 -6.34230 -4.38997 0.37997 0.88024 2.08477 2.26788 3.03178 3.18224 3.22335 3.29330 3.52372 3.71088 3.98102 4.19578 4.25044 4.48886 4.70317 4.80378 4.94526 5.01860 5.07182 5.10130 5.13615 5.29621 5.54611 5.66773 5.71414 5.81010 5.84937 5.87510 5.96660 5.98883 6.03906 6.08690 6.19670 6.21903 6.30019 6.35598 6.36431 6.55334 6.58315 6.61793 6.67331 6.80082 7.14914 7.31514 7.93543 7.94392 8.28380 8.66322 8.76031 9.22918 10.76689 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009456 B = 0.005299 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.329666 B = 5282.627430 C = 7537.202499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.129 4.129 5 C 0.120 3.880 6 N -0.578 5.578 7 C 0.181 3.819 8 C -0.553 4.553 9 H 0.085 0.915 10 C 0.088 3.912 11 N -0.874 5.874 12 Si 0.851 3.149 13 H -0.256 1.256 14 H -0.279 1.279 15 H -0.263 1.263 16 C 0.563 3.437 17 O -0.548 6.548 18 C -0.190 4.190 19 C 0.035 3.965 20 C -0.043 4.043 21 N -0.182 5.182 22 N -0.011 5.011 23 N -0.503 5.503 24 H 0.446 0.554 25 C 0.134 3.866 26 C -0.195 4.195 27 C 0.211 3.789 28 F -0.112 7.112 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.034 0.966 41 H 0.048 0.952 42 H 0.271 0.729 43 H 0.207 0.793 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 10.531 8.557 13.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.168 4.168 5 C -0.003 4.003 6 N -0.307 5.307 7 C 0.061 3.939 8 C -0.590 4.590 9 H 0.103 0.897 10 C -0.119 4.119 11 N -0.509 5.509 12 Si 0.676 3.324 13 H -0.180 1.180 14 H -0.204 1.204 15 H -0.187 1.187 16 C 0.351 3.649 17 O -0.427 6.427 18 C -0.197 4.197 19 C 0.013 3.987 20 C -0.166 4.166 21 N -0.063 5.063 22 N 0.007 4.993 23 N -0.224 5.224 24 H 0.293 0.707 25 C 0.010 3.990 26 C -0.219 4.219 27 C 0.187 3.813 28 F -0.090 7.090 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.223 0.777 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.990 9.397 8.598 12.891 hybrid contribution 0.272 1.126 0.999 1.529 sum -1.718 10.523 9.597 14.345 Atomic orbital electron populations 1.21892 0.95211 1.02414 1.01037 1.21031 0.95981 0.95827 0.98392 1.21824 1.00791 0.96247 1.01335 1.22009 1.00907 0.95912 0.97964 1.21465 1.01307 0.91098 0.86381 1.47750 1.20693 1.51298 1.10956 1.20624 0.81513 0.93291 0.98491 1.21301 1.01072 1.00952 1.35664 0.89662 1.24857 0.98300 0.94480 0.94255 1.69865 1.31612 1.09436 1.39994 0.87193 0.83925 0.79772 0.81528 1.18032 1.20444 1.18697 1.17677 0.84703 0.79251 0.83309 1.90749 1.19615 1.47635 1.84740 1.19819 1.05587 1.00525 0.93773 1.22246 0.86925 0.90697 0.98800 1.19921 1.05010 0.97544 0.94141 1.74960 1.11948 1.14715 1.04646 1.81619 1.10989 1.05274 1.01378 1.47663 1.40982 1.24616 1.09170 0.70701 1.18986 0.96352 0.94618 0.89013 1.19246 1.05631 0.99027 0.97956 1.16882 0.88455 0.83840 0.92155 1.91587 1.69213 1.51047 1.97157 0.93281 0.91962 0.92806 0.91037 0.92867 0.92998 0.92921 0.91895 0.91951 0.89454 0.90315 0.94786 0.93508 0.91897 0.77653 0.83496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.06 37.16 0.34 -1.50 16 2 C -0.09 -1.17 2.92 -90.62 -0.26 -1.43 16 3 C -0.14 -1.58 9.19 37.16 0.34 -1.23 16 4 C -0.13 -1.93 4.97 -26.73 -0.13 -2.07 16 5 C 0.12 2.11 5.21 -4.04 -0.02 2.08 16 6 N -0.58 -11.45 2.51 -176.27 -0.44 -11.89 16 7 C 0.18 3.83 3.73 -5.20 -0.02 3.81 16 8 C -0.55 -13.68 8.09 -34.44 -0.28 -13.96 16 9 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 10 C 0.09 2.26 5.47 -17.82 -0.10 2.17 16 11 N -0.87 -24.31 13.96 55.43 0.77 -23.53 16 12 Si 0.85 19.14 27.47 -169.99 -4.67 14.47 16 13 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 16 C 0.56 11.35 7.26 -12.44 -0.09 11.26 16 17 O -0.55 -11.92 15.64 5.29 0.08 -11.83 16 18 C -0.19 -3.47 5.51 -104.98 -0.58 -4.05 16 19 C 0.03 0.66 7.45 -38.77 -0.29 0.37 16 20 C -0.04 -0.76 7.26 -84.75 -0.62 -1.37 16 21 N -0.18 -3.40 12.40 32.15 0.40 -3.01 16 22 N -0.01 -0.17 13.82 60.35 0.83 0.67 16 23 N -0.50 -5.94 7.54 32.38 0.24 -5.70 16 24 H 0.45 3.15 8.96 -182.50 -1.64 1.51 16 25 C 0.13 1.89 7.34 -84.10 -0.62 1.27 16 26 C -0.19 -2.47 9.97 -39.83 -0.40 -2.87 16 27 C 0.21 3.31 7.18 -39.35 -0.28 3.02 16 28 F -0.11 -1.82 16.03 2.25 0.04 -1.78 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.83 6.26 -51.93 -0.33 0.51 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.55 7.91 -51.93 -0.41 1.14 16 39 H 0.08 1.41 5.61 -51.93 -0.29 1.12 16 40 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 41 H 0.05 0.98 3.23 -52.34 -0.17 0.82 16 42 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.21 4.41 3.92 -52.48 -0.21 4.21 16 44 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -29.57 363.38 -7.08 -36.64 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.81 Total: 4.98 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -3.01 Total: -4.50 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 1.81 Total: -43.46 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.67 Total: 14.47 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.57 -7.08 -36.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781943731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.680 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.13 seconds